mRNA_P-wetherbeei_contig6105.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6105.1.1
Unique NamemRNA_P-wetherbeei_contig6105.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: D7FMI8_ECTSI (NPC1_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMI8_ECTSI)

HSP 1 Score: 365 bits (936), Expect = 9.280e-119
Identity = 196/424 (46.23%), Postives = 247/424 (58.25%), Query Frame = 3
Query:   63 TDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAVRRDDLTGADTEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADANGXXXXXXXXGVSRSLCDGSGCGDRTGEVAAGCKGFRREERTAMRLAAPEMGHQPSTAAMAITATARKGDELDVTVALEGSAVTAAAVTAATAALGGGKEALTEEALACDSFWDPGAVTPPFLYPPPRERRIGCGCEYCPAACAAGGGPGGLDEDDLRMSVFGSFNAALVGLWYATVASACVALAWW 1334
            T D G C F Q+CFQ G+DT CT    A  ++A  FPMD++HGFGV H+ VWDGS  +P TGLC  G PD  GRC + F  PKGL  VAP++CP+++D+GCC+WQ N++LY+NLG LV++FGS+TGCLACAVNLV FWCALVCSP QG FA++HDPP   RRDDLTG  + VLQ D+ VD  + C IYESC+  A+VGE TAMQS LGLLKFQ+QTGAVGHG++FF S    + A+                    S CG++   V+ G           + + A E    P  AA A TA++                                   ++ + LACDSF+DPG+ T PF YPP RE  I C C+YC  AC+ GG       D   + V   F   LVG  YA V +  +AL WW
Sbjct:   36 TVDAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVENPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIVCPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPPFDQRRDDLTGGSSRVLQLDVNVDGDMACRIYESCKSIAVVGETTAMQSGLGLLKFQLQTGAVGHGEFFFPSFETNASAE--------------------SPCGNKRLPVSGG-----------LDVRATERKDDPQAAASAPTASSESSS-------------------------------MSFDTLACDSFFDPGSSTIPFAYPPKREDIISCTCDYCVQACSGGGSIDVDVSDKNPIPVLDGFGVGLVGGVYAAVVACSLALFWW 396          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A835YTW9_9STRA (NPC1_N domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTW9_9STRA)

HSP 1 Score: 304 bits (778), Expect = 9.700e-96
Identity = 138/227 (60.79%), Postives = 172/227 (75.77%), Query Frame = 3
Query:   69 DDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAVRRDDLTGA-DTEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLS 746
            D   CTF QDCFQ GVDTACT R Y   ES+ PFPM+AAHGF V H+ +WDGS  D  +GLCA G PD  GRC   ++    L+ VAP+MCP++  AGCCTWQ N++L++NL TLV +FG +TGCLACA NLV  WCALVCSP+QG + T+HDPPRA+  DDLTGA    VLQ D+++DA   CA++ESC  TAI G +TAMQSA+GLL+FQ+QTGA+GHG+YF+L+
Sbjct:    7 DQNQCTFTQDCFQNGVDTACTPREYTDRESSAPFPMNAAHGFNVAHDTIWDGSMADASSGLCARGRPDVQGRCIQSWDA--SLAAVAPIMCPQYAGAGCCTWQQNYALFQNLRTLVDSFGGATGCLACAANLVNLWCALVCSPQQGSYVTLHDPPRALMDDDLTGAAQLPVLQADVVLDADYACAVFESCSATAIAGASTAMQSAVGLLQFQLQTGAIGHGEYFYLA 231          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A6H5KYY4_9PHAE (NPC1_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYY4_9PHAE)

HSP 1 Score: 221 bits (562), Expect = 3.850e-64
Identity = 98/157 (62.42%), Postives = 121/157 (77.07%), Query Frame = 3
Query:   63 TDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPP 533
            T D G C F Q+CFQ G+DT CT    A  ++A  FPMD++HGFGV H+ VWDGS  DP TGLC  G PD  GRC + F  PKGL  VAP++CP+++D+GCC+WQ N++LY+NLG LV++FGS+TGCLACAVNLV FWCALVCSP QG FA++HDPP
Sbjct:  151 TVDAGQCAFTQECFQFGLDTDCTPIP-AEGDTAVSFPMDSSHGFGVFHDKVWDGSVEDPSTGLCDEGRPDSDGRCIVDFVAPKGLKDVAPIICPQYKDSGCCSWQQNYALYQNLGLLVESFGSTTGCLACAVNLVNFWCALVCSPDQGAFASMHDPP 306          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: K3X0G1_GLOUD (NPC1_N domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0G1_GLOUD)

