mRNA_P-wetherbeei_contig6027.1.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6027.1.2
Unique NamemRNA_P-wetherbeei_contig6027.1.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A835YQ41_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ41_9STRA)

HSP 1 Score: 945 bits (2442), Expect = 0.000e+0
Identity = 453/592 (76.52%), Postives = 518/592 (87.50%), Query Frame = 1
Query:    1 PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAEPEQQQST------EKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            P  E I QEDAW+VI++YFAEKGLVRQQLDSFDEF+NNTMQE+V+E+GDI V PEPQY+PGME  ++TF+I F QVYLSKPIV+EKDGSVTNM+PHEARLRN+TYSAPLYCDIDC +Y +++  A  + + S       + EFLGYVPIMLRCSFCVLA+++D+ELTELGECIYDQGGYF+ING +KVLIAQERMSNNHVYCF+KKQPSKF WVCE RSH +   RPTSTM+LQMY KGPK S+I+GGQIR TLPYVR DVP+VLIFRALGFVNDKTILEHI YDF D E+MEKFRPSLEEA+ +Q++ LALDFIGKRGSA++VGRNER+QYAK LLQKEVLPHV T    ET+KGFFLGYVVHKLLMC+LGRLEEDDRDHYGKKRLDLAGPLVAGLFRT             QKCLDEG+ FV+GVAI+S T+TNGL+YS+ATGNWGD+K+AT+AGVSQVL+RLT+ASALSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVGCAL+PI+EFLEEWA E+LEEISPS IA  +CTKIF+NGNW+G+HREPN L+ TL  QRR + + A
Sbjct:   11 PHEEEITQEDAWQVISSYFAEKGLVRQQLDSFDEFINNTMQEIVTESGDIRVTPEPQYLPGMEVTKKTFQIKFNQVYLSKPIVIEKDGSVTNMFPHEARLRNLTYSAPLYCDIDCKIYDADNPAAPIDDKASILLAAYWKYEFLGYVPIMLRCSFCVLADRSDRELTELGECIYDQGGYFIINGRQKVLIAQERMSNNHVYCFRKKQPSKFHWVCETRSHVEGGTRPTSTMYLQMYVKGPKHSQIAGGQIRTTLPYVRTDVPIVLIFRALGFVNDKTILEHIVYDFSDAEMMEKFRPSLEEADVIQSRTLALDFIGKRGSAANVGRNERIQYAKGLLQKEVLPHVGTDEASETKKGFFLGYVVHKLLMCSLGRLEEDDRDHYGKKRLDLAGPLVAGLFRTXXXXXXXXXXXXXQKCLDEGRGFVLGVAIKSNTITNGLRYSLATGNWGDQKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGCALSPILEFLEEWATENLEEISPSTIAEKQCTKIFVNGNWIGIHREPNQLVRTLVIQRRCLDIDA 602          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: D7FHZ3_ECTSI (DNA-directed RNA polymerase subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHZ3_ECTSI)

HSP 1 Score: 893 bits (2307), Expect = 9.360e-313
Identity = 429/592 (72.47%), Postives = 505/592 (85.30%), Query Frame = 1
Query:    1 PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRS-------EDTTA-EPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 1752
            P  E+I+QEDAW VI+AYF+EKGLVRQQLDSFDEFL +TM E+VS  G+I + PE QY+PG + VRRTF+I+FGQVYL+KP   EKDGS+T+M+PHEARLRN+TY++PLYCDI C  Y +       ED    E E+++   KEFLG+VPIMLR SFCVL N+TDKELTELGECIYDQGGYFVINGSEKVLIA ERMS NHVYCFKK+QPSKF W  E+RS  D S RP S+MFLQMYAKG + S+++GG IRA LPY+R DVPVVL+FRALG+ NDK ILEHI YDF DT++MEKFRPSLEEA+ +Q Q++A DFIGKRGSA +VGRNER+ YAK LLQ+E LPHV      E +K FFLGY+VHKLLMC+LGRLEEDDRDHYGKKRLDLAG L+AGLFR LFRKLT+++RKYLQ CLD+G QFV+G AI+SQ +T+GLKYS+ATGNWGDKK+AT+AGVSQVL+RLT+ASALSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALMAYISVGC+L+PI+EFLEEWAME+L+EI+P  IA   CTK+F+NGNW+GVHR+PN L++TL  QRR + +
Sbjct:   98 PLEEDISQEDAWVVISAYFSEKGLVRQQLDSFDEFLQSTMHELVSSAGEIKITPELQYMPGQDTVRRTFQINFGQVYLAKPTAREKDGSLTSMFPHEARLRNLTYNSPLYCDISCKTYEADVGDRSQEDGEGLEAEEERENPKEFLGWVPIMLRSSFCVLVNRTDKELTELGECIYDQGGYFVINGSEKVLIANERMSTNHVYCFKKRQPSKFTWTSEIRSFVDNSGRPPSSMFLQMYAKGTQHSKVNGGHIRAQLPYIRTDVPVVLVFRALGYTNDKAILEHIVYDFSDTDMMEKFRPSLEEADVIQNQVVAQDFIGKRGSAVNVGRNERINYAKGLLQREFLPHVGIGAGTEAKKVFFLGYMVHKLLMCSLGRLEEDDRDHYGKKRLDLAGALLAGLFRQLFRKLTQNVRKYLQLCLDKGTQFVVGTAIKSQFITDGLKYSLATGNWGDKKTATKAGVSQVLNRLTYASALSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYISVGCSLSPILEFLEEWAMENLDEIAPHMIAQTNCTKVFVNGNWVGVHRDPNRLVQTLVHQRRALDI 689          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A425D5T0_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A425D5T0_9STRA)

