mRNA_P-wetherbeei_contig604.3.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig604.3.2
Unique NamemRNA_P-wetherbeei_contig604.3.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: D8LCW3_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW3_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 6.140e-26
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 3 
Query:  126 TSEEEGGGDSYDLSNLGHGECSGFLEKRGSGNCDQWRRRWCVLAGERLWLTRDKNQTGAARFIPLAGVSVRDSSKGLGMANVFELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAVAEHMICDEESSRSRRSN 548
            TSE+E      DL  LG G   G+L+K+   + + WRRRWC+LA +RLWL R K++    R     G      S  L  ++ FELH  + V+ FRAESRAKQVAW+  L+  A+ A+E+ +++VAEHM+CDEE +R RR N
Sbjct:  473 TSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQSGRRR---GGGRSHSFSLALAPSHCFELHSQNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDEEYARCRRLN 610
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: A0A6H5KG66_9PHAE (PH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG66_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 3.120e-24
Identity = 63/151 (41.72%), Postives = 89/151 (58.94%), Query Frame = 3 
Query:  126 TSEEEGGGDSYDLSNLGHGECSGFLEKRGSGNCDQWRRRWCVLAGERLWLTRDKNQTGAAR----------FIPLAGVSVRDSSKGLGMANVFELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAVAEHMICDEESSRSRRSN 548
            TSE+E      DL  LG G   G+L+K+   + + WRRRWC+LA +RLWL R K++    R           + L     R  +     ++ FELH  + V+ FRAESRAKQVAW+  L+  A+ A+E+ +++VAEHM+CDEE +R RR N
Sbjct:  425 TSEDERRAGWIDLRGLGQGHYCGYLQKKSRSDPNLWRRRWCILADDRLWLLRSKSEQSGRRRGGGGRSHSFSLALVPSVARAVNHPTAPSHCFELHSHNRVHTFRAESRAKQVAWVGTLQRHARQAAEDSYMSVAEHMVCDEEYARCRRLN 575
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: A0A835ZFB7_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFB7_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.640e-15
Identity = 48/136 (35.29%), Postives = 75/136 (55.15%), Query Frame = 3 
Query:  159 DLSNLGHGECSGFLEKRGSGNCDQWRRRWCVLAGERLWLTRDK---NQTGAARF-----IPLAGVSVRDSSKGLGMANVFELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAVAEHMICDEESSRSRR 542
            DL+ +G G+ S +L ++   + + WRRRWC L GERL++ + K    + G+        +PLAG +V + S+     +  E+H  H  +  RA++ A    W   L  AA+ A+EN  + VAEH+ICDE  +R  R
Sbjct:  170 DLAYVGQGDLSDYLYRQSQWDRNLWRRRWCTLTGERLYVLKQKPDLKKIGSGTIPNAFSVPLAGSTVLERSRNGASPHALEVHSTHAAHALRAQTPAAARVWAEALAEAARLATENGLLHVAEHIICDETRARCAR 305
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: A0A7S2HEY4_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HEY4_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.920e-12
Identity = 48/134 (35.82%), Postives = 72/134 (53.73%), Query Frame = 3 
Query:  186 CSGFLEKRGSGNCDQWRRRWCVLAGERLWLTRDK--NQTGAARF---IPLAGVSVRDSSKGLGMANVFELHVGHHVYCFRA---ESRAKQVA-----WMAELEHAAQAASENDFIAVAEHMICDEESSRSRRSN 548
            C+GFL KR   + + WR+R+C+LAG++LW  R +     GA  +   IPL    V +  K L +   FEL      + FRA    +R +Q+      W+  LE     + EN+FI +AEH+ CD E +++RR N
Sbjct:  137 CAGFLLKRSHSDPNLWRKRFCILAGDKLWYMRRRPPRSRGARMYASCIPLVTSRVNEPPKHLKLPYSFELQTVERPFYFRAFGRNARREQLVKVQRGWLMALERQINYSDENEFIKLAEHICCDSEKAKARRFN 270
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: A0A4D9CU19_9STRA (PH domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CU19_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 3.140e-11