HSP 1 Score: 144 bits (363), Expect = 6.800e-35
Identity = 90/249 (36.14%), Postives = 123/249 (49.40%), Query Frame = 3
Query:   72 DGVCTFRQDCFQTG----VDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGADT-EVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFL------STTNASDADA 773
            D  C   Q C   G     D AC    +A    A P PM  A    V       G       G C +G       C            +  + CP+++DA CC+WQ N ++  N   L  TF ++ G  C ACAVNL+  WC L+CSP Q  F  +H P  ++  R D +TG +  +VL+ D+ +D    CA+Y+SC+ TAI   A  M+S+LG L +QMQTGA+GHG+Y  L      +TT A+ ADA
Sbjct:   27 DAKCAMTQTCVNPGNVPDYD-ACIPEAHAV--PADPQPMRGASWANVTGGGACKGDSDCNSKGSCTNGA----CACLNDGIVAGAHCELFAIQCPEYKDAACCSWQQNQAMAENFKVLANTFANNDGGGCDACAVNLLNLWCGLMCSPHQADFMRMHLPFPSINHRLDPMTGEENVKVLEMDVTLDKPFTCALYDSCKNTAIASVAEGMKSSLGFLNYQMQTGAIGHGEYMLLHFTSANTTTKATSADA 268          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A8K1CL61_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CL61_PYTOL)

HSP 1 Score: 142 bits (358), Expect = 2.660e-34
Identity = 79/214 (36.92%), Postives = 112/214 (52.34%), Query Frame = 3
Query:  159 ATPFPMDAAHGFGVPHNVVWDGSYVDPDT----GLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSST--GCLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADA 773
            A P P+D     G     V  G     D     G C  G       CQ+   T         + CP+++DA CC+WQ N +L +N   +   FG ++  GC ACA NL+  WC ++CSPRQ  F  +H   P  + R D +TG D  +VL+ D+ +     CA+++SC+ TAI   + AM+S+LG L +QMQTGA+GHG+Y  L     S+A A
Sbjct:   50 ANPMPVDPKPMTGAGWANVTGGGACTTDKECNKGACVRGN----CVCQVDGMTAGAHCDDFAIQCPEYKDAACCSWQQNQALAQNFKLVTTIFGKNSVGGCDACATNLLELWCGMICSPRQSEFMKMHLPYPSNSYRPDPMTGKDHVKVLEMDVTLAKDFTCAVFDSCKNTAIASVSEAMKSSLGFLNYQMQTGAIGHGEYMHLHFNATSNATA 259          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A2D4C7W7_PYTIN (NPC1_N domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C7W7_PYTIN)

HSP 1 Score: 139 bits (350), Expect = 2.100e-33
Identity = 83/213 (38.97%), Postives = 116/213 (54.46%), Query Frame = 3
Query:  165 PFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVA-----PLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGADT-EVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADA 773
            P P     G G   NV   G+ V  D      G   E  RC+ P +   GL+  A      + CP+ +DA CCTWQ N  + +N   L   FG + G  C ACA NL++ WC LVCSPRQ  F  +H P  ++  R+D +T  D  +VL+ D+ +     CA+++SC+ TAI   + AM+S+LG L +Q QTGA+GHG+Y +L     S+A A
Sbjct:   25 PVPPQPMQGPGWA-NVTGGGACVTDDDCGHKKGKCVEK-RCECPQD---GLTAGAHCDAYAIQCPEHKDAACCTWQQNEGIAQNFKLLASVFGQNDGGGCDACAANLMQLWCGLVCSPRQDEFMKMHLPYPSINHRKDPMTDKDNVKVLELDVTLSKSFTCALFDSCKNTAIASVSEAMKSSLGFLNYQAQTGAIGHGEYMYLHFNATSNATA 232          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: H3H0H3_PHYRM (NPC1_N domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H0H3_PHYRM)

