prot_P-wetherbeei_contig6027.1.2 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig6027.1.2
Unique Nameprot_P-wetherbeei_contig6027.1.2
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length586
Homology
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 945 bits (2442), Expect = 0.000e+0
Identity = 453/592 (76.52%), Postives = 518/592 (87.50%), Query Frame = 0
Query:    1 PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAEPEQQQST------EKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            P  E I QEDAW+VI++YFAEKGLVRQQLDSFDEF+NNTMQE+V+E+GDI V PEPQY+PGME  ++TF+I F QVYLSKPIV+EKDGSVTNM+PHEARLRN+TYSAPLYCDIDC +Y +++  A  + + S       + EFLGYVPIMLRCSFCVLA+++D+ELTELGECIYDQGGYF+ING +KVLIAQERMSNNHVYCF+KKQPSKF WVCE RSH +   RPTSTM+LQMY KGPK S+I+GGQIR TLPYVR DVP+VLIFRALGFVNDKTILEHI YDF D E+MEKFRPSLEEA+ +Q++ LALDFIGKRGSA++VGRNER+QYAK LLQKEVLPHV T    ET+KGFFLGYVVHKLLMC+LGRLEEDDRDHYGKKRLDLAGPLVAGLFRT             QKCLDEG+ FV+GVAI+S T+TNGL+YS+ATGNWGD+K+AT+AGVSQVL+RLT+ASALSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVGCAL+PI+EFLEEWA E+LEEISPS IA  +CTKIF+NGNW+G+HREPN L+ TL  QRR + + A
Sbjct:   11 PHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDEFINNTMQEIVTESGDIRVTPEPQYLPGMEVTKKTFQIKFNQVYLSKPIVIEKDGSVTNMFPHEARLRNLTYSAPLYCDIDCKIYDADNPAAPIDDKASILLAAYWKYEFLGYVPIMLRCSFCVLADRSDRELTELGECIYDQGGYFIINGRQKVLIAQERMSNNHVYCFRKKQPSKFHWVCETRSHVEGGTRPTSTMYLQMYVKGPKHSQIAGGQIRTTLPYVRTDVPIVLIFRALGFVNDKTILEHIVYDFSDAEMMEKFRPSLEEADVIQSRTLALDFIGKRGSAANVGRNERIQYAKGLLQKEVLPHVGTDEASETKKGFFLGYVVHKLLMCSLGRLEEDDRDHYGKKRLDLAGPLVAGLFRTXXXXXXXXXXXXXQKCLDEGRGFVLGVAIKSNTITNGLRYSLATGNWGDQKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGCALSPILEFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDA 602          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 893 bits (2307), Expect = 9.360e-313
Identity = 429/592 (72.47%), Postives = 505/592 (85.30%), Query Frame = 0
Query:    1 PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRS-------EDTTA-EPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 584
            P  E+I+QEDAW VI+AYF+EKGLVRQQLDSFDEFL +TM E+VS  G+I + PE QY+PG + VRRTF+I+FGQVYL+KP   EKDGS+T+M+PHEARLRN+TY++PLYCDI C  Y +       ED    E E+++   KEFLG+VPIMLR SFCVL N+TDKELTELGECIYDQGGYFVINGSEKVLIA ERMS NHVYCFKK+QPSKF W  E+RS  D S RP S+MFLQMYAKG + S+++GG IRA LPY+R DVPVVL+FRALG+ NDK ILEHI YDF DT++MEKFRPSLEEA+ +Q Q++A DFIGKRGSA +VGRNER+ YAK LLQ+E LPHV      E +K FFLGY+VHKLLMC+LGRLEEDDRDHYGKKRLDLAG L+AGLFR LFRKLT+++RKYLQ CLD+G QFV+G AI+SQ +T+GLKYS+ATGNWGDKK+AT+AGVSQVL+RLT+ASALSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVGC+L+PI+EFLEEWAME+L+EI+P  IA   CTK+F+NGNW+GVHR+PN L++TL  QRR + +
Sbjct:   98 PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDI 689          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 822 bits (2124), Expect = 1.050e-289
Identity = 395/588 (67.18%), Postives = 484/588 (82.31%), Query Frame = 0
Query:    5 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  Y++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R  RPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:   16 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGTVPIEEQDPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 601          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 822 bits (2124), Expect = 1.930e-286
Identity = 395/588 (67.18%), Postives = 485/588 (82.48%), Query Frame = 0
