mRNA_P-wetherbeei_contig6044.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6044.1.1
Unique NamemRNA_P-wetherbeei_contig6044.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6044contigP-wetherbeei_contig6044:86..833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size612
Hectar predicted targeting categoryother localisation
Exons2
Cds size342
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.0581908-UTR-P-wetherbeei_contig6044:85..2691683186885.0581908-UTR-P-wetherbeei_contig6044:85..269Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6044 86..269 -
1683186885.0834346-UTR-P-wetherbeei_contig6044:747..8331683186885.0834346-UTR-P-wetherbeei_contig6044:747..833Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6044 748..833 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186885.0672278-CDS-P-wetherbeei_contig6044:269..4051683186885.0672278-CDS-P-wetherbeei_contig6044:269..405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6044 270..405 -
1683186885.0753493-CDS-P-wetherbeei_contig6044:541..7471683186885.0753493-CDS-P-wetherbeei_contig6044:541..747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6044 542..747 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6044.1.1prot_P-wetherbeei_contig6044.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6044 270..747 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6044.1.1

>prot_P-wetherbeei_contig6044.1.1 ID=prot_P-wetherbeei_contig6044.1.1|Name=mRNA_P-wetherbeei_contig6044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=114bp
MCRACCAPGQPLPVVGWQRQLVPGRCRAERATLPQPLSPPRPSRAYLVFR
SRRRCRHLPPLLEAPMRPPLGRGCRELLLRTNEQRSHRSFGNHGVPPLPP
VTAASSRDRDGAA*
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mRNA from alignment at P-wetherbeei_contig6044:86..833-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6044.1.1 ID=mRNA_P-wetherbeei_contig6044.1.1|Name=mRNA_P-wetherbeei_contig6044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=748bp|location=Sequence derived from alignment at P-wetherbeei_contig6044:86..833- (Phaeothamnion wetherbeei SAG_119_79)
GGTCACCGGCGGCGGTAGAGCTGTGCTGTCAATTGGGAAGTCCATCAGGC
ACGTCAGCGCTTGCATGGCGAGCGCAAGCAGCCCCCATGTGCCGCGCGTG
CTGCGCTCCCGGGCAGCCACTGCCAGTCGTCGGATGGCAGCGGCAGTTGG
TGCCAGGACGGTGCAGAGCAGAGCGCGCCACGCTGCCGCAGCCTCTCTCG
CCGCCACGGCCTTCGAGAGCTTATCTCGTCTTTCGCTCTCGCCGCCGCTG
CCGCCACCTGCCGCCACTGCTGGAGGCACCGATGCGACCGCCGCAGCGAC
AGCCACAATGATCGCGAGAGCGTTCGAGGCGAAAGATCGGCTCACACGAG
CGGCGGCATCATCAGCAGACGCTGGCTGCGATAACCTCGCCATCGCCGTA
ACCGCCGGCATCCCGATGCCCGCCACAGCCTCGGCCGCGGCTGCCGCGAA
CTCCTTCTCCGCACCAACGAGCAGCGCTCCCATCGTTCCTTCGGCAACCA
TGGAGTGCCACCGCTGCCACCGGTCACTGCTGCCAGTAGCCGGGACCGGG
ACGGTGCCGCCTAACCCATTTGGGGGCATCGTCGCCCTCGATACCACCAG
GGGCGAGCGGGCTGCCACAATTGCCGGCGTGCTGCGAGCTCCGTTGCTGT
TGTCGCGGCTGTAGCCGTTCTCGGTATTCTTGATGCGGCCGCCGCAACTG
CCGGTGCCGTTGGTCTGTCTTGCACCGTACCGTGCAGCTGGCGGATCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6044:86..833-

>mRNA_P-wetherbeei_contig6044.1.1 ID=mRNA_P-wetherbeei_contig6044.1.1|Name=mRNA_P-wetherbeei_contig6044.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=342bp|location=Sequence derived from alignment at P-wetherbeei_contig6044:86..833- (Phaeothamnion wetherbeei SAG_119_79)
ATGTGCCGCGCGTGCTGCGCTCCCGGGCAGCCACTGCCAGTCGTCGGATG
GCAGCGGCAGTTGGTGCCAGGACGGTGCAGAGCAGAGCGCGCCACGCTGC
CGCAGCCTCTCTCGCCGCCACGGCCTTCGAGAGCTTATCTCGTCTTTCGC
TCTCGCCGCCGCTGCCGCCACCTGCCGCCACTGCTGGAGGCACCGATGCG
ACCGCCCCTCGGCCGCGGCTGCCGCGAACTCCTTCTCCGCACCAACGAGC
AGCGCTCCCATCGTTCCTTCGGCAACCATGGAGTGCCACCGCTGCCACCG
GTCACTGCTGCCAGTAGCCGGGACCGGGACGGTGCCGCCTAA
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