Identity = 45/129 (34.88%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  189 SGFLEKRGSGNCDQWRRRWCVLAGERLWLTRDKNQT---GAARFIPLAGVSVRDSSKGLGMANVF--------ELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAVAEHMICDEESSRSRR 542
            SG+L KR S +   WRRRWCVL  ++ W  + K++    G A  I L G+ V D   G G +           E+     V+ FRA SR +Q  W+  +    + A+EN+++A+AE ++ +EE +R RR
Sbjct:  133 SGYLLKRSSRDPCLWRRRWCVLGEDKFWYMKAKHRRSMRGKAASIALMGMQVLDLECGEGESRELQRVAPLGVEVQTADRVFVFRALSREQQAEWVQAMRRGVRLATENEWLAMAELVVGEEEKARERR 261
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BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Match: A0A7S4DI75_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DI75_HETAK)

HSP 1 Score: 52.0 bits (123), Expect = 5.140e-5
Identity = 26/57 (45.61%), Postives = 36/57 (63.16%), Query Frame = 3 
Query:  372 FELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAVAEHMICDEESSRSRR 542
            FE+      Y FRA S+  +  W+  L      A END+IA+AEH+ICD+E++RSRR
Sbjct:   24 FEVQTVGQTYQFRATSQKDRQEWVRRLNEQVALAGENDYIALAEHIICDQEAARSRR 80
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig604.3.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LCW3_ECTSI6.140e-2645.39PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5KG66_9PHAE3.120e-2441.72PH domain-containing protein n=1 Tax=Ectocarpus sp... [more]
A0A835ZFB7_9STRA3.640e-1535.29PH domain-containing protein n=1 Tax=Tribonema min... [more]
A0A7S2HEY4_9STRA1.920e-1235.82Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CU19_9STRA3.140e-1134.88PH domain-containing protein n=2 Tax=Monodopsidace... [more]
A0A7S4DI75_HETAK5.140e-545.61Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig604contigP-wetherbeei_contig604:3371..4722 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LCW3
PFAMsPH,RGS
Model size943
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.26e-28
EggNOG OGs28P6I@1|root,2QVTE@2759|Eukaryota
DescriptionPleckstrin homology domain.
Cds size579
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.732058-UTR-P-wetherbeei_contig604:3370..34171683186884.732058-UTR-P-wetherbeei_contig604:3370..3417Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig604 3371..3417 +
1683186884.769089-UTR-P-wetherbeei_contig604:4405..47221683186884.769089-UTR-P-wetherbeei_contig604:4405..4722Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig604 4406..4722 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.7419825-CDS-P-wetherbeei_contig604:3417..37261683186884.7419825-CDS-P-wetherbeei_contig604:3417..3726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig604 3418..3726 +
1683186884.7525196-CDS-P-wetherbeei_contig604:3904..39791683186884.7525196-CDS-P-wetherbeei_contig604:3904..3979Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig604 3905..3979 +
1683186884.7610574-CDS-P-wetherbeei_contig604:4210..44051683186884.7610574-CDS-P-wetherbeei_contig604:4210..4405Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig604 4211..4405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig604.3.2prot_P-wetherbeei_contig604.3.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig604 3418..4405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig604.3.2

