mRNA_P-wetherbeei_contig605.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig605.3.1
Unique NamemRNA_P-wetherbeei_contig605.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig605.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig605contigP-wetherbeei_contig605:1481..2021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size543
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.4425433-CDS-P-wetherbeei_contig605:1480..17951683186885.4425433-CDS-P-wetherbeei_contig605:1480..1795Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig605 1481..1795 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.4530792-UTR-P-wetherbeei_contig605:1795..20211683186885.4530792-UTR-P-wetherbeei_contig605:1795..2021Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig605 1796..2021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig605.3.1prot_P-wetherbeei_contig605.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig605 1481..1795 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig605.3.1

>prot_P-wetherbeei_contig605.3.1 ID=prot_P-wetherbeei_contig605.3.1|Name=mRNA_P-wetherbeei_contig605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
SLAVFFSGDASGRRWERRPSARGHDGTRSDRSSHPATAGGDGVCPRAVLG
AGGAVHALASGCRQLAHLHDAGSRRALLPVVATILRNLVLGFVARGRRSA
RDDV*
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mRNA from alignment at P-wetherbeei_contig605:1481..2021+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig605.3.1 ID=mRNA_P-wetherbeei_contig605.3.1|Name=mRNA_P-wetherbeei_contig605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=541bp|location=Sequence derived from alignment at P-wetherbeei_contig605:1481..2021+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTCGCGGTGTTCTTCTCCGGTGATGCCAGCGGAAGGCGCTGGGAGCG
CCGCCCGAGTGCTCGGGGTCATGATGGGACCCGGAGCGACCGAAGCAGTC
ACCCGGCAACGGCTGGTGGAGACGGTGTCTGTCCGCGTGCAGTTCTGGGA
GCGGGTGGCGCTGTCCATGCCCTCGCGAGCGGTTGTCGCCAACTCGCTCA
TCTCCACGACGCTGGCTCACGTCGGGCACTGCTACCCGTGGTAGCCACAA
TTCTACGCAACCTGGTGCTGGGTTTTGTGGCGAGGGGCCGGCGGAGTGCT
AGGGACGACGTGTAGGCGACCGGCGGCTTTGTCGTGCCCACGCGCGCCGA
CCTGCTCTCTCCGCTGCACCTGGGCAGCCTCGCCTTTCTCTGGGCGATGG
CGGGGCAGCAGCGGATGCTGCTGCGGCTCGCGGCAGTCTGGAAAGCTGAC
GGGCCGCTGACGACGTGGCCTGGGCGACGACGGAGGCGCTGGAAACGACC
GCGGCGCCGTGGGGCAACTGCTGCACGCTGCTGCACCGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig605:1481..2021+

>mRNA_P-wetherbeei_contig605.3.1 ID=mRNA_P-wetherbeei_contig605.3.1|Name=mRNA_P-wetherbeei_contig605.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig605:1481..2021+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTCGCGGTGTTCTTCTCCGGTGATGCCAGCGGAAGGCGCTGGGAGCG
CCGCCCGAGTGCTCGGGGTCATGATGGGACCCGGAGCGACCGAAGCAGTC
ACCCGGCAACGGCTGGTGGAGACGGTGTCTGTCCGCGTGCAGTTCTGGGA
GCGGGTGGCGCTGTCCATGCCCTCGCGAGCGGTTGTCGCCAACTCGCTCA
TCTCCACGACGCTGGCTCACGTCGGGCACTGCTACCCGTGGTAGCCACAA
TTCTACGCAACCTGGTGCTGGGTTTTGTGGCGAGGGGCCGGCGGAGTGCT
AGGGACGACGTGTAG
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