HSP 1 Score: 822 bits (2124), Expect = 1.050e-289
Identity = 395/588 (67.18%), Postives = 484/588 (82.31%), Query Frame = 1
Query:   13 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  Y++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R  RPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:   16 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGTVPIEEQDPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 601          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A024TRP0_9STRA (DNA-directed RNA polymerase subunit beta n=17 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024TRP0_9STRA)

HSP 1 Score: 822 bits (2124), Expect = 1.930e-286
Identity = 395/588 (67.18%), Postives = 485/588 (82.48%), Query Frame = 1
Query:   13 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  +++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R ARPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:    8 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKSNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKFQAGTVPIEEQEPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGARPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 593          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: K3XBN8_GLOUD (DNA-directed RNA polymerase subunit beta n=28 Tax=Oomycota TaxID=4762 RepID=K3XBN8_GLOUD)

HSP 1 Score: 816 bits (2108), Expect = 9.020e-284
Identity = 393/592 (66.39%), Postives = 476/592 (80.41%), Query Frame = 1
Query:    7 GENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT--FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT------TAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            G +++QEDAW VI++YF EKGLVRQQLDSFDEF+ NTMQE+V ++  I + PE QY PG         + ISFGQ+YLSKP + E DGS + M+PHEARLRN+TY+APLY D+ C  Y++  +         P  Q  T KEF+G VPIMLR  +CVL +KTDKELTEL EC+YDQGGYF+INGSEKVLIAQERMSNNHVYCF+K   SK+ WVCE RSH +   RPTSTM++QMY +    S I+G QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGR+ EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ +LQKC+D GK F + +AIRS+T+TNGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQA+PRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEWA E+LEEI P  I  P  TKIF+NGNW+GVHREPN LI TL+  RR V + A
Sbjct:   24 GASVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRSIRINPEAQYAPGQNKANTDTIYNISFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYAAPLYVDVVCEKYQAPASGPADLDQIAPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFIINGSEKVLIAQERMSNNHVYCFRKTGASKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAITGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFSDAELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVSKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGGLFRILFKKLTKDVKSFLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELIRTLRSLRRCVDIDA 613          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: F0WJN8_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Oomycota TaxID=4762 RepID=F0WJN8_9STRA)

HSP 1 Score: 817 bits (2111), Expect = 9.290e-284
Identity = 395/592 (66.72%), Postives = 476/592 (80.41%), Query Frame = 1
Query:    7 GENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT--FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT------TAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            G +++QEDAW VI++YF EKGLVRQQLDSFDEF+ NTMQE+V ++  I + PE QY PG         + I FGQ+YLSKP + E DGS + M+PHEARLRN+TYSAPLY D+ C  +++  T        EP  Q  T KEF+G VPIMLR  +CVL +KTDKELTEL EC+YDQGGYF+INGSEKVLIAQERMSNNHVYCF+K   SK+ WVCE RSH +   RPTSTM++QMY +    S ISG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +VG+ +R++YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGR+ EDDRDHYG KRLDLAGPL+  LFR LF+KLTKD++ YLQKC+D GK F + +AIRS+T+TNGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQA+PRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEWA E+LEEI P  I  P  TKIF+NGNW+GVHREPN L+ TL+  RR V + A
Sbjct:   52 GSSVSQEDAWAVISSYFEEKGLVRQQLDSFDEFIQNTMQELVDDSRHIRINPEAQYTPGQAKAATDTIYVIQFGQIYLSKPTMTEADGSTSVMFPHEARLRNLTYSAPLYVDVVCQKFQANATGPTKIEEMEPYDQVETPKEFIGMVPIMLRSQYCVLTHKTDKELTELNECVYDQGGYFLINGSEKVLIAQERMSNNHVYCFRKSGVSKYSWVCETRSHVEHGVRPTSTMYVQMYQRSGGKSAISGNQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAINVGKADRIRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRIGEDDRDHYGNKRLDLAGPLLGSLFRILFKKLTKDVKTYLQKCVDNGKDFNLTLAIRSRTITNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAQPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWATENLEEIKPQII--PHSTKIFVNGNWVGVHREPNELVRTLRSLRRCVDIDA 641          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A418E4H4_9STRA (DNA-directed RNA polymerase subunit beta n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418E4H4_9STRA)

