prot_P-wetherbeei_contig612.1.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_P-wetherbeei_contig612.1.1
Unique Name	prot_P-wetherbeei_contig612.1.1
Type	polypeptide
Organism	Phaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length	357

Homology

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A835YJH4_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH4_9STRA)

HSP 1 Score: 230 bits (587), Expect = 7.530e-72
Identity = 115/170 (67.65%), Postives = 136/170 (80.00%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEE------------EKIAEWRPGHAYEGKALASDLSVTKGVDLFA 177
            MNVV+EIQ+INEREL+ GL+G ASWH KYKDSAWVFVGGL   LTEGDV+CV+SQWGEIEDINLVRD+ TGKSKGFAF+KYEDQRSTILAVDN NG +LL R LRVDH E+YRLPKEL+DKE+A++E               A W+PGHAYEGK +    ++ +GVD++A
Sbjct:    1 MNVVREIQKINERELKEGLTGSASWHHKYKDSAWVFVGGLGYELTEGDVICVLSQWGEIEDINLVRDQDTGKSKGFAFVKYEDQRSTILAVDNMNGAQLLGRPLRVDHVEKYRLPKELQDKEDAQQEGGGEQGGEGGEPRSAAAWKPGHAYEGKEIRGSHTLAQGVDVWA 170

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A7S3YEY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YEY6_HETAK)

HSP 1 Score: 227 bits (578), Expect = 3.150e-69
Identity = 114/167 (68.26%), Postives = 138/167 (82.63%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSG-DASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEA-EEEEKI--------AEWRPGHAYEGKALASDLSVTKGVDLF 176
            MNV+QEI+RIN+RELEAGL+G DASWH+KYK+SAWV+VG +   LTEGD+LC MSQWGEIEDIN VRDK TGK KGFAF+KYEDQRST+LAVDNFNGI+L+DRTLRVDHCE+YRLPKE++DKE+  EE+ K+        +++ PGHAY+   LAS   + KG DLF
Sbjct:    1 MNVIQEIKRINDRELEAGLTGTDASWHSKYKNSAWVYVGSIPYALTEGDILCFMSQWGEIEDINYVRDKDTGKPKGFAFVKYEDQRSTVLAVDNFNGIELVDRTLRVDHCEKYRLPKEVQDKEDQLEEDAKLLGKQHDSSSKFGPGHAYKDMELASKYDIAKGQDLF 167

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A7S2RL84_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL84_9STRA)

HSP 1 Score: 218 bits (555), Expect = 6.130e-67
Identity = 109/169 (64.50%), Postives = 135/169 (79.88%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDA-SWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEE-----------EKIAEWRPGHAYEGKALASDLSVTKGVDLF 176
            MNV+QEI+RINE EL  G++G A SWHA+Y+DSA+VFVGGL   L EGDVLCV SQWGE+EDINLVRD+ TGKSKGFAF+KYEDQRST+LAVDNFNG++LL R +RVDH  +Y+LP  L++KEEAEEE           E+ +++RPGHAYEG  LA+  ++ KGVDL+
Sbjct:    2 MNVIQEIKRINEEELSRGVAGGAGSWHAQYRDSAYVFVGGLPYDLVEGDVLCVFSQWGEVEDINLVRDEKTGKSKGFAFIKYEDQRSTVLAVDNFNGVELLGRLIRVDHVAKYKLPSHLREKEEAEEENSGHYGPEGDGEEESKYRPGHAYEGAELANKFNIHKGVDLY 170

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: D7FPK4_ECTSI (RRM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPK4_ECTSI)

HSP 1 Score: 225 bits (573), Expect = 8.380e-67
Identity = 112/168 (66.67%), Postives = 133/168 (79.17%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEEKIA----------EWRPGHAYEGKALASDLSVTKGVDLFA 177
            MNV+QEI+RINERELE G+SG ASWH +YKDSAWVF GG    LTEGD+LCVMSQWGEIEDINL R+K TGKSKGF F+KYE+Q+STILAVDNFNGI LL RT+RVDH  +Y LP E+++K E E+EE++A          +WRPG AYEGK LA+  +  KGVD+FA
Sbjct:    1 MNVIQEIKRINERELEQGVSGKASWHHEYKDSAWVFAGGFPYDLTEGDILCVMSQWGEIEDINLCREKDTGKSKGFCFIKYENQKSTILAVDNFNGIDLLGRTIRVDHKHKYSLPAEVREKAEKEDEERVARGEAPSEKGPQWRPGVAYEGKQLATSHNFHKGVDVFA 168

