mRNA_P-wetherbeei_contig6141.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6141.2.1
Unique NamemRNA_P-wetherbeei_contig6141.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A6H5J8L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8L0_9PHAE)

HSP 1 Score: 273 bits (699), Expect = 1.040e-88
Identity = 133/228 (58.33%), Postives = 173/228 (75.88%), Query Frame = 1
Query:    1 VALPGDDLTNHIAPSGPKLRLGAGLV-HRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            V LPGDD+T     +   LRLG GLV H    V ATRAG+LR++PP TYW+++N +RY ARVEDQV+G+VE+RM D Y++N+FGS  ALL +L F+GASKR+KPNL  G+LV+CRV A +KDME ELTC + HHG  KDW TGQSTFGEL+ G   RCSL+ ++SL +P+  VL +L + +PFE+A G+NG  WV++G+ AH I +CNAILN+EVM+D +T  MVDRL
Sbjct:   86 VVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVLATRAGVLRYRPPCTYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKYMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDAQTDAMVDRL 313          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: D8LG41_ECTSI (RNA binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG41_ECTSI)

HSP 1 Score: 263 bits (673), Expect = 7.540e-86
Identity = 128/228 (56.14%), Postives = 168/228 (73.68%), Query Frame = 1
Query:    1 VALPGDDLTNHIAPSGPKLRLGAGLV-HRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            V LPGDD+T     +   LRLG GLV H    V ATRAG+LR++PP +YW+++N +RY ARVEDQV+G+VE+RM D Y++N+FGS  ALL +L F+GASKR+KPNL  G+LV+CRV A +KDME ELTC + HHG  KDW TGQSTFGEL+ G   RCSL+ ++SL +P+  VL +L + +PFE+A G+NG  WV++G+ AH I +CNAILN+EVM+D        RL
Sbjct:    9 VVLPGDDVTETTTRTTRSLRLGPGLVQHAQDKVMATRAGVLRYRPPCSYWVESNGRRYGARVEDQVLGIVEDRMADSYKVNIFGSCAALLGMLEFDGASKRSKPNLRTGSLVFCRVAAVNKDMETELTCTSTHHGSKKDWMTGQSTFGELRGGKMERCSLLLSKSLTKPDCRVLKSLAKHMPFELAAGLNGTFWVDSGSEAHTIVICNAILNSEVMTDXXXXXXXXRL 236          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A1V9Y536_9STRA (Exosome complex exonuclease RRP40 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Y536_9STRA)

HSP 1 Score: 252 bits (643), Expect = 3.280e-81
Identity = 125/225 (55.56%), Postives = 164/225 (72.89%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T HIA  G KLRLGAGLV  G +V  T AGLLR++PP  YWID N KRY+A V+D VVGLV +R  +FYR+++  SS A L +L+F+GASKRN+PNL  G+LVYCRV++ +KD+EP LTC    H   KDW TG + +GEL  G   + S+  A+SL++ + AVL ALG+ +PFEVA G+NGVVWVN+G+  + I + NAILN+E ++D +   MVDRL
Sbjct:   23 LPGDDVTKHIANLGQKLRLGAGLVANGSTVSCTNAGLLRYRPPNRYWIDFNHKRYVAAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVLSTNKDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKVSIGLAKSLLKDDCAVLAALGKAIPFEVAAGMNGVVWVNSGSCHNTILITNAILNSEGLTDAQIEAMVDRL 247          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A835YY15_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY15_9STRA)

HSP 1 Score: 245 bits (625), Expect = 1.210e-77
Identity = 123/225 (54.67%), Postives = 157/225 (69.78%), Query Frame = 1
Query:    1 VALPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADK----------DMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNA--GTPAHIIAVCNAILNAE 639
            V LPGD +T H+  +  KL LG GL  RG  V ATRAG LRH PP+T+W++ NQ+RYI + ED V+G++E+R GD+YR+N+FG S ALL LL+F+GA++RNKPNL  GA+VYCRV +A+           DMEPEL+C    H + KDW T Q TFGEL  GM  RCSLM AR LM+P+ AVL+ALG  + FE+A+G NG  WVN+  G PA  + + NAI NAE
Sbjct:   63 VVLPGDRVTEHVTAAALKLTLGTGLAQRGDDVFATRAGTLRHAPPRTWWVEGNQRRYIPKCEDHVLGIIEDRSGDYYRVNIFGPSAALLPLLAFDGATRRNKPNLKPGAIVYCRVASANNASAPRFPEHCDMEPELSCEAAGHALKKDWMTRQGTFGELMGGMYARCSLMQARRLMQPDCAVLSALGAELAFEIAIGENGAFWVNSAGGAPATTVII-NAIRNAE 286          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A1W0A9P5_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A9P5_9STRA)

