mRNA_P-wetherbeei_contig6033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6033.1.1
Unique NamemRNA_P-wetherbeei_contig6033.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A835ZCD8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCD8_9STRA)

HSP 1 Score: 234 bits (596), Expect = 1.040e-70
Identity = 115/155 (74.19%), Postives = 125/155 (80.65%), Query Frame = 1
Query:   58 EHSSHKFQDFIGNFLAQVPFEAVDVWVPLSRQGDSSGVVLFHAGYFTNVPELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTVQLTGALREFIERTVTQWKFDATFD 522
            E  +  FQDF+G+FL QVPFEAVDVWVPL+RQ     VVLFHAGYFTN  ELEEWG+YSTNFSF  GEGLPGRV+ SNTSEWQ DV    +NMFLRLNGA++ GIRTTFGVPVVSRRGVTFVIVFYSR TV +  ALR FIERTV  WKFDA  D
Sbjct:  472 EGGNELFQDFVGSFLQQVPFEAVDVWVPLARQETGGRVVLFHAGYFTN--ELEEWGEYSTNFSFEKGEGLPGRVFGSNTSEWQEDVHLLGHNMFLRLNGAIKTGIRTTFGVPVVSRRGVTFVIVFYSRKTVHVNPALRAFIERTVRSWKFDANVD 624          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: D8LER0_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER0_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 5.150e-68
Identity = 110/156 (70.51%), Postives = 128/156 (82.05%), Query Frame = 1
Query:   64 SSHKFQDFIGNFLAQVPFEAVDVWVPLSRQG-DSSGVVLFHAGYFTNVPELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTVQLTGALREFIERTVTQWKFDATFDSE 528
            SSH+F+DFIGNFL Q+PFEAVDVWVPL  Q  + S VVLFHAGYFTNV ELEEWGDYSTNFSF  G+GLPGRVY +N SEWQ +V   ++  FLRLNGA+ +GIRT+FGVPVVSR GVTFVIVFYSR  VQ+   ++ FIERTV+ WKFDAT D++
Sbjct:  618 SSHRFEDFIGNFLDQIPFEAVDVWVPLCNQDQEGSEVVLFHAGYFTNVKELEEWGDYSTNFSFRQGQGLPGRVYANNKSEWQENVVNLNHAHFLRLNGAMNIGIRTSFGVPVVSRWGVTFVIVFYSRVAVQMDADMKAFIERTVSAWKFDATVDTD 773          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A6H5JBQ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBQ8_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.440e-60
Identity = 98/156 (62.82%), Postives = 117/156 (75.00%), Query Frame = 1
Query:   61 HSSHKFQDFIGNFLAQVPFEAVDVWVPL-SRQGDSSGVVLFHAGYFTNVPELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTVQLTGALREFIERTVTQWKFDATFDS 525
            +  H F+ FI NFL QVPFEAVDVWVPL  R  + S VVLFHAGYFTNV EL+EWGDYSTNFSF  G+G+PGRV+ SN SE+  +V   D +MFLRLNGA ++GI T+F +PVVSR GVTFVIVFY+R T+QL    + FIE  V  W+ DAT D+
Sbjct:  130 NDDHPFEQFIANFLDQVPFEAVDVWVPLCDRDQEGSEVVLFHAGYFTNVKELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQLDAEKKVFIENMVRGWELDATVDT 285          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: D8LLI8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLI8_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 9.280e-54
Identity = 92/145 (63.45%), Postives = 110/145 (75.86%), Query Frame = 1
Query:   61 HSSHKFQDFIGNFLAQVPFEAVDVWVPL-SRQGDSSGVVLFHAGYFTNVPELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTVQLTGALREFIERTV 492
            +  H F+ FI NFL QVPFEAVDVWVPL  R  + S VVLFHAGYFTNV EL+EWGDYSTNFSF  G+G+PGRV+ SN SE+  +V   D +MFLRLNGA ++GI T+F +PVVSR GVTFVIVFY+R T+Q  G  RE   ++V