Query:    5 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  +++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R ARPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:    8 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKSNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 593          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: K3XBN8_GLOUD (DNA-directed RNA polymerase subunit beta n=28 Tax=Oomycota TaxID=4762 RepID=K3XBN8_GLOUD)

HSP 1 Score: 816 bits (2108), Expect = 9.020e-284
Identity = 393/592 (66.39%), Postives = 476/592 (80.41%), Query Frame = 0
Query:    3 GENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT--FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT------TAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            G +++QEDAW VI++YF EKGLVRQQLDSFDEF+ NTMQE+V ++  I + PE QY PG         + ISFGQ+YLSKP + E DGS + M+PHEARLRN+TY+APLY D+ C  Y++  +         P  Q  T KEF+G VPIMLR  +CVL +KTDKELTEL EC+YDQGGYF+INGSEKVLIAQERMSNNHVYCF+K   SK+ WVCE RSH +   RPTSTM++QMY +    S I+G QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGR+ EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ +LQKC+D GK F + +AIRS+T+TNGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQA+PRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEWA E+LEEI P  I  P  TKIF+NGNW+GVHREPN LI TL+  RR V + A
Sbjct:   24 GASVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQNKANTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYAAPLYVDVVCEKYQAPASGPADLDQIAPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKTGASKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDA 613          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: F0WJN8_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Oomycota TaxID=4762 RepID=F0WJN8_9STRA)

HSP 1 Score: 817 bits (2111), Expect = 9.290e-284
Identity = 395/592 (66.72%), Postives = 476/592 (80.41%), Query Frame = 0
Query:    3 GENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT--FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT------TAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            G +++QEDAW VI++YF EKGLVRQQLDSFDEF+ NTMQE+V ++  I + PE QY PG         + I FGQ+YLSKP + E DGS + M+PHEARLRN+TYSAPLY D+ C  +++  T        EP  Q  T KEF+G VPIMLR  +CVL +KTDKELTEL EC+YDQGGYF+INGSEKVLIAQERMSNNHVYCF+K   SK+ WVCE RSH +   RPTSTM++QMY +    S ISG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +VG+ +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGR+ EDDRDHYG KRLDLAGPL+  LFR LF+KLTKD++ YLQKC+D GK F + +AIRS+T+TNGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQA+PRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEWA E+LEEI P  I  P  TKIF+NGNW+GVHREPN L+ TL+  RR V + A
Sbjct:   52 GSSVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKAATDTIYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELVRTLRSLRRCVDIDA 641          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A418E4H4_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E4H4_9STRA)

HSP 1 Score: 809 bits (2090), Expect = 5.980e-281
Identity = 395/611 (64.65%), Postives = 484/611 (79.21%), Query Frame = 0
Query:    5 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQ-----------------------YAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  Y++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R  RPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++                       YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:   16 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGTVPIEEQDPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRCVVCPFSKIYIFKYFKKIFFFPRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 624          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 809 bits (2090), Expect = 1.840e-280
Identity = 397/643 (61.74%), Postives = 484/643 (75.27%), Query Frame = 0
