mRNA_P-wetherbeei_contig12684.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig12684.1.1
Unique NamemRNA_P-wetherbeei_contig12684.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: A0A1S7NUZ1_RHIRD (Uncharacterized protein n=3 Tax=Rhizobium radiobacter TaxID=358 RepID=A0A1S7NUZ1_RHIRD)

HSP 1 Score: 65.1 bits (157), Expect = 1.080e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 HSPKQMVGPGRLELPTPRLSSVCSNQLSYGPI 96
            HS  QMVGPGRLELPTPRLSSVCSNQLSYGPI
Sbjct:   36 HSHMQMVGPGRLELPTPRLSSVCSNQLSYGPI 67
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: A0A1S7U9J2_9HYPH (Uncharacterized protein n=1 Tax=Agrobacterium salinitolerans str. Hayward 0363 TaxID=1183434 RepID=A0A1S7U9J2_9HYPH)

HSP 1 Score: 65.1 bits (157), Expect = 2.160e-11
Identity = 30/32 (93.75%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:    1 HSPKQMVGPGRLELPTPRLSSVCSNQLSYGPI 96
            HS  QMVGPGRLELPTPRLSSVCSNQLSYGPI
Sbjct:   36 HSHMQMVGPGRLELPTPRLSSVCSNQLSYGPI 67
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI001A8CC5EA (hypothetical protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=UPI001A8CC5EA)

HSP 1 Score: 60.8 bits (146), Expect = 4.460e-10
Identity = 38/91 (41.76%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   31 RLELPTPRLSSVCSNQLSYGPIQSNRSCGFLSS*RKRNVVGGNRHTVMMRTSIRRIA-FRSSPDWCDLCSKKHGKVHTGPHLAMRAGRLAI 300
            RLELPTPRLSSVCSNQLSYGPI+   +  F     +          + +    R +  F         CSKKHGKVHT     ++ GRL +
Sbjct:    1 RLELPTPRLSSVCSNQLSYGPIREPVNAVFCLHEERETWTATLAIPIRVPKYFRGVLRFDGRLTGAIYCSKKHGKVHT-----IQDGRLTV 86
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI001AED62B1 (hypothetical protein n=1 Tax=Rhizobium sp. BK619 TaxID=2586989 RepID=UPI001AED62B1)

HSP 1 Score: 59.3 bits (142), Expect = 8.840e-10
Identity = 31/48 (64.58%), Postives = 35/48 (72.92%), Query Frame = 2 
Query:  128 LEERETWSAETA----IP**CEHLSGVLRFDRHLTGAIYVLKSTGRFI 259
             EERETW+A+      +P   +H  GVLRFD HLTGAIYVLKSTGRFI
Sbjct:   12 FEERETWTAKARHTIRMP---KHFRGVLRFDGHLTGAIYVLKSTGRFI 56
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI00196A1634 (hypothetical protein n=1 Tax=Rhizobium sp. Pop5 TaxID=1223565 RepID=UPI00196A1634)

HSP 1 Score: 59.3 bits (142), Expect = 1.050e-9
Identity = 33/59 (55.93%), Postives = 40/59 (67.80%), Query Frame = 2 
Query:  125 LLEERETWSAETAIP**C-EHLSGVLRFDRHLTGAIYVLKSTGRFIPGHILRCVPVVLP 298
            L+++ +    + AIP  C  H  GVLRFD HLTGAIYVLKSTGRFI G   +  P+VLP
Sbjct:    6 LVKKEKRGRRKLAIPSECLRHFRGVLRFDGHLTGAIYVLKSTGRFISGDP-KIRPIVLP 63
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: A0A2K9ZA44_RHILE (Uncharacterized protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=A0A2K9ZA44_RHILE)

HSP 1 Score: 53.9 bits (128), Expect = 1.060e-7
Identity = 28/37 (75.68%), Postives = 29/37 (78.38%), Query Frame = 2 
Query:  191 GVLRFDRHLTGAIYVLKSTGRFIPGHILR-CVPVVLP 298
            GVLRFD HLTGAIYVLKSTGRFIP    + C  VVLP
Sbjct:   16 GVLRFDSHLTGAIYVLKSTGRFIPRDKSKTCRKVVLP 52
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI00195455F3 (hypothetical protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI00195455F3)

HSP 1 Score: 53.1 bits (126), Expect = 2.200e-7
Identity = 28/54 (51.85%), Postives = 32/54 (59.26%), Query Frame = -3 
Query:   96 TFPCFLEHRSHQSGDDRNAIRRIDVRIITVWRFPPTTFLFLQEDKKPHDRF-DW 254
            TFPCFLEHR HQSGD RN IRR D     +  F    F F ++ K   DRF +W
Sbjct:    1 TFPCFLEHRWHQSGDYRNVIRRDDFGHDGMASFRRPRFSFFKKTKNRVDRFPEW 54
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI001AEDD856 (hypothetical protein n=1 Tax=Agrobacterium rosae TaxID=1972867 RepID=UPI001AEDD856)

HSP 1 Score: 50.8 bits (120), Expect = 2.200e-6
Identity = 27/48 (56.25%), Postives = 31/48 (64.58%), Query Frame = 2 
Query:  113 AVFCLLEERETWSAETAIP**C-EHLSGVLRFDRHLTGAIYVLKSTGR 253
            AVFCL EERETW+A  AIP    ++  GVL  D  LTGAIY  K  G+
Sbjct:    6 AVFCLHEERETWTATLAIPIRVPKYFRGVLHCDGRLTGAIYCSKKHGK 53
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: UPI001AEC5A1E (hypothetical protein n=1 Tax=Rhizobium leguminosarum TaxID=384 RepID=UPI001AEC5A1E)

