mRNA_P-wetherbeei_contig6052.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6052.1.1
Unique NamemRNA_P-wetherbeei_contig6052.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: D7FQ58_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ58_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 5.670e-34
Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1
Query:    1 NAARLVAALRALRMDMGLVADDVLKPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSPDFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            NA++L+ A+  L++D GL  +D+L  S RD VLL LHLFQ LPQ+VPR EVEF A LG +  K +EL+NP ++ ++Y+VT+ GS DFR     V L PG  A+F VEL+PRF+ PV  RLTFWA R
Sbjct: 1994 NASKLLTAMGKLKVDYGLGVEDILDLSDRDGVLLALHLFQSLPQLVPRTEVEFRANLGSVVSKSIELKNPSSKSIKYDVTLEGSTDFRANGKEVHLEPGKEAEFTVELLPRFSSPVEARLTFWAAR 2119          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A835Z976_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z976_9STRA)

HSP 1 Score: 108 bits (271), Expect = 4.450e-25
Identity = 61/124 (49.19%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   25 LRALRMDMGLVADDVL---KPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTV--AGSPDFRLPETRVTLPPGGAADFVVELM-PRFTRPVTGRLTFWATR 378
            LRALR DMG+  +DV    +  GRD +LL+LHLF  LPQ+VP+  +EF A LG  +RK +E+RNP  R ++Y VT+  AGS DFR    R+ +  GG A+  V+L+  RF  PV  RLT WA R
Sbjct: 1286 LRALRCDMGVTVEDVTYGGRGGGRDALLLLLHLFAALPQLVPKTVIEFRAALGGSARKSIEIRNPSERDIQYEVTLEGAGSGDFRAHAARLLIEAGGTAEIAVDLVRARFAAPVEARLTCWALR 1409          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A7S3UN52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UN52_HETAK)