Query:    5 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT-FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT---------------------------------TAEPEQQQS-----------------------------TEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 584
            +I QEDAW VI+AYFAEKGLVRQQLDSFDEF+ NTMQE+V ++G+++V PE QY+PG + + R  F + F QVY+SKP   E+DG+ +NM+PHEARLRNMTYS+P+Y DI C    S  T                                 TA P Q                                + KEFLGYVPIMLR  FCVLA+K+D+EL ELGEC+YDQGGYF+INGSEKV++AQERMSNNHVYCF+KKQP K+ WV E RSH +  ARPTST+++QMY K  +     G QIR TLPYVR D+PV+++FRALGFV D+ ILEH+ YDF DT++ME+ RPSL+EA  VQ Q +ALDFIG+RGSA+++GR++RVQYAKELLQKEVLPHV T    +T+K FF+GY+VHKLLMC+L R++EDDRDHYGKKRLDLAGPL+ GLFR LFRKLTKD+  YLQKC+DE + F +  AI+S+ +T+GL+YS+ATGNWGD+K A+RAGVSQVL+RLT+AS LSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALMAY+SVG   +PI+EFLEEW+ME+LEEISP  IA P  TKIF+NG+W+GVHR+P TL  TL+  RR + +
Sbjct:    2 DITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELHVEPEAQYLPGQKSLHRNKFTVVFNQVYVSKPTATERDGTTSNMFPHEARLRNMTYSSPIYVDISCIEPESTATLHQGCQAELYIENDWYPCVVDELKSGRANVTYETAGPLQDSDKVVIVKESDVEVSSRIRLPSGLAKAHRTDSPKEFLGYVPIMLRSRFCVLADKSDRELCELGECVYDQGGYFIINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTVYMQMYNKAGRGQS-QGNQIRMTLPYVRVDIPVIIVFRALGFVADRDILEHVVYDFSDTDMMERLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWIGVHRDPCTLEATLRSLRRQIDI 643          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 807 bits (2085), Expect = 7.480e-280
Identity = 395/643 (61.43%), Postives = 483/643 (75.12%), Query Frame = 0
Query:    6 IAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPG-MEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCT--------------------------------------------VYRSEDTTAEPEQQQ-------------------STEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 584
            I QEDAW VI+AYFAEKGLVRQQLDSFDEF+ NTMQE+V ++G++ V+PE QY PG +     T+ + F QVY+SKP   EKDG+ +NM+PHEARLRNMTY++P+Y DI C                                             ++  +D     E+                      + KEFLGYVPIMLR  FCVLA+K+DKEL ELGECIYDQGGYFVINGSEKV++AQERMSNNHVYCF+KKQP K+ WV E RSH +  ARPTST+++QMY K  +     G QIR TLPYVR DVPV+++FRALGFV D+ ILEH+ YDF DTE+ME+ RPSL+EA  +Q Q +ALDFIG+RGSA+++GR++RVQYAKELLQKEVLPHV T    +T+K FF+GY+VHKLLMC+L R++EDDRDHYGKKRLDLAGPL+ GLFR LFRKLTKD+  YLQKC+D+G+ F +  AI+S+ +T+GL+YS+ATGNWGD+K A+RAGVSQVL+RLT+AS LSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALM+Y+SVG   +PI+EFLEEW+ME+LEEISP  IA P  TKIF+NG+W+GVHR+P+TL  TL+  RR + +
Sbjct:    3 ITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLAATPSTYFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDISCVEQKQASPLRQGCAAELEIHGDWYPCVITKLSDGYATVTYEVVGPIHSGDDQIQVVEEHHVDVSARVRLINGGSSTHRIDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQS-QGNQIRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEAFVIQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDI 644          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 802 bits (2071), Expect = 3.130e-278
Identity = 388/601 (64.56%), Postives = 475/601 (79.03%), Query Frame = 0
Query:    6 IAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPV----------RRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYR----------SEDTTAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 586
            + QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE+V ++G I V PE Q++ G +            ++ F + FGQVYLSKP  VEKDG+VTNM+PHEARLRN+TY+APLY D+    YR          +ED   EP   +   KEFLGYVPIMLR  FCVL++K D +L +LGECIYDQGGYFVINGSEKV++AQERMSNNHVY FKKKQPSKF WV E RS  + S RPTST+++QMY KG K + I G QIR+TLPY+R D+PVV+IFRALG+V D+ I+EH+ YD  D E+M+ FRPSLEEA  +Q Q +ALDFIG+RGSA  V +++R++YA  +LQKEVLPHV T  HCET+KGFFLGY VHKLLMC LGR +EDDRDH+GKKRLDLAGPL+ GLFR LFRKLTKD+RK+LQ+CLDEGK F +G AI+S  +++GLKYS+ATGNWGDK + ++AGVSQVL+RLT+AS+LSHLRR NTPL R GKQAKPRQLHN+HWGMVCPAETPEGQAVGLVKN+ALMAYI+ G +  P++EFLEE++ E+L +I PS IA P   KIF+NGNW+G+HR+P  L+ T +  RR++ + A
Sbjct:    8 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDM-GEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMIDIDA 606          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ41_9STRA0.000e+076.52DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
D7FHZ3_ECTSI9.360e-31372.47DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A425D5T0_9STRA1.050e-28967.18DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A024TRP0_9STRA1.930e-28667.18DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
K3XBN8_GLOUD9.020e-28466.39DNA-directed RNA polymerase subunit beta n=28 Tax=... [more]
F0WJN8_9STRA9.290e-28466.72DNA-directed RNA polymerase subunit beta n=4 Tax=O... [more]
A0A418E4H4_9STRA5.980e-28164.65DNA-directed RNA polymerase subunit beta n=4 Tax=A... [more]
A0A8J2SZW4_9STRA1.840e-28061.74DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
F0YGN2_AURAN7.480e-28061.43DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
B8C598_THAPS3.130e-27864.56DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR037034RNA polymerase Rpb2, domain 2 superfamilyGENE3D3.90.1110.10RNA polymerase Rpb2, domain 2coord: 201..372
e-value: 6.5E-39
score: 135.2
IPR007645RNA polymerase Rpb2, domain 3PFAMPF04565RNA_pol_Rpb2_3coord: 454..518
e-value: 3.5E-25
score: 87.9
NoneNo IPR availableGENE3D3.90.1100.10coord: 16..200
e-value: 7.5E-40
score: 139.1
NoneNo IPR availableGENE3D3.90.1070.20coord: 521..585
e-value: 2.5E-19
score: 70.6
NoneNo IPR availablePANTHERPTHR20856:SF23DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 3..583
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 6..580
IPR007642RNA polymerase Rpb2, domain 2PFAMPF04561RNA_pol_Rpb2_2coord: 191..382
e-value: 5.4E-48
score: 163.2
IPR007644RNA polymerase, beta subunit, protrusionPFAMPF04563RNA_pol_Rpb2_1coord: 23..429
e-value: 1.9E-64
score: 217.2
IPR015712DNA-directed RNA polymerase, subunit 2PANTHERPTHR20856DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2coord: 3..583

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6027contigP-wetherbeei_contig6027:512..3533 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6027.1.2mRNA_P-wetherbeei_contig6027.1.2Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig6027 512..3533 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig6027.1.2 ID=prot_P-wetherbeei_contig6027.1.2|Name=mRNA_P-wetherbeei_contig6027.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=586bp
PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDI
YVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARL
RNMTYSAPLYCDIDCTVYRSEDTTAEPEQQQSTEKEFLGYVPIMLRCSFC
VLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKK
QPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPY
VRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQ
TQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKG
FFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLT
KDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRA
GVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAET
PEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALP
KCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR037034RNA_pol_Rpb2_2_sf
IPR007645RNA_pol_Rpb2_3
IPR007642RNA_pol_Rpb2_2
IPR007644RNA_pol_bsu_protrusion
IPR015712DNA-dir_RNA_pol_su2