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A4D9D1V2_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D1V2_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.220e-66
Identity = 113/169 (66.86%), Postives = 134/169 (79.29%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSG-DASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEEKIA----------EWRPGHAYEGKALASDLSVTKGVDLFA 177
            MNVV+EIQR+NE+EL+ G +G + SWH +YKDSAWVFVG L   L+EGDVLCVMSQWGEIED++LVRDK TGKSKGFAFLKYEDQRSTILAVDN NGIKLL+RTLRVDH E+Y LPKE+ +K E +E+ ++            W+PGHAYEGK L     ++KGVDLFA
Sbjct:    1 MNVVREIQRLNEKELQRGTAGMEGSWHGQYKDSAWVFVGSLPLQLSEGDVLCVMSQWGEIEDLHLVRDKGTGKSKGFAFLKYEDQRSTILAVDNMNGIKLLERTLRVDHKEKYALPKEVLEKAEEKEKARLEAGEDGGGGGPRWKPGHAYEGKELVEGHDLSKGVDLFA 169

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A0P1A7U4_PLAHL (Rna-binding motif x-linked 2 n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A7U4_PLAHL)

HSP 1 Score: 218 bits (555), Expect = 8.440e-66
Identity = 109/166 (65.66%), Postives = 134/166 (80.72%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEEKIAEWR--PGHAYEGKALASDLSVTKGVDLFAVLPPSH 183
            MNVV EIQR+NERELE  +    SWH KYKDSAWVFVGGL   L+EGDVLCV+SQ+GEIEDI+LVRD  TGKSKGFAF+K+EDQRSTILAVDN NG KLLDR LRVDH  +Y+LPKEL+++ ++E+++ + + R  PGHAYEGK LAS   + KGV++FA +  +H
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYKDSAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEESDSEDDDHVRKQRGLPGHAYEGKELASSFDLEKGVNVFATVKETH 166

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: W2N0T6_PHYPR (RRM domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2N0T6_PHYPR)

HSP 1 Score: 214 bits (546), Expect = 1.890e-64
Identity = 110/165 (66.67%), Postives = 130/165 (78.79%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEE-EKIAEWRPGHAYEGKALASDLSVTKGVDLFAVLPPSH 183
            MNVV EIQR+NERELE  +    SWH KY +SAWVFVGGL   L+EGDVLCV+SQ+GEIEDI+LVRD  TGKSKGFAF+K+EDQRSTILAVDN NG KLLDR LRVDH  +Y+LPKEL++  ++E+E ++     PGHAYEGK LASD  + KGVD+FA    SH
Sbjct:    1 MNVVAEIQRLNERELELNVPLSGSWHQKYSESAWVFVGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKFEDQRSTILAVDNLNGFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEGDRKQRGLPGHAYEGKELASDFDLHKGVDVFAAPEESH 165

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A2P4XM74_9STRA (U2 snRNP component IST3 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XM74_9STRA)

HSP 1 Score: 209 bits (532), Expect = 5.670e-63
Identity = 105/157 (66.88%), Postives = 126/157 (80.25%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEEKIAEWR--PGHAYEGKALASDLSVTKGVD 174
            MNVV EIQR+NERELE  +    SWH KY +SAW+F+GGL   L+EGDVLCV+SQ+GEIEDI+LVRD  TGKSKGFAF+KYEDQRSTILAVDN N  KLLDR LRVDH  +Y+LPKEL++  ++E+E+K  + R  PGHAYEGK LA+D  + KGVD
Sbjct:    1 MNVVAEIQRLNERELELDVPLSGSWHQKYSESAWIFIGGLPFELSEGDVLCVLSQFGEIEDIHLVRDGKTGKSKGFAFIKYEDQRSTILAVDNLNSFKLLDRVLRVDHVLKYKLPKELQEDSDSEDEDKERKQRGLPGHAYEGKELATDFDLHKGVD 157

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A6A3KRR2_9STRA (RRM domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A6A3KRR2_9STRA)

HSP 1 Score: 211 bits (536), Expect = 5.980e-63
Identity = 106/159 (66.67%), Postives = 129/159 (81.13%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEE-EKIAEWRPGHAYEGKALASDLSVTKGVDLFA 177
            MNVV EIQR+NERELE  +   ASWH KY +SAWVFVGGL   L+EGDVLCV+SQ+GEIED++LVRD  TGKSKGFAF+K+EDQRST+LAVDN NG +LLDR LRVDH  +Y+LPKEL++  ++E+E E+     PGHAYEGK LASD  + +GVD+FA
Sbjct:    1 MNVVAEIQRLNERELELNVPLSASWHQKYLESAWVFVGGLPFELSEGDVLCVLSQFGEIEDLHLVRDGKTGKSKGFAFVKFEDQRSTVLAVDNLNGFRLLDRVLRVDHVLKYKLPKELQEDSDSEDEQERRPRGLPGHAYEGKELASDFDLQQGVDVFA 159