HSP 1 Score: 127 bits (319), Expect = 1.210e-29
Identity = 62/150 (41.33%), Postives = 89/150 (59.33%), Query Frame = 3
Query:  333 LMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVHDPPRAV--RRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
            + CP ++D  CC+WQ N ++  N   +   F   S+ GC ACA NL+  WC LVCSP Q  F  +  P  +   R D +TG +  +VL+ D+ +D    CA+++SC+ TA+   A AM+S+LG L +QMQ GAVGHG+Y  L    + DA
Sbjct:  104 IQCPAYKDDACCSWQQNQAMAENFKLVASVFAKNSAGGCDACAANLMNLWCGLVCSPEQDQFMQMAHPWPSTNYRPDPMTGKEKVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEYISLKFNASKDA 253          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A662XWU5_9STRA (NPC1_N domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XWU5_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.650e-29
Identity = 61/150 (40.67%), Postives = 90/150 (60.00%), Query Frame = 3
Query:  333 LMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVHDP--PRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
            + CP ++D  CC+WQ N ++  N   +   F   S+ GC ACA NL+  WC LVCSP Q  F  +  P      R D +TG +  +VL+ D+ +D    CA+++SC+ TA+   A AM+S+LG L +QMQ GAVGHG++  L+   ++DA
Sbjct:   12 IQCPAYKDDACCSWQQNRAMAENFQLVASVFARNSAGGCDACAANLMNLWCGLVCSPAQDQFMQLAHPWPSTTYRPDPMTGKERVKVLELDVALDKDFTCAVFDSCKNTAMASMAAAMKSSLGFLNYQMQVGAVGHGEFITLAFNASADA 161          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A5D6YG03_9STRA (NPC1_N domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YG03_9STRA)

HSP 1 Score: 127 bits (319), Expect = 7.350e-29
Identity = 77/237 (32.49%), Postives = 111/237 (46.84%), Query Frame = 3
Query:   81 CTFRQDCFQTGVDT---ACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTG--CLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDA 767
            C   Q C   G +    AC    +   E   P PM       V             D G C  GT      C+           +  + CP+++DA CC+WQ N  +  N   +   FG ++G  C ACA N++  WC L CSPRQ  F  +    P  + R D +TG +  +VL+  + +D    C +++SCR TAI   + AM+S+LG L +Q+QTGAVGHGQ+  L   + + A
Sbjct:   22 CAMTQTCVNPGNEPDFDACIPEAH--REPVDPQPMVGPQWANVTGGGACTTDADCSDKGECVRGT----CACRDEGMVAGAHCELFAIQCPEYKDAACCSWQQNQGMAENFKLVASVFGKNSGGGCDACAANVLSLWCGLTCSPRQHEFLQMRLPFPSTSYRPDPMTGEERVKVLELAVTLDKAFTCRLFDSCRNTAIASMSEAMKSSLGFLNYQVQTGAVGHGQFISLRFADGAQA 252          
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Match: A0A067D0Z9_SAPPC (NPC1_N domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067D0Z9_SAPPC)

