mRNA_P-wetherbeei_contig603.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig603.3.1
Unique NamemRNA_P-wetherbeei_contig603.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig603.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig603contigP-wetherbeei_contig603:5223..5470 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size230
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.944733-UTR-P-wetherbeei_contig603:5222..52511683186883.944733-UTR-P-wetherbeei_contig603:5222..5251Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig603 5223..5251 -
1683186883.9683638-UTR-P-wetherbeei_contig603:5410..54701683186883.9683638-UTR-P-wetherbeei_contig603:5410..5470Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig603 5411..5470 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.952918-CDS-P-wetherbeei_contig603:5251..53791683186883.952918-CDS-P-wetherbeei_contig603:5251..5379Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 5252..5379 -
1683186883.9605978-CDS-P-wetherbeei_contig603:5397..54101683186883.9605978-CDS-P-wetherbeei_contig603:5397..5410Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig603 5398..5410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig603.3.1prot_P-wetherbeei_contig603.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig603 5252..5410 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig603.3.1

>prot_P-wetherbeei_contig603.3.1 ID=prot_P-wetherbeei_contig603.3.1|Name=mRNA_P-wetherbeei_contig603.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=47bp
MTAQRNTTTKERATCSPSRTSNTKRGNKAGATLTCKLMPKPHLCPE*
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mRNA from alignment at P-wetherbeei_contig603:5223..5470-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig603.3.1 ID=mRNA_P-wetherbeei_contig603.3.1|Name=mRNA_P-wetherbeei_contig603.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=248bp|location=Sequence derived from alignment at P-wetherbeei_contig603:5223..5470- (Phaeothamnion wetherbeei SAG_119_79)
GAGCAAATAACGGCGACAGGTCGTCAAGAGGCGGCAGCTTGCAGCCAAAG
CTGAGGACATATGACAGCACAGAGTAAGATACAACGAACAGGAAACACCA
CGACGAAGGAGAGAGCAACGTGTTCCCCATCTAGGACATCAAACACAAAA
CGGGGTAATAAGGCGGGCGCCACTCTTACCTGCAAGTTGATGCCGAAGCC
GCACTTGTGCCCCGAATAATAGCGCTTGACGTTCAACGTATCCAATTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig603:5223..5470-

>mRNA_P-wetherbeei_contig603.3.1 ID=mRNA_P-wetherbeei_contig603.3.1|Name=mRNA_P-wetherbeei_contig603.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=141bp|location=Sequence derived from alignment at P-wetherbeei_contig603:5223..5470- (Phaeothamnion wetherbeei SAG_119_79)
ATGACAGCACAGAGAAACACCACGACGAAGGAGAGAGCAACGTGTTCCCC
ATCTAGGACATCAAACACAAAACGGGGTAATAAGGCGGGCGCCACTCTTA
CCTGCAAGTTGATGCCGAAGCCGCACTTGTGCCCCGAATAA
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