HSP 1 Score: 809 bits (2090), Expect = 5.980e-281
Identity = 395/611 (64.65%), Postives = 484/611 (79.21%), Query Frame = 1
Query:   13 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT---FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDTTAE---PEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQ-----------------------YAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            N++QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE++ ++ DI + PE QY PG +  R T   ++I FGQ+YLSK  + E DGS + M+PHEARLRN+TYSAPLY D+ C  Y++     E   P ++++T KEF+G +PIMLR  +CVL +K+DKELTEL EC+YDQGGYFVINGSEKVLIAQERMSNNHVYCFKK   SK+ WVCE RSH +R  RPTSTM++QMYAK    S +SG QIRA +PY+R D+PVV+IFRALGFV D+ ILEHI YDF D ELME+F+PSLEEA  +Q Q +ALDFIG+RGSA +V + +R++                       YA+++LQKE+LPHV    H ET+K +FLGYVVHKLLMC+LGRL EDDRDHYG KRLDLAGPL+ GLFR LF+KLTKD++ YLQKC+D G+ F + +AI+S+T++NGL+YS+ATGNWG +K+A++AGVSQVL+RLT+AS+LSHLRRLNTPLGREGKQAKPRQLHNTHWGM+CPAETPEGQAVGLVKNLALMAYISVG    PI+EFLEEW+ E+LEEI+   I  P  TKIF+NGNW+GVHREPN L++TL+  RR V + A
Sbjct:   16 NVSQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELIDDSRDIRITPEAQYNPGQKTNRVTDTIYQIQFGQIYLSKCTMTESDGSTSVMFPHEARLRNLTYSAPLYVDVTCQKYQAGTVPIEEQDPYEEETTAKEFIGSIPIMLRSKYCVLTDKSDKELTELNECVYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKSSISKYSWVCETRSHVERGVRPTSTMYVQMYAKSGGKSAVSGHQIRAVIPYIRQDIPVVIIFRALGFVADREILEHICYDFTDVELMERFKPSLEEAFVIQEQEVALDFIGRRGSAVNVSKADRLRCVVCPFSKIYIFKYFKKIFFFPRYAQDILQKEMLPHVGVEDHNETKKAYFLGYVVHKLLMCSLGRLGEDDRDHYGNKRLDLAGPLLGGLFRVLFKKLTKDVKGYLQKCVDAGRDFQLSLAIKSKTISNGLRYSLATGNWGMQKTASKAGVSQVLNRLTYASSLSHLRRLNTPLGREGKQAKPRQLHNTHWGMICPAETPEGQAVGLVKNLALMAYISVGSPQAPILEFLEEWSTENLEEITAQII--PTATKIFVNGNWVGVHREPNELVKTLRSLRRCVDIDA 624          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: A0A8J2SZW4_9STRA (DNA-directed RNA polymerase subunit beta n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SZW4_9STRA)