HSP 1 Score: 239 bits (609), Expect = 4.400e-76
Identity = 116/225 (51.56%), Postives = 161/225 (71.56%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T  IA +  KLRLGAGLV  G  V AT AG+LR++PP  YWID N KRYI  ++D VVG++ +R  +FYR+++  S+ A L +L+F+GASKRN+PNL  G+LVYCRV +A++++EP LTC    H   KDW TG + +GEL  G  ++ S+  A+SL++ E  VL+ALGR +PFE+AVG NG++WVN+GT    I + NAILN+E + + +   MVD+L
Sbjct:   23 LPGDDVTTSIANTNQKLRLGAGLVASGTQVLATNAGVLRYRPPNRYWIDFNHKRYIPSMDDGVVGVIVDRNAEFYRLDIGASTYATLGMLAFDGASKRNRPNLQPGSLVYCRVASANQNLEPSLTCEAPSHMTKKDWMTGLALYGELNGGYVLKTSIGLAKSLLKDECVVLSALGRAIPFEIAVGFNGIIWVNSGTCQDTILITNAILNSEGLPEAQVEAMVDKL 247          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: T0R8U7_SAPDV (KH_dom_type_1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0R8U7_SAPDV)

HSP 1 Score: 238 bits (608), Expect = 6.650e-76
Identity = 116/225 (51.56%), Postives = 160/225 (71.11%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T HIA    KLRLGAGL+  G ++ +T AG+LR++PP  YW+D N KRY+  V+D VVGLV +R  +FYR+++  SS A L +L+F+GASKRN+PNL  GALVYCRV++ ++D+EP LTC    H   KDW TG + +GEL  G   + S+  A+SL++ + AVL+ALG+ +PFEVA G NG+VWVN+ +    I + NAILN+E + D +   MVD+L
Sbjct:   23 LPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMSKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPDAQVEAMVDKL 247          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A067BU90_SAPPC (SET domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BU90_SAPPC)

HSP 1 Score: 238 bits (607), Expect = 3.260e-74
Identity = 116/225 (51.56%), Postives = 159/225 (70.67%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T HIA    KLRLGAGL+  G ++ +T AG+LR++PP  YW+D N KRY+  V+D VVGLV +R  +FYR+++  SS A L +L+F+GASKRN+PNL  GALVYCRV++ ++D+EP LTC    H   KDW TG + +GEL  G   + S+  A+SL++ + AVL+ALG+ +PFEVA G NG+VWVN+ +    I + NAILN+E + D +   MVD L
Sbjct:   23 LPGDDVTKHIANLSQKLRLGAGLIANGNAITSTNAGVLRYRPPNRYWLDYNHKRYVPAVDDGVVGLVVDRNAEFYRLDIGASSYATLGMLAFDGASKRNRPNLQPGALVYCRVLSTNQDLEPALTCEAPSHMTKKDWMTGLALYGELNGGYVFKASIGLAKSLLKDDCAVLSALGKAMPFEVAAGFNGLVWVNSSSCHDTILITNAILNSEGLPDAQVEAMVDTL 247          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A485LHG2_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHG2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 3.920e-70
Identity = 112/226 (49.56%), Postives = 155/226 (68.58%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLV-HRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T HI     KLRLGAGLV      V  T+AG+LR++PP  YW+D N KRY+  V+D VVG++ +R  +FYR+++  SS A L +L+F+GASKRN+PNL  G+LVYCRVV A KD++P +TC    H   KDW TG S +GEL  G  ++ S+  A+SL++ E  VL+ALG  +PFE+AVG NG++W+N+ T    I + NAILN+E ++  +   MV +L
Sbjct:   23 LPGDDVTQHITHVTQKLRLGAGLVADNNNRVLCTQAGVLRYRPPNRYWLDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGASSYATLGMLAFDGASKRNRPNLQPGSLVYCRVVRASKDLDPCVTCEAPSHMAKKDWMTGLSIYGELTGGYVLKASVGLAKSLLKDECVVLSALGTSIPFEIAVGFNGIIWINSKTNQDTILITNAILNSEGLTPAQNEAMVLKL 248          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A812WP99_9DINO (Exosc3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812WP99_9DINO)