HSP 1 Score: 91.3 bits (225), Expect = 1.610e-21
Identity = 44/97 (45.36%), Postives = 66/97 (68.04%), Query Frame = 1
Query:   58 ADDVLKPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRP-VEYNVTVAGSPDFRLPETRVTLPPGGAADFVVELMPRFTRP 345
            AD + +  GR  +LLVLHL+ +LPQ+VP+  +EF +TLG+ S K +ELRNP  R  +EY V + G+  F + + RV +PPG  A F V+++P+F+ P
Sbjct:    1 ADGLAEMDGRCYLLLVLHLYLNLPQLVPKTTIEFPSTLGVESYKSIELRNPNRRAAIEYEVQLEGATSFSVQDQRVAIPPGAVAQFPVKVLPKFSHP 97          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A7S3H9K5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9K5_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-20
Identity = 47/119 (39.50%), Postives = 75/119 (63.03%), Query Frame = 1
Query:   22 ALRALRMDMGLVADDVLKPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSPDFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            A++ LRM++    +D+   S R ++L+VLH++ +LP +VP+ +VEF   LG    K +EL+NP  R +EY+VT+AG+ DF    T + + P  +A F+V L  +F  P   +LTFWA +
Sbjct:   72 AMQELRMELSTTYEDITF-STRSILLMVLHMYLNLPNLVPKTKVEFVGDLGTPIMKEIELKNPSRRTIEYSVTLAGNNDFTAQSTSLVIAPESSAVFLVTLNAKFVDPAYAKLTFWAQK 189          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A1V9ZG56_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZG56_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 2.040e-19
Identity = 55/127 (43.31%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 NAARLVAALRALRMDMGLVADDVLKPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSP-DFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            NAA L  AL  L +D GLV + +   S    VLLVLHL+Q++PQ +P+  +EF   LG    K +EL+NP  + + Y+V + G   +F +    +TL P  +A FVVEL P+FTR V+ RLTF + R
Sbjct: 1693 NAAALRNALSQLGLDYGLVPELLCSLSFPSTVLLVLHLYQNVPQFLPKTTIEFRGVLGQTITKSIELKNPSKKTIVYDVFLEGQVREFSIHAHTLTLEPEKSATFVVELKPKFTRTVSARLTFRSVR 1819          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A662XAQ9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XAQ9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.260e-18
Identity = 54/132 (40.91%), Postives = 73/132 (55.30%), Query Frame = 1
Query:   25 LRALRMDMGLVADDVLKP-SGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSP-------------DFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            L A  +D GL A   L+  SGR+M++L+LHL Q LPQ +P+A +EF   LG L  K +EL+NP  RP+ Y+V + G+              +F +    + L PG    FVV   PRF+R VT RL F A R
Sbjct:  390 LGAFGVDFGLDATRFLRRFSGREMLVLLLHLQQTLPQFIPKATIEFRGGLGQLMEKSIELKNPSARPLRYHVFLDGAEGSTAVGDAANAASEFTIEANELVLEPGKTVAFVVTFRPRFSRKVTARLVFQAVR 521          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A7S1CHU4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CHU4_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.570e-18
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   79 SGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSPDFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            + RD +L  L+L+Q+LPQ++P+ +++F + LG    K +ELRNP  RP+ Y VT+ G+P+FR+   ++ + P G   F +E   RF+ P   +L F + R
Sbjct:   20 NNRDALLAALYLYQNLPQLIPKTQIDFESALGHTVVKTIELRNPTKRPISYMVTLEGAPEFRISSNQLRIDPDGMVAFPIECKSRFSAPCEAQLAFRSKR 119          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A1V9ZZW5_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZZW5_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 3.340e-18
Identity = 49/127 (38.58%), Postives = 77/127 (60.63%), Query Frame = 1
Query:    1 NAARLVAALRALRMDMGLVADDVLKPSGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSP-DFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            NA+ L  AL  L +D GL  + ++  S    +LL+LHL+Q++PQ +P+  +EF   LG   +K +EL+NP  + + Y+V + G   +F +  T +TL P  +A F+V+  P+FTR V  RLTF + R
Sbjct: 1690 NASALRNALSLLGLDYGLAPELLISLSFPSTILLILHLYQNVPQFIPKTTIEFKGILGQTIQKSIELKNPSKKTIVYDVFLEGQVREFTIYATTLTLEPEKSAGFLVDFKPKFTRTVQARLTFRSVR 1816          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: A0A662Y0T1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662Y0T1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.560e-18
Identity = 53/132 (40.15%), Postives = 72/132 (54.55%), Query Frame = 1
Query:   25 LRALRMDMGLVADDVLKP-SGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSP-------------DFRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
            L A  +D GL A   L+  SGR+M++L+LHL Q LPQ +P+A +EF   LG L  K +EL+NP  RP+ Y+V + G+              +F +    + L PG    F V   PRF+R VT RL F A R
Sbjct: 2290 LGAFGVDFGLDATRFLRRFSGREMLVLLLHLQQTLPQFIPKATIEFRGGLGQLMEKSIELKNPSARPLRYHVFLDGAEGSTAVGDAANAASEFTIEANELVLEPGKTVAFAVTFRPRFSRKVTARLVFQAVR 2421          
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Match: D0NT43_PHYIT (Uncharacterized protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NT43_PHYIT)

HSP 1 Score: 89.0 bits (219), Expect = 4.570e-18
Identity = 55/144 (38.19%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    1 NAARLVAALRALRMDMGLVADDVLKP-SGRDMVLLVLHLFQDLPQMVPRAEVEFCATLGLLSRKCVELRNPGTRPVEYNV------------TVAGSPD-----FRLPETRVTLPPGGAADFVVELMPRFTRPVTGRLTFWATR 378
             AA L+  L A  +D G+ +   L+  +GR+M+LL+LHL Q LPQ +P+A +EF   LG +  K +EL+NP T+P+ Y+V            T AG P+     F +    + L PG    F V   PRF+R +T RL F A R
Sbjct: 1876 QAAVLLQTLGAFGLDFGMDSTRFLRGFTGREMLLLLLHLQQTLPQFIPKATIEFKGGLGQVMEKSIELKNPSTKPLRYHVFLDKGDRNSAIGTGAGGPEAAASEFAIEANEIVLDPGKTVAFAVTFRPRFSRKLTARLVFQAAR 2019          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6052.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ58_ECTSI5.670e-3453.97Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A835Z976_9STRA4.450e-2549.19Calponin-homology (CH) domain-containing protein n... [more]
A0A7S3UN52_HETAK1.610e-2145.36Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S3H9K5_9STRA1.200e-2039.50Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A1V9ZG56_9STRA2.040e-1943.31Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A662XAQ9_9STRA1.260e-1840.91Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
A0A7S1CHU4_9STRA1.570e-1838.00Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A1V9ZZW5_9STRA3.340e-1838.58Calponin-homology (CH) domain-containing protein n... [more]
A0A662Y0T1_9STRA4.560e-1840.15Uncharacterized protein (Fragment) n=1 Tax=Nothoph... [more]
D0NT43_PHYIT4.570e-1838.19Uncharacterized protein n=1 Tax=Phytophthora infes... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6052contigP-wetherbeei_contig6052:1885..2489 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ58
Preferred nameCHDC2
PFAMsCH,PapD-like
Model size378
Max annot lvl2759|Eukaryota
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.29e-35
EggNOG OGs2CBV6@1|root,2QQ4Q@2759|Eukaryota
EC4.1.1.105,4.1.1.28
Cds size378
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.765195-CDS-P-wetherbeei_contig6052:1884..21301683186885.765195-CDS-P-wetherbeei_contig6052:1884..2130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6052 1885..2130 -
1683186885.7843795-CDS-P-wetherbeei_contig6052:2357..24891683186885.7843795-CDS-P-wetherbeei_contig6052:2357..2489Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6052 2358..2489 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6052.1.1prot_P-wetherbeei_contig6052.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6052 1885..2489 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6052.1.1