HSP 1 Score: 126 bits (316), Expect = 1.630e-28
Identity = 83/230 (36.09%), Postives = 114/230 (49.57%), Query Frame = 3
Query:   81 CTFRQDCFQTG----VDTACTARTYAANESATPFPMDAAHGFGVPHNVVWDGSYVDPDTGLCASGT-PDEVGRCQIPFETPKGLSPVAPLMCPKFQDAGCCTWQANWSLYRNLGTLVQTFG--SSTGCLACAVNLVRFWCALVCSPRQGHFATVH--DPPRAVRRDDLTGAD-TEVLQGDIMVDAGLVCAIYESCRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFF 740
            C   QDC   G     D AC  +  A+   A P PM      G     V  G     DT  C  GT   +   C+    T         + CP+++ + CC+WQ N +L  N   +   FG  S+ GC ACA N++R WC LVC+P Q  F  +H   P    R D +TG D  +VL+ D+ +     CA+++SC+ TAI   + A +S+LG L +Q QTGAVGHG+Y F
Sbjct:   23 CVMTQDCVNPGNIPDYD-ACIPKALAS--VAPPMPMR-----GDGWATVTGGGTCKADTD-CHQGTCVKKACVCRNDGVTAGAHCDDFAIQCPEYESSACCSWQQNRALADNFKLIATMFGRNSAGGCDACAANMMRMWCGLVCAPNQADFMKMHLPYPSNNYRLDSMTGKDHVKVLEMDVNLAKPFTCALFDSCKHTAIASMSDAFKSSLGFLNYQGQTGAVGHGEYLF 243          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6105.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FMI8_ECTSI9.280e-11946.23NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YTW9_9STRA9.700e-9660.79NPC1_N domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5KYY4_9PHAE3.850e-6462.42NPC1_N domain-containing protein n=1 Tax=Ectocarpu... [more]
K3X0G1_GLOUD6.800e-3536.14NPC1_N domain-containing protein n=1 Tax=Globispor... [more]
A0A8K1CL61_PYTOL2.660e-3436.92Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4C7W7_PYTIN2.100e-3338.97NPC1_N domain-containing protein n=1 Tax=Pythium i... [more]
H3H0H3_PHYRM1.210e-2941.33NPC1_N domain-containing protein n=1 Tax=Phytophth... [more]
A0A662XWU5_9STRA1.650e-2940.67NPC1_N domain-containing protein n=1 Tax=Nothophyt... [more]
A0A5D6YG03_9STRA7.350e-2932.49NPC1_N domain-containing protein n=1 Tax=Pythium b... [more]
A0A067D0Z9_SAPPC1.630e-2836.09NPC1_N domain-containing protein n=2 Tax=Saprolegn... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6105contigP-wetherbeei_contig6105:418..3137 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FMI8
PFAMsNPC1_N
Model size1564
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue9.63e-123
EggNOG OGs28I52@1|root,2QQFF@2759|Eukaryota
DescriptionNiemann-Pick C1 N terminus
Cds size1335
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6105.1.1prot_P-wetherbeei_contig6105.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6105 615..3105 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.8825545-UTR-P-wetherbeei_contig6105:417..6141683186888.8825545-UTR-P-wetherbeei_contig6105:417..614Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6105 418..614 -
1683186888.933776-UTR-P-wetherbeei_contig6105:3105..31371683186888.933776-UTR-P-wetherbeei_contig6105:3105..3137Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6105 3106..3137 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186888.8948076-CDS-P-wetherbeei_contig6105:614..8041683186888.8948076-CDS-P-wetherbeei_contig6105:614..804Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6105 615..804 -
1683186888.902787-CDS-P-wetherbeei_contig6105:1179..17811683186888.902787-CDS-P-wetherbeei_contig6105:1179..1781Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6105 1180..1781 -
1683186888.9106355-CDS-P-wetherbeei_contig6105:2022..21761683186888.9106355-CDS-P-wetherbeei_contig6105:2022..2176Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6105 2023..2176 -
1683186888.918287-CDS-P-wetherbeei_contig6105:2465..27911683186888.918287-CDS-P-wetherbeei_contig6105:2465..2791Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6105 2466..2791 -
1683186888.9260361-CDS-P-wetherbeei_contig6105:3042..31051683186888.9260361-CDS-P-wetherbeei_contig6105:3042..3105Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6105 3043..3105 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6105.1.1

>prot_P-wetherbeei_contig6105.1.1 ID=prot_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=445bp
MMASAPHGVDTDDDGVCTFRQDCFQTGVDTACTARTYAANESATPFPMDA
AHGFGVPHNVVWDGSYVDPDTGLCASGTPDEVGRCQIPFETPKGLSPVAP
LMCPKFQDAGCCTWQANWSLYRNLGTLVQTFGSSTGCLACAVNLVRFWCA
LVCSPRQGHFATVHDPPRAVRRDDLTGADTEVLQGDIMVDAGLVCAIYES
CRGTAIVGEATAMQSALGLLKFQMQTGAVGHGQYFFLSTTNASDADANGG
GGDDDGGGVSRSLCDGSGCGDRTGEVAAGCKGFRREERTAMRLAAPEMGH
QPSTAAMAITATARKGDELDVTVALEGSAVTAAAVTAATAALGGGKEALT
EEALACDSFWDPGAVTPPFLYPPPRERRIGCGCEYCPAACAAGGGPGGLD
EDDLRMSVFGSFNAALVGLWYATVASACVALAWWRRQRRRGGAA*
back to top