HSP 1 Score: 221 bits (564), Expect = 3.600e-69
Identity = 112/230 (48.70%), Postives = 162/230 (70.43%), Query Frame = 1
Query:    1 VALPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVE--ERMGD-FYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            V +PG++LT  +     ++R G G+  +G +V +T+AG+LRH+ P   W++A+ +RYIA+VED V+G+V   +R  D  YR++L G+S  LL  L+F+GASK+NKP+L +G+ VY RV AA + MEP+L+C   + G  KDW TG+S FGELK G+  RCS   A+ L+ PE  VLNALG+R+PFE+AVGVNG+ WVNAG  AH++ + NA+LN+E +S  +   MV +L
Sbjct:   27 VVVPGEELTEDLVSIQQRVRTGGGVQQQGDNVVSTKAGVLRHQLPNRVWVEASSRRYIAKVEDPVIGIVTGMDRASDGTYRLSLHGTSEGLLPKLAFDGASKKNKPDLQIGSAVYARVAAAPRAMEPQLSCQVVN-GPKKDWVTGESLFGELKGGLLTRCSSGLAQDLLDPEHVVLNALGKRIPFELAVGVNGMFWVNAGQHAHVVLITNALLNSEFLSAAQASAMVQQL 255          
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Match: A0A6G0XI83_9STRA (Ribosomal RNA-processing protein 40 n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XI83_9STRA)

