mRNA_P-wetherbeei_contig6115.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6115.1.1
Unique NamemRNA_P-wetherbeei_contig6115.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6115.1.1 vs. uniprot
Match: A0A7S2M6M4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2M6M4_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.260e-12
Identity = 31/73 (42.47%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   82 RWTCCGATSEDAPGCMAAPHVPKEMMVSIRARGGPPVLVGSQRVSVFQHLEMNIFPSTQYRLAIQMTRGVAML 300
            +WTCC A + +APGC  APH  KE    +R    PPV+ G   +S++ HLE+NIFPS  + L +Q+++ ++ L
Sbjct:  360 KWTCCQARASNAPGCKTAPHTGKERTAVVRVEALPPVVEG---ISLYSHLEVNIFPSVPHTLRVQISKSISRL 429
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BLAST of mRNA_P-wetherbeei_contig6115.1.1 vs. uniprot
Match: A0A7S2UCF0_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCF0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.020e-9
Identity = 30/78 (38.46%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   82 RWTCCGATSEDAPGCMAAPHVPKEMMVSIRARGGPPVLVGSQRVSVFQHLEMNIFPSTQYRLAIQMTRGVAMLLRRYF 315
            RW+CC A  E APGC + PH  +E  V IR    P  + G   ++++ H E+NI+PS  + + +QMT  +  L   YF
Sbjct: 2316 RWSCCHARWEGAPGCRSRPHTGQERAVDIRVESMPRTVEG---LTMYNHFEINIYPSVPHTIIVQMTNALGKLFIAYF 2390
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6115.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S2M6M4_9STRA3.260e-1242.47Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S2UCF0_9STRA1.020e-938.46Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6115contigP-wetherbeei_contig6115:78..506 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size324
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186889.5206969-CDS-P-wetherbeei_contig6115:77..2301683186889.5206969-CDS-P-wetherbeei_contig6115:77..230Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6115 78..230 +
1683186889.529103-CDS-P-wetherbeei_contig6115:335..5061683186889.529103-CDS-P-wetherbeei_contig6115:335..506Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6115 336..506 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6115.1.1prot_P-wetherbeei_contig6115.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6115 78..506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6115.1.1

>prot_P-wetherbeei_contig6115.1.1 ID=prot_P-wetherbeei_contig6115.1.1|Name=mRNA_P-wetherbeei_contig6115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=108bp
SVGGGGVGGFSGSGSGDDGKGGSGESCRWTCCGATSEDAPGCMAAPHVPK
EMMVSIRARGGPPVLVGSQRVSVFQHLEMNIFPSTQYRLAIQMTRGVAML
LRRYFCLE
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mRNA from alignment at P-wetherbeei_contig6115:78..506+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6115.1.1 ID=mRNA_P-wetherbeei_contig6115.1.1|Name=mRNA_P-wetherbeei_contig6115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig6115:78..506+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGTTGGCGGCGGCGGTGTTGGCGGCTTTAGCGGTAGCGGCAGCGGTGA
CGATGGGAAGGGAGGAAGCGGGGAGTCGTGCCGGTGGACATGCTGCGGTG
CGACTTCTGAGGACGCGCCGGGCTGCATGGCCGCGCCGCACGTGCCGAAG
GAGGTGAGGAGAAGCTGTATTTGCAGCTTTTTTCTCCTCTCCCCGCGGTT
CTCCCAAATGACTTTGTTTTTACCCTTTTATCTCGGCGCTTCCCTCTTTT
GTGTTCAGATGATGGTGTCTATCCGCGCGCGGGGCGGGCCGCCGGTGCTG
GTGGGATCTCAGCGGGTGTCGGTGTTCCAGCACCTCGAGATGAACATCTT
CCCATCCACGCAGTACCGCCTCGCCATCCAGATGACCCGCGGCGTCGCCA
TGCTGCTCCGCCGCTACTTCTGTCTCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6115:78..506+

>mRNA_P-wetherbeei_contig6115.1.1 ID=mRNA_P-wetherbeei_contig6115.1.1|Name=mRNA_P-wetherbeei_contig6115.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=324bp|location=Sequence derived from alignment at P-wetherbeei_contig6115:78..506+ (Phaeothamnion wetherbeei SAG_119_79)
AGCGTTGGCGGCGGCGGTGTTGGCGGCTTTAGCGGTAGCGGCAGCGGTGA
CGATGGGAAGGGAGGAAGCGGGGAGTCGTGCCGGTGGACATGCTGCGGTG
CGACTTCTGAGGACGCGCCGGGCTGCATGGCCGCGCCGCACGTGCCGAAG
GAGATGATGGTGTCTATCCGCGCGCGGGGCGGGCCGCCGGTGCTGGTGGG
ATCTCAGCGGGTGTCGGTGTTCCAGCACCTCGAGATGAACATCTTCCCAT
CCACGCAGTACCGCCTCGCCATCCAGATGACCCGCGGCGTCGCCATGCTG
CTCCGCCGCTACTTCTGTCTCGAG
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