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BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Match: A0A7S1C5P3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C5P3_9STRA)

HSP 1 Score: 207 bits (528), Expect = 7.350e-63
Identity = 105/169 (62.13%), Postives = 130/169 (76.92%), Query Frame = 0

Query:   20 MNVVQEIQRINERELEAGLSGDASWHAKYKDSAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKYEDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEE------KIAEWRPGHAYEGKALASDLSVTKGVDLFAVLPPS 182
            MNVV+EI+RINE EL AG+S  ASWHA+Y+ SAWV+VGGL + LTEGDV+CV SQWGEIED+ LVRD+ TGKSKGFAF+KYEDQRST+LAVDN NG KLL RTLRVDH   Y+ PK+ KD+++   E+      ++    PGHAY  K LAS  S+++GVD+FA   P+
Sbjct:    1 MNVVREIERINEEELRAGISESASWHARYRSSAWVYVGGLSSELTEGDVVCVFSQWGEIEDVVLVRDEETGKSKGFAFIKYEDQRSTVLAVDNGNGAKLLGRTLRVDHKLEYQAPKKKKDRKDGYNEDSSGDDDELKAHAPGHAYAEKELASGYSISRGVDVFAAPEPT 169

The following BLAST results are available for this feature:

BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot

BLAST of mRNA_P-wetherbeei_contig612.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YJH4_9STRA	7.530e-72	67.65	RRM domain-containing protein n=1 Tax=Tribonema mi...	[more]
A0A7S3YEY6_HETAK	3.150e-69	68.26	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A7S2RL84_9STRA	6.130e-67	64.50	Hypothetical protein (Fragment) n=1 Tax=Rhizochrom...	[more]
D7FPK4_ECTSI	8.380e-67	66.67	RRM domain-containing protein n=2 Tax=Ectocarpus T...	[more]
A0A4D9D1V2_9STRA	2.220e-66	66.86	RRM domain-containing protein n=1 Tax=Nannochlorop...	[more]
A0A0P1A7U4_PLAHL	8.440e-66	65.66	Rna-binding motif x-linked 2 n=1 Tax=Plasmopara ha...	[more]
W2N0T6_PHYPR	1.890e-64	66.67	RRM domain-containing protein n=11 Tax=Phytophthor...	[more]
A0A2P4XM74_9STRA	5.670e-63	66.88	U2 snRNP component IST3 n=1 Tax=Phytophthora palmi...	[more]
A0A6A3KRR2_9STRA	5.980e-63	66.67	RRM domain-containing protein n=2 Tax=Phytophthora...	[more]
A0A7S1C5P3_9STRA	7.350e-63	62.13	Hypothetical protein (Fragment) n=1 Tax=Bicosoecid...	[more]

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InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 193..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 176..356
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 230..247
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..229
None	No IPR available	PANTHER	PTHR45880	RNA-BINDING MOTIF PROTEIN, X-LINKED 2	coord: 20..242
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 53..126 e-value: 8.9E-18 score: 75.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 54..124 e-value: 2.9E-16 score: 59.1
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 52..130 score: 15.749695
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 42..153 e-value: 3.1E-23 score: 84.2
IPR045844	Ist3-like, RNA recognition motif	CDD	cd12411	RRM_ist3_like	coord: 43..131 e-value: 3.02431E-61 score: 189.387
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 43..129

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-wetherbeei_contig612	contig	P-wetherbeei_contig612:1020..2512 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_P-wetherbeei_contig612.1.1	mRNA_P-wetherbeei_contig612.1.1	Phaeothamnion wetherbeei SAG_119_79	mRNA	P-wetherbeei_contig612 1020..2512 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_P-wetherbeei_contig612.1.1 ID=prot_P-wetherbeei_contig612.1.1|Name=mRNA_P-wetherbeei_contig612.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=357bp
CGHRNARLLIRGDFLSARAMNVVQEIQRINERELEAGLSGDASWHAKYKD
SAWVFVGGLVTTLTEGDVLCVMSQWGEIEDINLVRDKATGKSKGFAFLKY
EDQRSTILAVDNFNGIKLLDRTLRVDHCERYRLPKELKDKEEAEEEEKIA
EWRPGHAYEGKALASDLSVTKGVDLFAVLPPSHPPAPQASSNGSEEEDNA
QRARKKHKRHKKEEKRGKHHKKKHKREKKEWRDGGKDDNDDESDGEFHNG
GGGGGEPEGREGGSGAIQEEWRRDVGGTLAAARAAAAADEAAPLDLGTAR
RPVNTGPVADWRGTLFGGRGGGRGGMGSGGRGGGSGSGGGGGGRGGGGDR
RGGNGK*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR045844	RRM_Ist3-like
IPR035979	RBD_domain_sf