HSP 1 Score: 47.4 bits (111), Expect = 4.640e-5
Identity = 22/29 (75.86%), Postives = 23/29 (79.31%), Query Frame = 2 
Query:  185 LSGVLRFDRHLTGAIYVLKSTGRFIPGHI 271
            L  VLRFD HLTGAIYVLKSTGRFI   +
Sbjct:   14 LCSVLRFDGHLTGAIYVLKSTGRFISRQV 42
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BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Match: E0XUM0_9BACT (Uncharacterized protein n=1 Tax=uncultured Acidobacteriales bacterium HF0200_23L05 TaxID=710732 RepID=E0XUM0_9BACT)

HSP 1 Score: 46.6 bits (109), Expect = 8.870e-5
Identity = 21/25 (84.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:   19 VGPGRLELPTPRLSSVCSNQLSYGP 93
            +G GR ELPTPRLSSVCSNQLSY P
Sbjct:    1 MGLGRFELPTPRLSSVCSNQLSYRP 25
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig12684.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1S7NUZ1_RHIRD1.080e-1193.75Uncharacterized protein n=3 Tax=Rhizobium radiobac... [more]
A0A1S7U9J2_9HYPH2.160e-1193.75Uncharacterized protein n=1 Tax=Agrobacterium sali... [more]
UPI001A8CC5EA4.460e-1041.76hypothetical protein n=1 Tax=Agrobacterium rosae T... [more]
UPI001AED62B18.840e-1064.58hypothetical protein n=1 Tax=Rhizobium sp. BK619 T... [more]
UPI00196A16341.050e-955.93hypothetical protein n=1 Tax=Rhizobium sp. Pop5 Ta... [more]
A0A2K9ZA44_RHILE1.060e-775.68Uncharacterized protein n=1 Tax=Rhizobium legumino... [more]
UPI00195455F32.200e-751.85hypothetical protein n=1 Tax=Rhizobium leguminosar... [more]
UPI001AEDD8562.200e-656.25hypothetical protein n=1 Tax=Agrobacterium rosae T... [more]
UPI001AEC5A1E4.640e-575.86hypothetical protein n=1 Tax=Rhizobium leguminosar... [more]
E0XUM0_9BACT8.870e-584.00Uncharacterized protein n=1 Tax=uncultured Acidoba... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig12684contigP-wetherbeei_contig12684:76..376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog202955.BBND01000043_gene1756
Model size301
Max annot lvl1236|Gammaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue0.00013
EggNOG OGs2E4EA@1|root,32Z9I@2|Bacteria,1N7HE@1224|Proteobacteria,1SDU5@1236|Gammaproteobacteria,3NP71@468|Moraxellaceae
Cds size117
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.6053884-UTR-P-wetherbeei_contig12684:75..2441683185956.6053884-UTR-P-wetherbeei_contig12684:75..244Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12684 76..244 -
1683185956.6232402-UTR-P-wetherbeei_contig12684:361..3761683185956.6232402-UTR-P-wetherbeei_contig12684:361..376Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig12684 362..376 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683185956.614946-CDS-P-wetherbeei_contig12684:244..3611683185956.614946-CDS-P-wetherbeei_contig12684:244..361Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig12684 245..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig12684.1.1prot_P-wetherbeei_contig12684.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig12684 245..361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig12684.1.1

>prot_P-wetherbeei_contig12684.1.1 ID=prot_P-wetherbeei_contig12684.1.1|Name=mRNA_P-wetherbeei_contig12684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=39bp
MVGPGRLELPTPRLSSVCSNQLSYGPIQSNRSCGFLSS*
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mRNA from alignment at P-wetherbeei_contig12684:76..376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig12684.1.1 ID=mRNA_P-wetherbeei_contig12684.1.1|Name=mRNA_P-wetherbeei_contig12684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=301bp|location=Sequence derived from alignment at P-wetherbeei_contig12684:76..376- (Phaeothamnion wetherbeei SAG_119_79)
CATTCGCCTAAACAAATGGTGGGCCCGGGTAGACTCGAACTACCGACCCC
ACGCTTATCAAGCGTGTGCTCTAACCAACTGAGCTACGGGCCCATCCAGT
CAAACCGGTCGTGCGGTTTTTTGTCTTCTTGAAGAAAGAGAAACGTGGTC
GGCGGAAACCGCCATACCGTGATGATGCGAACATCTATCCGGCGTATTGC
GTTTCGATCGTCACCTGACTGGTGCGATCTATGTTCTAAAAAGCACGGGA
AGGTTCATACCGGGCCACATCTTGCGATGCGTGCCGGTCGTCTTGCCATT
C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig12684:76..376-

>mRNA_P-wetherbeei_contig12684.1.1 ID=mRNA_P-wetherbeei_contig12684.1.1|Name=mRNA_P-wetherbeei_contig12684.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=117bp|location=Sequence derived from alignment at P-wetherbeei_contig12684:76..376- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGGCCCGGGTAGACTCGAACTACCGACCCCACGCTTATCAAGCGT
GTGCTCTAACCAACTGAGCTACGGGCCCATCCAGTCAAACCGGTCGTGCG
GTTTTTTGTCTTCTTGA
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