Sbjct:  176 NDDHPFEHFIANFLDQVPFEAVDVWVPLCDRDQEGSDVVLFHAGYFTNVKELDEWGDYSTNFSFRQGQGIPGRVFGSNQSEFHENVVNLDLSMFLRLNGARKIGIGTSFALPVVSRWGVTFVIVFYTRATIQ--GEKRESAFKSV 318          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A1Z5KJS1_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KJS1_FISSO)

HSP 1 Score: 103 bits (258), Expect = 1.390e-22
Identity = 58/153 (37.91%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   76 FQDFIGNFLAQ--VPFEAVDVWVPLSRQGDSSG--VVLFHAGYFTNVP-------ELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTVQLTGALREFIERTVTQW 501
            F + + +F+ Q  +PFE VD+WVP   +GD  G  + L+HAG  T           + E+G+YST FSF +G GLPGRVY ++   W+  + + D  +F R  GA   G++T FGVPVVS+     V+VFYS   +Q    + E I  +++++
Sbjct:  402 FVEELVSFIEQENLPFEHVDLWVPSFAEGDGPGNEMRLYHAGQGTRGDLDASLYYRMCEYGEYSTKFSFAVGHGLPGRVYCTDKPSWERHIHEQDPKIFERAGGAKMYGVKTGFGVPVVSKSIGRIVVVFYSVHDIQPDLQMMERIVASLSKY 554          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A1Z5KSW9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KSW9_FISSO)

HSP 1 Score: 97.1 bits (240), Expect = 3.600e-20
Identity = 52/132 (39.39%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   76 FQDFIGNFLAQ--VPFEAVDVWVPLSRQGDSSG--VVLFHAGYFTNVP-------ELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYS 438
            F + + +F+ Q  +PFE VD+WVP   +G+  G  + L+H G  T           + E+G+YST FSF +G GLPGRVY ++   W+  + + D  +F R  GA   G++T FGVPV+S+     V+VFYS
Sbjct:  402 FVEELLSFIEQENLPFEHVDLWVPSFAEGNGPGNEMRLYHGGQGTRGDLDASLYYRMCEYGEYSTRFSFAVGHGLPGRVYSTDMPSWERHIHEQDPKIFERAGGARMYGVKTGFGVPVLSKSIGRIVVVFYS 533          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A7S1Y4Q5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y4Q5_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 1.080e-16
Identity = 59/169 (34.91%), Postives = 76/169 (44.97%), Query Frame = 1
Query:  109 VPFEAVDVWVP---------LSRQGDSSGVVLFHAGYFT-----------NVP-------ELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDT----VQLTGALREFIERTVTQWKFDATFD 522
            VPFE VD+WVP          +    S+   L +AG  T           NVP        L  +GDYS  FSF++G GLPGRVY +    W+  VQ   +  F R  GALQ GI+T  G+P+ S      V+  YSR       +L G L E   R +   K+    D
Sbjct:  365 VPFEHVDLWVPSFVPTTGEAAAAPDGSTSCRLCYAGSATADFQAGPDGKVNVPLDHEALFNLHAFGDYSQKFSFDVGCGLPGRVYQTGLPTWEQSVQNAPHEHFERCGGALQWGIKTVVGIPIASPNVGRIVVTLYSRSDREKDQELVGRLSEEFTRLMPSPKWKLVVD 533          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A1Z5KQF7_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KQF7_FISSO)

HSP 1 Score: 86.7 bits (213), Expect = 1.470e-16
Identity = 56/151 (37.09%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   70 HKFQDFIGNFL-----AQVPFEAVDVWVP--LSRQGDSS------------GVVLFHA--GYFTNVP-------ELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYS 438
            H    FIG  +       +PFE VD+WVP  +S+  D              G   +H   G  + VP       +L  +G+YS  FSF++G GLPGRVY +  S W+  +Q   +  F R  GA+Q GI+T  GVPV S      VIVFYS
Sbjct:  330 HFSSPFIGKVVDYMQRTNIPFEHVDIWVPSFVSQTPDDESGGKCRLCFAGCGTADYHVPPGESSPVPLSGESQFDLISFGEYSQKFSFDVGCGLPGRVYLTGVSSWEQGIQSAPSGQFERKGGAVQWGIQTVLGVPVPSPNVGRVVIVFYS 480          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A7S1Z627_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z627_TRICV)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-16