HSP 1 Score: 221 bits (562), Expect = 6.370e-69
Identity = 113/226 (50.00%), Postives = 157/226 (69.47%), Query Frame = 1
Query:    7 LPGDDLTNHIAPSGPKLRLGAGLVHRGGS-VRATRAGLLRHKPPQTYWIDANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKRNKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELKDGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPAHIIAVCNAILNAEVMSDGETLIMVDRL 681
            LPGDD+T HI     KLRLGAGL+    + V  T AG+LR++PP  YWID N KRY+  V+D VVG++ +R  +FYR+++ G++ A L +L+F+GASKRN+PNL  G+L+YCRV+ A KD+EP +TC    H   KDW TG + +GEL  G   + S+  A+SL+  +  VL ALG+ VPFE+AVGVNGVVW+N+ + A  I + NAILN+E ++  ++  MV RL
Sbjct:   23 LPGDDVTQHITNVTRKLRLGAGLIADDQNRVVCTNAGVLRYRPPNRYWIDFNHKRYLPSVDDGVVGMIVDRNAEFYRVDIGGAAHATLGMLAFDGASKRNRPNLQPGSLIYCRVLRAAKDLEPCVTCEAPSHLTKKDWMTGLAIYGELIGGFVFKISIGLAKSLLEDDCVVLTALGKSVPFELAVGVNGVVWLNSKSNADTILITNAILNSEGLNAAQSEAMVARL 248          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6141.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8L0_9PHAE1.040e-8858.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG41_ECTSI7.540e-8656.14RNA binding protein n=1 Tax=Ectocarpus siliculosus... [more]
A0A1V9Y536_9STRA3.280e-8155.56Exosome complex exonuclease RRP40 n=1 Tax=Achlya h... [more]
A0A835YY15_9STRA1.210e-7754.67Ribosomal RNA-processing protein 40 n=1 Tax=Tribon... [more]
A0A1W0A9P5_9STRA4.400e-7651.56Ribosomal RNA-processing protein 40 n=1 Tax=Thraus... [more]
T0R8U7_SAPDV6.650e-7651.56KH_dom_type_1 domain-containing protein n=1 Tax=Sa... [more]
A0A067BU90_SAPPC3.260e-7451.56SET domain-containing protein n=1 Tax=Saprolegnia ... [more]
A0A485LHG2_9STRA3.920e-7049.56Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]
A0A812WP99_9DINO3.600e-6948.70Exosc3 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=... [more]
A0A6G0XI83_9STRA6.370e-6950.00Ribosomal RNA-processing protein 40 n=1 Tax=Aphano... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6141contigP-wetherbeei_contig6141:1259..1939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LG41
Preferred nameEXOSC3
PFAMsKH_6
Model size681
Max annot lvl2759|Eukaryota
KEGG koko:K03681,ko:K14684
KEGG TC2.A.29.23
KEGG Pathwayko03018,map03018
KEGG ModuleM00391
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000175,GO:0000176,GO:0000177,GO:0000178,GO:0000184,GO:0000288,GO:0000291,GO:0000459,GO:0000460,GO:0000466,GO:0000467,GO:0000469,GO:0000785,GO:0000956,GO:0001775,GO:0002164,GO:0002200,GO:0002204,GO:0002208,GO:0002250,GO:0002252,GO:0002263,GO:0002285,GO:0002312,GO:0002366,GO:0002376,GO:0002377,GO:0002381,GO:0002440,GO:0002443,GO:0002449,GO:0002460,GO:0002520,GO:0002562,GO:0002637,GO:0002639,GO:0002682,GO:0002684,GO:0002694,GO:0002696,GO:0002697,GO:0002699,GO:0002700,GO:0002702,GO:0002703,GO:0002705,GO:0002706,GO:0002708,GO:0002712,GO:0002714,GO:0002819,GO:0002821,GO:0002822,GO:0002824,GO:0002889,GO:0002891,GO:0003674,GO:0003676,GO:0003723,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006304,GO:0006310,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006955,GO:0007275,GO:0008150,GO:0008152,GO:0008298,GO:0008408,GO:0009056,GO:0009057,GO:0009791,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010608,GO:0010629,GO:0016064,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016078,GO:0016180,GO:0016444,GO:0016445,GO:0016447,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019219,GO:0019222,GO:0019439,GO:0019724,GO:0022613,GO:0030097,GO:0030145,GO:0031123,GO:0031125,GO:0031126,GO:0031323,GO:0031325,GO:0031329,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035166,GO:0035167,GO:0035327,GO:0042113,GO:0042254,GO:0043144,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043487,GO:0043488,GO:0043628,GO:0043632,GO:0043633,GO:0043634,GO:0043928,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045006,GO:0045190,GO:0045191,GO:0045321,GO:0045830,GO:0045911,GO:0045935,GO:0046483,GO:0046649,GO:0046700,GO:0046872,GO:0046914,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048542,GO:0048569,GO:0048583,GO:0048584,GO:0048731,GO:0048732,GO:0048856,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050864,GO:0050865,GO:0050867,GO:0050871,GO:0050896,GO:0051052,GO:0051054,GO:0051094,GO:0051171,GO:0051173,GO:0051179,GO:0051239,GO:0051240,GO:0051249,GO:0051251,GO:0051252,GO:0051641,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070013,GO:0070478,GO:0070481,GO:0070651,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071031,GO:0071033,GO:0071034,GO:0071035,GO:0071038,GO:0071042,GO:0071043,GO:0071046,GO:0071047,GO:0071049,GO:0071051,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903311,GO:1905354,GO:2000026
Exons1
Evalue1.24e-86
EggNOG OGsCOG1097@1|root,KOG1004@2759|Eukaryota
Ec32 ortholog descriptionRNA binding protein
Ec32 orthologEc-11_002030.1
Descriptionnuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription
Cds size681
COG categoryJ
BRITEko00000,ko00001,ko00002,ko02000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.77931-CDS-P-wetherbeei_contig6141:1258..19391683186891.77931-CDS-P-wetherbeei_contig6141:1258..1939Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6141 1259..1939 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6141.2.1prot_P-wetherbeei_contig6141.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6141 1259..1939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6141.2.1