mRNA from alignment at P-wetherbeei_contig6105:418..3137-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6105.1.1 ID=mRNA_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2720bp|location=Sequence derived from alignment at P-wetherbeei_contig6105:418..3137- (Phaeothamnion wetherbeei SAG_119_79)
GCGAAACAGCAAAGAAGAAAGAAAGCGTTTTTATGATGGCTTCGGCCCCC CACGGTGTCGACACCGACGATGACGGCGTCTGCACCTTTCGCCAGGTATT CATAGCCGTTGCGCTTTCAAACTTGCTTTTTTCTCTCCCTTGGTTCTTTC TCGCCCCAGGCTTTCTCAACGGCATCTCAGAGTGGTTGACGGCGGATTGC AGGATATAGCAAGATACCCCTGTCGCACGCTTTGCGGCGATGTGTATCTA GTTCTTATGGATGGCTTGGTGTGACCTTGATGACACATTTTTTCCTTCGA AATGATATGACAAGGACGTAGATACTCGACCCATTCCAATGCGCAGGACT GCTTTCAAACTGGCGTGGACACGGCCTGCACCGCCCGGACCTACGCCGCC AATGAATCTGCAACTCCTTTCCCGATGGACGCAGCCCATGGCTTTGGCGT CCCTCACAACGTCGTGTGGGACGGCTCGTACGTCGACCCCGACACTGGCC TCTGCGCCAGCGGCACCCCGGACGAGGTCGGGCGGTGCCAGATACCCTTT GAGACGCCGAAGGGACTCTCGCCGGTTGCGCCACTCATGTGTCCGAAATT CCAGGATGCCGGCTGCTGCACATGGCAGGCGAACTGGAGCTTGTACCGGA ATTTAGGCACGCTTGTGCAAACGTGAGCTAGCATTGGCGAAGGGACGATG CTATAATTGGTCTTTCTTTTCCGCCGTTGTCGTTGCCAAATTTCGCATCT AACACCACCAAGTCTTAAACCTCCTCGTTTCTTGGAGGCTTGCTTTCTGA CTTTCTTGTGGAGTGATTATTCTTCTCAACCCCTTCGAGTTGTCGGCTCT TCCAGCAAAAGCTTTCCATCTCCCGCCTTGCGGCGTTGCCACGATTATCC TTCGCCCGTCATGCGTCCTTTTCCCACCTTCGCCGCCGTTCTCTTTCCCG TTCTCCCTCAGGTTTGGCTCCTCCACTGGTTGCCTGGCGTGCGCCGTGAA CCTGGTGCGTTTCTGGTGCGCCCTCGTCTGCTCGCCGCGGCAGGGCCACT TCGCCACCGTGCACGACCCGCCGCGGGCCGTCCGCCGGGACGACCTTACC GGAGCCGACACGGAGGTGCGACAGGTTTTTCCTGCTGATTTTGCTAGCAT TCTTTGGTAAGGGCTGCGTTCCCATGACAGCCGGCGCGCTGCCATCCGCG TCATTATTCTCTGTTTTCCGCTGCCTCGCCCATCTCATCGCTGTCGCCGC CGACATCGTGCATTCCTGCGGCCGCTTCCGCCTGACATTTCTGCCGCAGT CGCCGCTGCCACCGTTTCCATTCTCGACTATCGTCCACCTTCCCGTCCTT CGCCAGGTGCTGCAGGGAGACATCATGGTGGACGCGGGCCTTGTGTGCGC CATCTACGAGTCGTGCCGTGGCACCGCGATCGTCGGGGAGGCCACCGCCA TGCAATCTGCGCTCGGGCTGCTGAAGTTCCAGATGCAAACGGGCGCGGTC GGCCACGGCCAGTACTTCTTCCTCAGCACGACAAATGCTTCCGATGCTGA CGCAAATGGTGGCGGCGGCGACGACGACGGCGGCGGCGTCAGCCGTTCTC TGTGCGACGGCAGTGGCTGCGGCGACCGGACAGGAGAAGTAGCGGCGGGC TGCAAGGGCTTTCGGCGGGAAGAAAGAACGGCAATGCGGCTTGCGGCGCC GGAGATGGGGCATCAGCCATCAACCGCGGCGATGGCGATTACAGCGACGG CGCGCAAGGGCGATGAACTGGACGTGACGGTGGCTTTAGAGGGTTCGGCG GTGACGGCGGCGGCGGTGACGGCAGCGACGGCGGCGTTGGGCGGAGGAAA GGAAGCTTTGACCGAGGAGGCGCTGGCCTGCGACAGCTTTTGGGACCCGG GGGCTGTGACGCCGCCATTTCTGTACCCACCGCCCCGGGAACGGCGCATC GGATGCGGGTGAGTTCATCCTTGTCTCGTTGTTCGACACTTGGCTTACAC GGGGCAGATCCTTCTTTTTGTGAATACAGAACTTGTGACTGGCGCTTCTG CAAGGGTTCTTTCCCGTCTTCAGTTTGTAGACGCATTACGTTTCCTCTGT TGCGCGCCGCGCCATTTTTAAACATCAATCTATCTACTCTTCCTTCGATC CACGGAACCTGCCGTCAATTTTGCGGGCTCTCGTAGCTTTTCTCGAGTAT CGGCAAGCTTCTTCTCACATCCCTACATGCAGCGCCGAATACTTCTCTTC CTTCTGTGCCCCCATTCCTTTTTGAAAACCGAAAAACCACCGGCGGGAAC GGCGGGAAAACACATGCACACTCCCAAAACCAGGTGCGAGTACTGCCCGG CGGCCTGCGCGGCCGGCGGCGGGCCCGGAGGACTCGACGAGGATGACCTA CGGATGTCTGTCTTTGGCAGTTTCAACGCCGCTCTTGTCGGGTTGTGGTA CGCCACCGTCGCCTCTGCCTGTGTCGCCCTGGCGTGGTGGCGCCGCCAGC GGCGGCGGGGCGGCGCCGCTTGATGAAACGGGCGGCGGCGGCACATGGAA GGAGGCATATGAAGGGGAGAGAATTTCTGATGGTCTGCTACGTTCCGGAC GACTTATGCCCAAGTGGGTTGCGTGGCGGCGGCGCGACAAGGGCAATGGC ACTCAACGCCACTGCTGCAGTTTGTAAGTGTTTTGAGTAACACGAACTCC TGTAATGAAATGAAAATGAC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6105:418..3137-