HSP 1 Score: 809 bits (2090), Expect = 1.840e-280
Identity = 397/643 (61.74%), Postives = 484/643 (75.27%), Query Frame = 1
Query:   13 NIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPVRRT-FRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYRSEDT---------------------------------TAEPEQQQS-----------------------------TEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 1752
            +I QEDAW VI+AYFAEKGLVRQQLDSFDEF+ NTMQE+V ++G+++V PE QY+PG + + R  F + F QVY+SKP   E+DG+ +NM+PHEARLRNMTYS+P+Y DI C    S  T                                 TA P Q                                + KEFLGYVPIMLR  FCVLA+K+D+EL ELGEC+YDQGGYF+INGSEKV++AQERMSNNHVYCF+KKQP K+ WV E RSH +  ARPTST+++QMY K  +     G QIR TLPYVR D+PV+++FRALGFV D+ ILEH+ YDF DT++ME+ RPSL+EA  VQ Q +ALDFIG+RGSA+++GR++RVQYAKELLQKEVLPHV T    +T+K FF+GY+VHKLLMC+L R++EDDRDHYGKKRLDLAGPL+ GLFR LFRKLTKD+  YLQKC+DE + F +  AI+S+ +T+GL+YS+ATGNWGD+K A+RAGVSQVL+RLT+AS LSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALMAY+SVG   +PI+EFLEEW+ME+LEEISP  IA P  TKIF+NG+W+GVHR+P TL  TL+  RR + +
Sbjct:    2 DITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELHVEPEAQYLPGQKSLHRNKFTVVFNQVYVSKPTATERDGTTSNMFPHEARLRNMTYSSPIYVDISCIEPESTATLHQGCQAELYIENDWYPCVVDELKSGRANVTYETAGPLQDSDKVVIVKESDVEVSSRIRLPSGLAKAHRTDSPKEFLGYVPIMLRSRFCVLADKSDRELCELGECVYDQGGYFIINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTVYMQMYNKAGRGQS-QGNQIRMTLPYVRVDIPVIIVFRALGFVADRDILEHVVYDFSDTDMMERLRPSLDEAFVVQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDEARDFNLASAIKSRLITDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMAYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWIGVHRDPCTLEATLRSLRRQIDI 643          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: F0YGN2_AURAN (DNA-directed RNA polymerase subunit beta n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGN2_AURAN)

HSP 1 Score: 807 bits (2085), Expect = 7.480e-280
Identity = 395/643 (61.43%), Postives = 483/643 (75.12%), Query Frame = 1
Query:   16 IAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPG-MEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCT--------------------------------------------VYRSEDTTAEPEQQQ-------------------STEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSL 1752
            I QEDAW VI+AYFAEKGLVRQQLDSFDEF+ NTMQE+V ++G++ V+PE QY PG +     T+ + F QVY+SKP   EKDG+ +NM+PHEARLRNMTY++P+Y DI C                                             ++  +D     E+                      + KEFLGYVPIMLR  FCVLA+K+DKEL ELGECIYDQGGYFVINGSEKV++AQERMSNNHVYCF+KKQP K+ WV E RSH +  ARPTST+++QMY K  +     G QIR TLPYVR DVPV+++FRALGFV D+ ILEH+ YDF DTE+ME+ RPSL+EA  +Q Q +ALDFIG+RGSA+++GR++RVQYAKELLQKEVLPHV T    +T+K FF+GY+VHKLLMC+L R++EDDRDHYGKKRLDLAGPL+ GLFR LFRKLTKD+  YLQKC+D+G+ F +  AI+S+ +T+GL+YS+ATGNWGD+K A+RAGVSQVL+RLT+AS LSHLRRLNTPLGREGKQAKPRQLHNTHWG +CPAETPEGQAVGLVKNLALM+Y+SVG   +PI+EFLEEW+ME+LEEISP  IA P  TKIF+NG+W+GVHR+P+TL  TL+  RR + +
Sbjct:    3 ITQEDAWTVISAYFAEKGLVRQQLDSFDEFIQNTMQELVDDSGELVVKPEAQYAPGQLAATPSTYFVLFNQVYVSKPTATEKDGTTSNMFPHEARLRNMTYASPMYVDISCVEQKQASPLRQGCAAELEIHGDWYPCVITKLSDGYATVTYEVVGPIHSGDDQIQVVEEHHVDVSARVRLINGGSSTHRIDSPKEFLGYVPIMLRSRFCVLADKSDKELCELGECIYDQGGYFVINGSEKVVVAQERMSNNHVYCFRKKQPHKYSWVVECRSHVEHGARPTSTIYMQMYNKAGRGQS-QGNQIRVTLPYVRVDVPVIVVFRALGFVADRDILEHVVYDFSDTEMMERLRPSLDEAFVIQNQTIALDFIGRRGSATNIGRSKRVQYAKELLQKEVLPHVGTEEQSDTKKAFFVGYIVHKLLMCSLERIDEDDRDHYGKKRLDLAGPLLGGLFRMLFRKLTKDVLAYLQKCIDDGRDFNLASAIKSRVVTDGLRYSLATGNWGDRKDASRAGVSQVLNRLTYASTLSHLRRLNTPLGREGKQAKPRQLHNTHWGFICPAETPEGQAVGLVKNLALMSYVSVGSPQSPILEFLEEWSMENLEEISPQTIADPGTTKIFVNGSWVGVHRDPSTLESTLRSLRRQIDI 644          
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Match: B8C598_THAPS (DNA-directed RNA polymerase subunit beta n=2 Tax=Bacillariophyta TaxID=2836 RepID=B8C598_THAPS)