>prot_P-wetherbeei_contig6052.1.1 ID=prot_P-wetherbeei_contig6052.1.1|Name=mRNA_P-wetherbeei_contig6052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=126bp
NAARLVAALRALRMDMGLVADDVLKPSGRDMVLLVLHLFQDLPQMVPRAE
VEFCATLGLLSRKCVELRNPGTRPVEYNVTVAGSPDFRLPETRVTLPPGG
AADFVVELMPRFTRPVTGRLTFWATR
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mRNA from alignment at P-wetherbeei_contig6052:1885..2489-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6052.1.1 ID=mRNA_P-wetherbeei_contig6052.1.1|Name=mRNA_P-wetherbeei_contig6052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=605bp|location=Sequence derived from alignment at P-wetherbeei_contig6052:1885..2489- (Phaeothamnion wetherbeei SAG_119_79)
AACGCCGCGCGGCTTGTGGCTGCGCTGCGGGCGCTGCGAATGGACATGGG ACTCGTCGCAGACGATGTCTTGAAGCCGTCCGGCCGCGACATGGTGCTGC TGGTGCTCCATCTGTTCCAGGATCTCCCGCAGGTGAGGAGGGCCAGTGCC GGGAGCGGCGGCAGATGGCAGCGAAAATTGCGGCGGTGGTGCTTGCGGCG GCGGTGAGGGCTGCTACTGAAGCTAGAATGCTTTAAATGGGAAGGCGCGG GGTGCAGCTGTAGAATCGACGTGTTGTGCCCACCTGAACATGACTATCCA TTTATTCAACTACCCTCATAACACCAACCGGTCCCGTACCCGCTGCCCCG CCCCGGCAGATGGTCCCGCGGGCCGAGGTCGAGTTCTGCGCCACGCTTGG CCTTCTCAGCCGCAAGTGCGTTGAGCTCCGCAACCCGGGAACCCGCCCAG TCGAGTACAACGTGACGGTCGCCGGCTCGCCCGACTTCCGGCTCCCGGAG ACGCGCGTCACGCTGCCGCCGGGCGGCGCCGCCGATTTCGTGGTGGAGCT CATGCCCCGCTTCACGCGGCCCGTCACCGGCCGCCTGACCTTTTGGGCCA CGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6052:1885..2489-

>mRNA_P-wetherbeei_contig6052.1.1 ID=mRNA_P-wetherbeei_contig6052.1.1|Name=mRNA_P-wetherbeei_contig6052.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=378bp|location=Sequence derived from alignment at P-wetherbeei_contig6052:1885..2489- (Phaeothamnion wetherbeei SAG_119_79)
AACGCCGCGCGGCTTGTGGCTGCGCTGCGGGCGCTGCGAATGGACATGGG
ACTCGTCGCAGACGATGTCTTGAAGCCGTCCGGCCGCGACATGGTGCTGC
TGGTGCTCCATCTGTTCCAGGATCTCCCGCAGATGGTCCCGCGGGCCGAG
GTCGAGTTCTGCGCCACGCTTGGCCTTCTCAGCCGCAAGTGCGTTGAGCT
CCGCAACCCGGGAACCCGCCCAGTCGAGTACAACGTGACGGTCGCCGGCT
CGCCCGACTTCCGGCTCCCGGAGACGCGCGTCACGCTGCCGCCGGGCGGC
GCCGCCGATTTCGTGGTGGAGCTCATGCCCCGCTTCACGCGGCCCGTCAC
CGGCCGCCTGACCTTTTGGGCCACGCGC
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