Identity = 59/159 (37.11%), Postives = 80/159 (50.31%), Query Frame = 1
Query:   58 EHSSHKFQDFIGNFLAQ--VPFEAVDVWVPL-------SRQGDS-SGVVLFHAGYFT-----------NVP---------ELEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRD 444
            +H+S  F   + N+L +  VPFE VD WVP        S  G+S S   L  AG+ T           N P         +L  +G+YS  FSFN+G GLPGRVY S    W+  VQ   ++ F R  GALQ G++T  G+P+ S      V+V YS++
Sbjct:   38 QHAS-PFLSKVINYLQRHGVPFEHVDAWVPSFVPNENSSANGNSDSKCRLCFAGFATADVFLTADVEGNAPKLISRADQYDLISFGEYSQKFSFNVGCGLPGRVYQSGVPTWEQSVQNAPHHHFERCGGALQWGVKTVVGLPIPSPNVGRIVLVLYSKE 195          
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Match: A0A7S4HQ09_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HQ09_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.700e-16
Identity = 59/167 (35.33%), Postives = 77/167 (46.11%), Query Frame = 1
Query:  109 VPFEAVDVWVP--------------------LSRQGDSSGVVLFHAGYFTNVPE---------LEEWGDYSTNFSFNLGEGLPGRVYYSNTSEWQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDT----VQLTGALREFIERTVT--QWK 504
            VPFE VD WVP                    L   G ++G  L  +G   N  +         L  +G+YS  FSFN+G GLPGRVY S    W+  VQ   ++ F R  GALQ GI+T  G+P+ S      V+V YSR+      QL G L E   + +   +WK
Sbjct:  356 VPFEHVDAWVPSFVPGEGGTVGGNNADSKCRLCFAGFATGDYLVRSGLNGNSSQSLAMEDQFSLVAFGEYSQKFSFNVGCGLPGRVYQSGVPTWEQSVQNAPHHHFERCGGALQWGIKTVVGLPIPSPNVGRIVLVLYSREDREKDQQLVGKLCEEFSKFMPTPKWK 522          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZCD8_9STRA1.040e-7074.19Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LER0_ECTSI5.150e-6870.51RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JBQ8_9PHAE1.440e-6062.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLI8_ECTSI9.280e-5463.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1Z5KJS1_FISSO1.390e-2237.91Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A1Z5KSW9_FISSO3.600e-2039.39Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S1Y4Q5_9STRA1.080e-1634.91Hypothetical protein (Fragment) n=1 Tax=Grammatoph... [more]
A0A1Z5KQF7_FISSO1.470e-1637.09Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1Z627_TRICV1.880e-1637.11Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S4HQ09_9STRA3.700e-1635.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6033contigP-wetherbeei_contig6033:2081..3094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LER0
Model size531
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue8.44e-69
EggNOG OGs28HE3@1|root,2RTIT@2759|Eukaryota
DescriptionRing finger
Cds size531
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186884.344586-CDS-P-wetherbeei_contig6033:2080..23561683186884.344586-CDS-P-wetherbeei_contig6033:2080..2356Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6033 2081..2356 -
