prot_P-wetherbeei_contig6122.3.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6122.3.1
Unique Nameprot_P-wetherbeei_contig6122.3.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length294
Homology
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BLAST of mRNA_P-wetherbeei_contig6122.3.1 vs. uniprot
Match: A0A835Z1R1_9STRA (Tubulin binding cofactor C-domain-containing protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1R1_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-6
Identity = 39/101 (38.61%), Postives = 50/101 (49.50%), Query Frame = 0 
Query:  101 FWVRWSDLEALGFLISGGLSLDDQDHRGLAQLCPLWDAAAVVRSNAADLLLPSTGGPKGGAGGASKGDDACETAPRARAQDVLNWLAAAMTINEHVYPVPP 201
            F V  +DL ALGFLI+GG +LDD   R L  LCPL                          GGA++G       P   A +V +WLAAA+T+N+ +YP PP
Sbjct:  197 FAVARADLSALGFLIAGGRALDDASQRDLCDLCPL------------------------AGGGATRG-------PVGSAAEVADWLAAALTVNDVLYPAPP 266
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6122.3.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835Z1R1_9STRA1.020e-638.61Tubulin binding cofactor C-domain-containing prote... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 36..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 35..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6122contigP-wetherbeei_contig6122:2606..3487 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6122.3.1mRNA_P-wetherbeei_contig6122.3.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6122 2580..3487 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6122.3.1 ID=prot_P-wetherbeei_contig6122.3.1|Name=mRNA_P-wetherbeei_contig6122.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=294bp
MRLHARSTDEAHRLTFVKKHLGLLLQLLCTRVSGPSPGTPPLPAPPPAKQ
QQQPTAAAAGSPGPPVAKDSVPSPSSPPGLGSHASPPGAGAPTFPLAEQE
FWVRWSDLEALGFLISGGLSLDDQDHRGLAQLCPLWDAAAVVRSNAADLL
LPSTGGPKGGAGGASKGDDACETAPRARAQDVLNWLAAAMTINEHVYPVP
PSPAAVFFAEQHEDGPLAATAAVGGGGGSFDGVVASAAAGHAAGSAAPGG
ANGSGSSSSVSGGGIGAVATGSDQASAPLLINCVCRGTILHSDD
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