>prot_P-wetherbeei_contig6141.2.1 ID=prot_P-wetherbeei_contig6141.2.1|Name=mRNA_P-wetherbeei_contig6141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=227bp
VALPGDDLTNHIAPSGPKLRLGAGLVHRGGSVRATRAGLLRHKPPQTYWI
DANQKRYIARVEDQVVGLVEERMGDFYRMNLFGSSPALLNLLSFEGASKR
NKPNLGVGALVYCRVVAADKDMEPELTCLTGHHGVAKDWNTGQSTFGELK
DGMAVRCSLMHARSLMRPESAVLNALGRRVPFEVAVGVNGVVWVNAGTPA
HIIAVCNAILNAEVMSDGETLIMVDRL
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mRNA from alignment at P-wetherbeei_contig6141:1259..1939-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6141.2.1 ID=mRNA_P-wetherbeei_contig6141.2.1|Name=mRNA_P-wetherbeei_contig6141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig6141:1259..1939- (Phaeothamnion wetherbeei SAG_119_79)
GTAGCGCTGCCCGGCGACGACCTCACAAATCACATCGCTCCAAGCGGGCC GAAGCTTCGATTGGGGGCTGGACTTGTTCATCGTGGCGGCAGTGTTCGGG CTACACGCGCAGGTCTGCTCCGGCACAAGCCTCCTCAGACCTATTGGATC GATGCCAACCAAAAGCGATACATTGCGCGCGTCGAAGACCAGGTCGTGGG GCTCGTGGAGGAGCGCATGGGCGACTTCTACAGGATGAACCTCTTCGGCT CGTCGCCGGCGCTGCTCAATCTGCTGTCCTTCGAAGGCGCCTCCAAGCGG AATAAGCCGAACCTAGGCGTCGGCGCGCTGGTCTACTGCCGCGTCGTCGC AGCCGACAAGGACATGGAGCCCGAGCTGACGTGCCTGACGGGCCACCATG GCGTTGCCAAGGACTGGAACACCGGCCAGAGCACCTTCGGCGAGCTTAAG GACGGCATGGCCGTCCGTTGCTCGCTTATGCACGCCCGCAGCCTCATGCG GCCGGAATCCGCCGTCTTGAACGCCCTCGGCCGCCGCGTCCCCTTCGAGG TCGCTGTCGGCGTCAACGGCGTCGTGTGGGTCAATGCCGGCACGCCTGCC CACATCATTGCCGTTTGCAACGCGATTTTGAACGCGGAAGTGATGTCGGA TGGCGAGACGCTGATTATGGTCGATCGGCTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6141:1259..1939-

>mRNA_P-wetherbeei_contig6141.2.1 ID=mRNA_P-wetherbeei_contig6141.2.1|Name=mRNA_P-wetherbeei_contig6141.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=681bp|location=Sequence derived from alignment at P-wetherbeei_contig6141:1259..1939- (Phaeothamnion wetherbeei SAG_119_79)
GTAGCGCTGCCCGGCGACGACCTCACAAATCACATCGCTCCAAGCGGGCC
GAAGCTTCGATTGGGGGCTGGACTTGTTCATCGTGGCGGCAGTGTTCGGG
CTACACGCGCAGGTCTGCTCCGGCACAAGCCTCCTCAGACCTATTGGATC
GATGCCAACCAAAAGCGATACATTGCGCGCGTCGAAGACCAGGTCGTGGG
GCTCGTGGAGGAGCGCATGGGCGACTTCTACAGGATGAACCTCTTCGGCT
CGTCGCCGGCGCTGCTCAATCTGCTGTCCTTCGAAGGCGCCTCCAAGCGG
AATAAGCCGAACCTAGGCGTCGGCGCGCTGGTCTACTGCCGCGTCGTCGC
AGCCGACAAGGACATGGAGCCCGAGCTGACGTGCCTGACGGGCCACCATG
GCGTTGCCAAGGACTGGAACACCGGCCAGAGCACCTTCGGCGAGCTTAAG
GACGGCATGGCCGTCCGTTGCTCGCTTATGCACGCCCGCAGCCTCATGCG
GCCGGAATCCGCCGTCTTGAACGCCCTCGGCCGCCGCGTCCCCTTCGAGG
TCGCTGTCGGCGTCAACGGCGTCGTGTGGGTCAATGCCGGCACGCCTGCC
CACATCATTGCCGTTTGCAACGCGATTTTGAACGCGGAAGTGATGTCGGA
TGGCGAGACGCTGATTATGGTCGATCGGCTC
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