mRNA_P-wetherbeei_contig6039.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6039.1.1
Unique NamemRNA_P-wetherbeei_contig6039.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6039.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6039contigP-wetherbeei_contig6039:485..1500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1016
Hectar predicted targeting categoryother localisation
Exons1
Cds size1002
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.5529027-CDS-P-wetherbeei_contig6039:484..14861683186884.5529027-CDS-P-wetherbeei_contig6039:484..1486Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6039 485..1486 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.5617135-UTR-P-wetherbeei_contig6039:1486..15001683186884.5617135-UTR-P-wetherbeei_contig6039:1486..1500Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6039 1487..1500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6039.1.1prot_P-wetherbeei_contig6039.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6039 485..1486 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6039.1.1

>prot_P-wetherbeei_contig6039.1.1 ID=prot_P-wetherbeei_contig6039.1.1|Name=mRNA_P-wetherbeei_contig6039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=334bp
MEVSTALSLLPPLPDSPISAKIREEHDEFFAPHENGSKEEATVVEPVVAP
EGAEARQDDTEIPIDMSGGVIEVAKNEDTFSPSVPQPESAVVESPRGETS
GEISAEGGPLVEDDGKEPKRNAAEELAWVRLRRISAESVIFKTIISSAAR
RRASKRKALEGRLAAAEQCIEETEGQLDKARQERDIARHGFDEICSEHEE
VRRSLEEDVSRRREESQRDIDEANRERAESCRERDEARRKREEALREVAE
LRRERDEARRERDEAVAAAAEAAAAAAATPPVAADPGEAEALLEEARAEA
AEQRAARTAADRDAARQRWAAEARAREVDHLKTE
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mRNA from alignment at P-wetherbeei_contig6039:485..1500-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6039.1.1 ID=mRNA_P-wetherbeei_contig6039.1.1|Name=mRNA_P-wetherbeei_contig6039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1016bp|location=Sequence derived from alignment at P-wetherbeei_contig6039:485..1500- (Phaeothamnion wetherbeei SAG_119_79)
TAGAAGCTAACAATATGGAAGTCTCAACCGCGCTTTCTCTGCTTCCTCCC
TTGCCAGACTCACCGATCTCGGCTAAGATAAGAGAGGAGCACGACGAATT
TTTCGCGCCTCATGAGAATGGATCCAAGGAGGAAGCGACCGTAGTAGAGC
CAGTCGTGGCGCCCGAGGGAGCGGAGGCGCGCCAAGATGACACGGAGATC
CCAATCGACATGTCAGGCGGCGTCATCGAGGTCGCTAAAAACGAGGACAC
ATTTTCCCCGTCAGTCCCTCAACCCGAAAGCGCCGTGGTCGAGTCGCCGC
GAGGCGAGACAAGCGGCGAGATCTCTGCTGAAGGCGGTCCTCTGGTCGAG
GACGATGGCAAAGAGCCCAAAAGGAACGCGGCAGAGGAGCTCGCCTGGGT
GCGACTGCGGCGCATCTCTGCGGAAAGCGTCATATTCAAGACCATTATTT
CGTCGGCGGCACGCAGGCGGGCGAGCAAACGAAAGGCCCTCGAAGGGCGC
CTCGCGGCCGCCGAGCAGTGCATTGAAGAGACGGAGGGACAGCTGGACAA
GGCGCGCCAAGAACGGGACATCGCGCGCCACGGCTTCGACGAGATCTGCA
GCGAGCACGAGGAGGTGCGCCGCAGCCTGGAGGAGGACGTCAGCCGCCGA
CGGGAGGAGTCGCAGCGCGACATCGACGAGGCAAATCGCGAGCGTGCCGA
GTCTTGCCGCGAGCGTGACGAAGCGCGCCGCAAACGCGAGGAAGCCCTCC
GCGAGGTAGCGGAGCTTCGCCGCGAGCGCGATGAGGCGCGCCGCGAGCGA
GACGAGGCCGTGGCGGCAGCGGCTGAGGCGGCAGCAGCGGCGGCGGCGAC
ACCGCCTGTCGCAGCTGACCCCGGCGAGGCAGAGGCTCTCCTGGAGGAGG
CGCGCGCAGAGGCGGCGGAGCAGCGCGCGGCCCGCACCGCCGCGGACCGC
GACGCGGCGCGGCAGCGCTGGGCGGCGGAGGCGCGCGCACGCGAGGTTGA
TCACCTGAAGACGGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6039:485..1500-

>mRNA_P-wetherbeei_contig6039.1.1 ID=mRNA_P-wetherbeei_contig6039.1.1|Name=mRNA_P-wetherbeei_contig6039.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1002bp|location=Sequence derived from alignment at P-wetherbeei_contig6039:485..1500- (Phaeothamnion wetherbeei SAG_119_79)
ATGGAAGTCTCAACCGCGCTTTCTCTGCTTCCTCCCTTGCCAGACTCACC
GATCTCGGCTAAGATAAGAGAGGAGCACGACGAATTTTTCGCGCCTCATG
AGAATGGATCCAAGGAGGAAGCGACCGTAGTAGAGCCAGTCGTGGCGCCC
GAGGGAGCGGAGGCGCGCCAAGATGACACGGAGATCCCAATCGACATGTC
AGGCGGCGTCATCGAGGTCGCTAAAAACGAGGACACATTTTCCCCGTCAG
TCCCTCAACCCGAAAGCGCCGTGGTCGAGTCGCCGCGAGGCGAGACAAGC
GGCGAGATCTCTGCTGAAGGCGGTCCTCTGGTCGAGGACGATGGCAAAGA
GCCCAAAAGGAACGCGGCAGAGGAGCTCGCCTGGGTGCGACTGCGGCGCA
TCTCTGCGGAAAGCGTCATATTCAAGACCATTATTTCGTCGGCGGCACGC
AGGCGGGCGAGCAAACGAAAGGCCCTCGAAGGGCGCCTCGCGGCCGCCGA
GCAGTGCATTGAAGAGACGGAGGGACAGCTGGACAAGGCGCGCCAAGAAC
GGGACATCGCGCGCCACGGCTTCGACGAGATCTGCAGCGAGCACGAGGAG
GTGCGCCGCAGCCTGGAGGAGGACGTCAGCCGCCGACGGGAGGAGTCGCA
GCGCGACATCGACGAGGCAAATCGCGAGCGTGCCGAGTCTTGCCGCGAGC
GTGACGAAGCGCGCCGCAAACGCGAGGAAGCCCTCCGCGAGGTAGCGGAG
CTTCGCCGCGAGCGCGATGAGGCGCGCCGCGAGCGAGACGAGGCCGTGGC
GGCAGCGGCTGAGGCGGCAGCAGCGGCGGCGGCGACACCGCCTGTCGCAG
CTGACCCCGGCGAGGCAGAGGCTCTCCTGGAGGAGGCGCGCGCAGAGGCG
GCGGAGCAGCGCGCGGCCCGCACCGCCGCGGACCGCGACGCGGCGCGGCA
GCGCTGGGCGGCGGAGGCGCGCGCACGCGAGGTTGATCACCTGAAGACGG
AG
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