>prot_P-wetherbeei_contig604.3.2 ID=prot_P-wetherbeei_contig604.3.2|Name=mRNA_P-wetherbeei_contig604.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=193bp
MQESASSAALSETSVGGASLENDAWSTSEEEGGGDSYDLSNLGHGECSGF
LEKRGSGNCDQWRRRWCVLAGERLWLTRDKNQTGAARFIPLAGVSVRDSS
KGLGMANVFELHVGHHVYCFRAESRAKQVAWMAELEHAAQAASENDFIAV
AEHMICDEESSRSRRSNAAILAAAAARRAEARLKEDGEATAR*
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mRNA from alignment at P-wetherbeei_contig604:3371..4722+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig604.3.2 ID=mRNA_P-wetherbeei_contig604.3.2|Name=mRNA_P-wetherbeei_contig604.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1352bp|location=Sequence derived from alignment at P-wetherbeei_contig604:3371..4722+ (Phaeothamnion wetherbeei SAG_119_79)
AAGCGAGAAGGGGAAAGGACGAAAGAAGAGCCTCCTTCCTCAGCAGCATG
CAAGAAAGCGCTTCGTCAGCGGCGCTGTCAGAAACCTCGGTCGGCGGTGC
AAGCCTCGAGAACGACGCTTGGAGCACATCAGAAGAAGAGGGAGGCGGAG
ACTCATACGACCTCAGCAACCTGGGCCACGGGGAGTGCAGCGGGTTTCTA
GAGAAGCGGGGTTCGGGAAATTGCGATCAATGGCGAAGGCGATGGTGCGT
GCTTGCTGGAGAGCGCCTGTGGCTGACACGAGACAAGAACCAAACGGGAG
CCGCAAGGTTCATCCCGCTCGCCGGCGTTTCCGTGCGAGACAGTTCAAAG
GGCTTGGTGAGAGAGATTTGAAGCGTTTTGGGGAAGGCACTCTTCCAGAC
AGCCAAGGAGTGCGCTCAATGGTCGTGGAATCTCTCTCTTAACTGTCTGA
AAACATGAGAATACATAGTAGGCTGCTTGCTGTTCTTTCTCCCACTGCAA
TAACTCTCCCACACTTATTCCGCAACACTGCAAGGGTATGGCAAATGTAT
TCGAGCTGCACGTTGGACATCACGTCTACTGCTTTCGGGCCGAGAGCCGG
GCGAAGCAGGTGCGCATTGCTTCATTTGTTGTCGTAATGGCCGCGACATC
AGATTCGATTCGGCATGCCAAGTCTCGACATCTGACGCGTCAGGTTCTTC
TATGATGCCGCACTCCCTTCTGGGAATGCTTTGATTTAGTATGGTACCTC
AATGTATTTTCTGATGGCCATTTCACCTTATTCCTGGCCTCTTCCAACCC
TTTCCCCTCCTACATGCACACTCATTCTCGCTGTTTTCAGGTGGCGTGGA
TGGCGGAACTGGAGCACGCGGCGCAGGCGGCGTCAGAAAATGACTTTATT
GCGGTGGCGGAGCACATGATTTGCGATGAAGAGAGTTCCCGCTCCCGACG
GTCAAACGCAGCAATACTGGCTGCTGCGGCGGCGCGGAGGGCGGAGGCGC
GCTTAAAGGAGGATGGGGAGGCAACGGCGAGGTAAATTGGCTTCTTGGAT
ACGCGCGTTTGTGGGCTCTTTGTTGTGTCTGCCTAGGCACCGCCGGAGTT
GGACTGCGTTGTACAAATTGCTCGGCATGGCGGAAGACATTCAGGTTTGC
TTCCGGGAGCGCGACTTGTTACATAGAAAGGTGGGCGATTGGAACCGACC
CGGCGCGGACAGGCGGGGTCAGAGCGGCTCGCTGTAAAGGCAGCACGAGA
GGACGGCGGAAGAAAAGACGGCCAGGGAGCACTTTAGGAGACGAGGATGC
CGAAATGATTAGATCTGTCGTTTATATGTGGGTAAGATTCCGCCTTTGCC
AA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig604:3371..4722+

>mRNA_P-wetherbeei_contig604.3.2 ID=mRNA_P-wetherbeei_contig604.3.2|Name=mRNA_P-wetherbeei_contig604.3.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=579bp|location=Sequence derived from alignment at P-wetherbeei_contig604:3371..4722+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCAAGAAAGCGCTTCGTCAGCGGCGCTGTCAGAAACCTCGGTCGGCGG
TGCAAGCCTCGAGAACGACGCTTGGAGCACATCAGAAGAAGAGGGAGGCG
GAGACTCATACGACCTCAGCAACCTGGGCCACGGGGAGTGCAGCGGGTTT
CTAGAGAAGCGGGGTTCGGGAAATTGCGATCAATGGCGAAGGCGATGGTG
CGTGCTTGCTGGAGAGCGCCTGTGGCTGACACGAGACAAGAACCAAACGG
GAGCCGCAAGGTTCATCCCGCTCGCCGGCGTTTCCGTGCGAGACAGTTCA
AAGGGCTTGGGTATGGCAAATGTATTCGAGCTGCACGTTGGACATCACGT
CTACTGCTTTCGGGCCGAGAGCCGGGCGAAGCAGGTGGCGTGGATGGCGG
AACTGGAGCACGCGGCGCAGGCGGCGTCAGAAAATGACTTTATTGCGGTG
GCGGAGCACATGATTTGCGATGAAGAGAGTTCCCGCTCCCGACGGTCAAA
CGCAGCAATACTGGCTGCTGCGGCGGCGCGGAGGGCGGAGGCGCGCTTAA
AGGAGGATGGGGAGGCAACGGCGAGGTAA
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