>mRNA_P-wetherbeei_contig6105.1.1 ID=mRNA_P-wetherbeei_contig6105.1.1|Name=mRNA_P-wetherbeei_contig6105.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1335bp|location=Sequence derived from alignment at P-wetherbeei_contig6105:418..3137- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGGCTTCGGCCCCCCACGGTGTCGACACCGACGATGACGGCGTCTG
CACCTTTCGCCAGGACTGCTTTCAAACTGGCGTGGACACGGCCTGCACCG
CCCGGACCTACGCCGCCAATGAATCTGCAACTCCTTTCCCGATGGACGCA
GCCCATGGCTTTGGCGTCCCTCACAACGTCGTGTGGGACGGCTCGTACGT
CGACCCCGACACTGGCCTCTGCGCCAGCGGCACCCCGGACGAGGTCGGGC
GGTGCCAGATACCCTTTGAGACGCCGAAGGGACTCTCGCCGGTTGCGCCA
CTCATGTGTCCGAAATTCCAGGATGCCGGCTGCTGCACATGGCAGGCGAA
CTGGAGCTTGTACCGGAATTTAGGCACGCTTGTGCAAACGTTTGGCTCCT
CCACTGGTTGCCTGGCGTGCGCCGTGAACCTGGTGCGTTTCTGGTGCGCC
CTCGTCTGCTCGCCGCGGCAGGGCCACTTCGCCACCGTGCACGACCCGCC
GCGGGCCGTCCGCCGGGACGACCTTACCGGAGCCGACACGGAGGTGCTGC
AGGGAGACATCATGGTGGACGCGGGCCTTGTGTGCGCCATCTACGAGTCG
TGCCGTGGCACCGCGATCGTCGGGGAGGCCACCGCCATGCAATCTGCGCT
CGGGCTGCTGAAGTTCCAGATGCAAACGGGCGCGGTCGGCCACGGCCAGT
ACTTCTTCCTCAGCACGACAAATGCTTCCGATGCTGACGCAAATGGTGGC
GGCGGCGACGACGACGGCGGCGGCGTCAGCCGTTCTCTGTGCGACGGCAG
TGGCTGCGGCGACCGGACAGGAGAAGTAGCGGCGGGCTGCAAGGGCTTTC
GGCGGGAAGAAAGAACGGCAATGCGGCTTGCGGCGCCGGAGATGGGGCAT
CAGCCATCAACCGCGGCGATGGCGATTACAGCGACGGCGCGCAAGGGCGA
TGAACTGGACGTGACGGTGGCTTTAGAGGGTTCGGCGGTGACGGCGGCGG
CGGTGACGGCAGCGACGGCGGCGTTGGGCGGAGGAAAGGAAGCTTTGACC
GAGGAGGCGCTGGCCTGCGACAGCTTTTGGGACCCGGGGGCTGTGACGCC
GCCATTTCTGTACCCACCGCCCCGGGAACGGCGCATCGGATGCGGGTGCG
AGTACTGCCCGGCGGCCTGCGCGGCCGGCGGCGGGCCCGGAGGACTCGAC
GAGGATGACCTACGGATGTCTGTCTTTGGCAGTTTCAACGCCGCTCTTGT
CGGGTTGTGGTACGCCACCGTCGCCTCTGCCTGTGTCGCCCTGGCGTGGT
GGCGCCGCCAGCGGCGGCGGGGCGGCGCCGCTTGA
back to top