mRNA_P-wetherbeei_contig6137.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6137.4.1
Unique NamemRNA_P-wetherbeei_contig6137.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: UPI00048F8CB7 (DUF1653 domain-containing protein n=1 Tax=Chitinilyticum aquatile TaxID=362520 RepID=UPI00048F8CB7)

HSP 1 Score: 61.2 bits (147), Expect = 1.740e-11
Identity = 25/33 (75.76%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL 99
            PLYGEGALWVRP AMF+E VTVDG++VPRF+++
Sbjct:   43 PLYGEGALWVRPYAMFLETVTVDGQSVPRFSRI 75
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: UPI0019D3CC16 (DUF1653 domain-containing protein n=1 Tax=Parahaliea mediterranea TaxID=651086 RepID=UPI0019D3CC16)

HSP 1 Score: 60.5 bits (145), Expect = 2.960e-11
Identity = 26/33 (78.79%), Postives = 29/33 (87.88%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL 99
            P YGEGALWVRPLAMFVE V VDG+ VPRFA++
Sbjct:   36 PCYGEGALWVRPLAMFVETVEVDGEPVPRFARI 68
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: A0A0J5JFH6_9NEIS (DUF1653 domain-containing protein n=3 Tax=Betaproteobacteria TaxID=28216 RepID=A0A0J5JFH6_9NEIS)

HSP 1 Score: 59.7 bits (143), Expect = 6.270e-11
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL 99
            PLYGEG LWVRPLAMF E VT+DG +VPRFA L
Sbjct:   38 PLYGEGKLWVRPLAMFCETVTIDGHSVPRFALL 70
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: A0A0U2Z507_9ALTE (DUF1653 domain-containing protein n=1 Tax=Lacimicrobium alkaliphilum TaxID=1526571 RepID=A0A0U2Z507_9ALTE)

HSP 1 Score: 58.9 bits (141), Expect = 1.260e-10
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFA 93
            PLYGEGALW+RPL+MF E+V V+GK VPRFA
Sbjct:   36 PLYGEGALWIRPLSMFTEEVEVEGKLVPRFA 66
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: A0A2A3LN72_9GAMM (DUF1653 domain-containing protein n=1 Tax=Xanthomonadaceae bacterium NML93-0399 TaxID=2032565 RepID=A0A2A3LN72_9GAMM)

HSP 1 Score: 58.2 bits (139), Expect = 3.090e-10
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFA 93
            PLYGEGALWVRP AMFVE V VDG  VPRFA
Sbjct:   43 PLYGEGALWVRPYAMFVETVIVDGVAVPRFA 73
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: A0A257LFT3_9BURK (DUF1653 domain-containing protein n=1 Tax=Burkholderiales bacterium PBB5 TaxID=2015567 RepID=A0A257LFT3_9BURK)

HSP 1 Score: 58.2 bits (139), Expect = 3.250e-10
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL 99
            PLYGEGALWVRP AMF E V++DG T PRFA+L
Sbjct:   44 PLYGEGALWVRPHAMFFESVSIDGLTQPRFARL 76
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: UPI001BDB4976 (DUF1653 domain-containing protein n=1 Tax=Alteromonas sp. SM 2104 TaxID=2836180 RepID=UPI001BDB4976)

HSP 1 Score: 57.8 bits (138), Expect = 3.450e-10
Identity = 25/31 (80.65%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFA 93
            PLYGEGALWVRPL +F E V VDGK VPRFA
Sbjct:   36 PLYGEGALWVRPLTLFSETVEVDGKAVPRFA 66
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: UPI001C27D5DD (DUF1653 domain-containing protein n=3 Tax=Geobacteraceae TaxID=213422 RepID=UPI001C27D5DD)

HSP 1 Score: 57.8 bits (138), Expect = 3.530e-10
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAK 96
            PLYGEG LWVRP AMF+E V VDGK VPRFA+
Sbjct:   36 PLYGEGGLWVRPEAMFMETVLVDGKPVPRFAR 67
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: UPI001678F367 (DUF1653 domain-containing protein n=1 Tax=Vogesella alkaliphila TaxID=1193621 RepID=UPI001678F367)