1683186884.3538578-CDS-P-wetherbeei_contig6033:2839..30941683186884.3538578-CDS-P-wetherbeei_contig6033:2839..3094Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6033 2840..3094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6033.1.1prot_P-wetherbeei_contig6033.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6033 2081..3094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6033.1.1

>prot_P-wetherbeei_contig6033.1.1 ID=prot_P-wetherbeei_contig6033.1.1|Name=mRNA_P-wetherbeei_contig6033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=177bp
GVAAGGGDGSSSSTADEDEEHSSHKFQDFIGNFLAQVPFEAVDVWVPLSR
QGDSSGVVLFHAGYFTNVPELEEWGDYSTNFSFNLGEGLPGRVYYSNTSE
WQPDVQQTDNNMFLRLNGALQLGIRTTFGVPVVSRRGVTFVIVFYSRDTV
QLTGALREFIERTVTQWKFDATFDSE*
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mRNA from alignment at P-wetherbeei_contig6033:2081..3094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6033.1.1 ID=mRNA_P-wetherbeei_contig6033.1.1|Name=mRNA_P-wetherbeei_contig6033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1014bp|location=Sequence derived from alignment at P-wetherbeei_contig6033:2081..3094- (Phaeothamnion wetherbeei SAG_119_79)
GGAGTTGCTGCCGGCGGCGGCGACGGCAGTTCTTCTTCGACGGCGGACGA GGACGAGGAGCACAGCAGCCACAAGTTCCAGGACTTTATCGGAAATTTCC TGGCGCAGGTGCCATTCGAGGCCGTCGACGTGTGGGTTCCGCTGTCACGC CAGGGAGACAGCTCGGGCGTGGTGCTCTTCCACGCCGGCTACTTCACCAA CGTACCGGAACTGGAGGAGTGGGGCGACTACTCGACCAACTTCTCGTTCA ATCTGGTGCGTTCGGTTTGTCCTCGTCTACTTCTGTTTCTTCTTATTTGC AACTGGAACAAGTTTCTTCTGATCCGAAACGGAAGCTGGGAAGGCTTCCA CTTGTGGTTCTTTGTTCTGAAACAGATTTTCTTGCTTTGAAAAACAAAGT TGTGCGAAATCCTCGTCTGTCCCTACTTGCGTTGATTTACTGGCTTAACT GTCGCTGCGCGTCTGCTCGCACCTGTTTACCACGCTGAGCGCGATCTTTG TCTGCTTATGCCGCCGTGCAAAGGCACTTACAATTGTTCCGCCTGCAAAT ATGGCCGCTGAGGCTTGCTCACTTTTTTGCGTCTTTCAACGGTGCGAGGA TTTAACCTGCAGTCAACCGGTTCCTCTGGCCCTTCATTTACGGCCCTTCA CTTGCGGCCCGGCCCTTCATTTACTCTCGTGGCTTTCTTCCGGTCCCATT GTGGTCCCGTTGTCGTTCCACTTCGGTTCCCGTTGCAGGGTGAGGGGCTC CCGGGGCGGGTCTACTACTCCAATACTTCCGAGTGGCAGCCGGATGTCCA GCAGACGGACAACAACATGTTCCTGCGGCTGAACGGCGCCCTCCAGCTCG GCATCCGCACCACATTTGGCGTGCCGGTCGTGTCGCGCCGCGGTGTCACG TTCGTCATCGTCTTCTACTCGCGCGACACGGTGCAGCTGACGGGCGCGCT GCGCGAGTTCATCGAGCGCACGGTCACGCAGTGGAAGTTCGACGCCACCT TCGACTCGGAGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6033:2081..3094-

>mRNA_P-wetherbeei_contig6033.1.1 ID=mRNA_P-wetherbeei_contig6033.1.1|Name=mRNA_P-wetherbeei_contig6033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=531bp|location=Sequence derived from alignment at P-wetherbeei_contig6033:2081..3094- (Phaeothamnion wetherbeei SAG_119_79)
GGAGTTGCTGCCGGCGGCGGCGACGGCAGTTCTTCTTCGACGGCGGACGA
GGACGAGGAGCACAGCAGCCACAAGTTCCAGGACTTTATCGGAAATTTCC
TGGCGCAGGTGCCATTCGAGGCCGTCGACGTGTGGGTTCCGCTGTCACGC
CAGGGAGACAGCTCGGGCGTGGTGCTCTTCCACGCCGGCTACTTCACCAA
CGTACCGGAACTGGAGGAGTGGGGCGACTACTCGACCAACTTCTCGTTCA
ATCTGGGTGAGGGGCTCCCGGGGCGGGTCTACTACTCCAATACTTCCGAG
TGGCAGCCGGATGTCCAGCAGACGGACAACAACATGTTCCTGCGGCTGAA
CGGCGCCCTCCAGCTCGGCATCCGCACCACATTTGGCGTGCCGGTCGTGT
CGCGCCGCGGTGTCACGTTCGTCATCGTCTTCTACTCGCGCGACACGGTG
CAGCTGACGGGCGCGCTGCGCGAGTTCATCGAGCGCACGGTCACGCAGTG
GAAGTTCGACGCCACCTTCGACTCGGAGTGA
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