HSP 1 Score: 57.8 bits (138), Expect = 3.620e-10
Identity = 25/33 (75.76%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL 99
            PLYG G LWVRPL MF E VTVDG++VPRFA L
Sbjct:   38 PLYGAGGLWVRPLVMFCETVTVDGRSVPRFALL 70
[Close]
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Match: A0A4R5U5G4_9GAMM (DUF1653 domain-containing protein n=1 Tax=Luteimonas terrae TaxID=1530191 RepID=A0A4R5U5G4_9GAMM)

HSP 1 Score: 57.8 bits (138), Expect = 4.290e-10
Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 
Query:    1 PLYGEGALWVRPLAMFVEDVTVDGKTVPRFA 93
            PLYGEGALWVRP AMFVE V VDG+ +PRFA
Sbjct:   43 PLYGEGALWVRPHAMFVETVDVDGRALPRFA 73
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6137.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00048F8CB71.740e-1175.76DUF1653 domain-containing protein n=1 Tax=Chitinil... [more]
UPI0019D3CC162.960e-1178.79DUF1653 domain-containing protein n=1 Tax=Parahali... [more]
A0A0J5JFH6_9NEIS6.270e-1178.79DUF1653 domain-containing protein n=3 Tax=Betaprot... [more]
A0A0U2Z507_9ALTE1.260e-1077.42DUF1653 domain-containing protein n=1 Tax=Lacimicr... [more]
A0A2A3LN72_9GAMM3.090e-1083.87DUF1653 domain-containing protein n=1 Tax=Xanthomo... [more]
A0A257LFT3_9BURK3.250e-1075.76DUF1653 domain-containing protein n=1 Tax=Burkhold... [more]
UPI001BDB49763.450e-1080.65DUF1653 domain-containing protein n=1 Tax=Alteromo... [more]
UPI001C27D5DD3.530e-1078.13DUF1653 domain-containing protein n=3 Tax=Geobacte... [more]
UPI001678F3673.620e-1075.76DUF1653 domain-containing protein n=1 Tax=Vogesell... [more]
A0A4R5U5G4_9GAMM4.290e-1080.65DUF1653 domain-containing protein n=1 Tax=Luteimon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6137contigP-wetherbeei_contig6137:3450..3551 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1120970.AUBZ01000002_gene903
PFAMsDUF1653
Model size102
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue2.12e-11
EggNOG OGsCOG4728@1|root,COG4728@2|Bacteria,1N6NP@1224|Proteobacteria,1SCKQ@1236|Gammaproteobacteria,468GN@72275|Alteromonadaceae
Descriptionprotein conserved in bacteria
Cds size102
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186891.3738105-CDS-P-wetherbeei_contig6137:3449..35511683186891.3738105-CDS-P-wetherbeei_contig6137:3449..3551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6137 3450..3551 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6137.4.1prot_P-wetherbeei_contig6137.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6137 3450..3551 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6137.4.1

>prot_P-wetherbeei_contig6137.4.1 ID=prot_P-wetherbeei_contig6137.4.1|Name=mRNA_P-wetherbeei_contig6137.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=34bp
PLYGEGALWVRPLAMFVEDVTVDGKTVPRFAKL*
back to top

mRNA from alignment at P-wetherbeei_contig6137:3450..3551-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6137.4.1 ID=mRNA_P-wetherbeei_contig6137.4.1|Name=mRNA_P-wetherbeei_contig6137.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig6137:3450..3551- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTATATGGTGAAGGCGCCCTCTGGGTGCGACCCCTGGCGATGTTCGT
GGAGGACGTCACCGTGGACGGCAAAACAGTCCCGCGCTTCGCCAAGCTTT
AG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6137:3450..3551-

>mRNA_P-wetherbeei_contig6137.4.1 ID=mRNA_P-wetherbeei_contig6137.4.1|Name=mRNA_P-wetherbeei_contig6137.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=102bp|location=Sequence derived from alignment at P-wetherbeei_contig6137:3450..3551- (Phaeothamnion wetherbeei SAG_119_79)
CCTCTATATGGTGAAGGCGCCCTCTGGGTGCGACCCCTGGCGATGTTCGT
GGAGGACGTCACCGTGGACGGCAAAACAGTCCCGCGCTTCGCCAAGCTTT
AG
back to top