HSP 1 Score: 802 bits (2071), Expect = 3.130e-278
Identity = 388/601 (64.56%), Postives = 475/601 (79.03%), Query Frame = 1
Query:   16 IAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDIYVRPEPQYVPGMEPV----------RRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARLRNMTYSAPLYCDIDCTVYR----------SEDTTAEPEQQQSTEKEFLGYVPIMLRCSFCVLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKKQPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPYVRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQTQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKGFFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLTKDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRAGVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAETPEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALPKCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA 1758
            + QEDAW VI+AYF EKGLVRQQLDSFDEF+ NTMQE+V ++G I V PE Q++ G +            ++ F + FGQVYLSKP  VEKDG+VTNM+PHEARLRN+TY+APLY D+    YR          +ED   EP   +   KEFLGYVPIMLR  FCVL++K D +L +LGECIYDQGGYFVINGSEKV++AQERMSNNHVY FKKKQPSKF WV E RS  + S RPTST+++QMY KG K + I G QIR+TLPY+R D+PVV+IFRALG+V D+ I+EH+ YD  D E+M+ FRPSLEEA  +Q Q +ALDFIG+RGSA  V +++R++YA  +LQKEVLPHV T  HCET+KGFFLGY VHKLLMC LGR +EDDRDH+GKKRLDLAGPL+ GLFR LFRKLTKD+RK+LQ+CLDEGK F +G AI+S  +++GLKYS+ATGNWGDK + ++AGVSQVL+RLT+AS+LSHLRR NTPL R GKQAKPRQLHN+HWGMVCPAETPEGQAVGLVKN+ALMAYI+ G +  P++EFLEE++ E+L +I PS IA P   KIF+NGNW+G+HR+P  L+ T +  RR++ + A
Sbjct:    8 VTQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQELVDDSGSIRVSPEIQHLVGYDEANFDETMNSTTKKVFEVKFGQVYLSKPTTVEKDGTVTNMFPHEARLRNLTYAAPLYVDVTMNEYRVGNDVNVGDPAEDM-GEPVSTEEARKEFLGYVPIMLRSLFCVLSDKDDAQLADLGECIYDQGGYFVINGSEKVIVAQERMSNNHVYAFKKKQPSKFSWVIETRSQVENSTRPTSTLYIQMYQKGGKGA-IEGNQIRSTLPYIRTDIPVVIIFRALGYVADRDIIEHVVYDLTDGEMMDLFRPSLEEAFVIQKQEVALDFIGRRGSARDVTKDDRIRYAAGILQKEVLPHVGTEEHCETKKGFFLGYAVHKLLMCKLGRADEDDRDHFGKKRLDLAGPLLGGLFRVLFRKLTKDVRKHLQRCLDEGKHFNIGAAIKSNHISDGLKYSLATGNWGDKGNTSKAGVSQVLNRLTYASSLSHLRRSNTPLARTGKQAKPRQLHNSHWGMVCPAETPEGQAVGLVKNMALMAYITTGTSQVPVMEFLEEFSTENLTDILPSVIAEPNTCKIFVNGNWVGIHRDPKQLVHTFRSLRRMIDIDA 606          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6027.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YQ41_9STRA0.000e+076.52DNA-directed RNA polymerase subunit beta n=1 Tax=T... [more]
D7FHZ3_ECTSI9.360e-31372.47DNA-directed RNA polymerase subunit beta n=1 Tax=E... [more]
A0A425D5T0_9STRA1.050e-28967.18DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
A0A024TRP0_9STRA1.930e-28667.18DNA-directed RNA polymerase subunit beta n=17 Tax=... [more]
K3XBN8_GLOUD9.020e-28466.39DNA-directed RNA polymerase subunit beta n=28 Tax=... [more]
F0WJN8_9STRA9.290e-28466.72DNA-directed RNA polymerase subunit beta n=4 Tax=O... [more]
A0A418E4H4_9STRA5.980e-28164.65DNA-directed RNA polymerase subunit beta n=4 Tax=A... [more]
A0A8J2SZW4_9STRA1.840e-28061.74DNA-directed RNA polymerase subunit beta n=1 Tax=P... [more]
F0YGN2_AURAN7.480e-28061.43DNA-directed RNA polymerase subunit beta n=1 Tax=A... [more]
B8C598_THAPS3.130e-27864.56DNA-directed RNA polymerase subunit beta n=2 Tax=B... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6027contigP-wetherbeei_contig6027:512..3533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHZ3
Preferred nameRPB2
PFAMsRNA_pol_Rpb2_1,RNA_pol_Rpb2_2,RNA_pol_Rpb2_3,RNA_pol_Rpb2_4,RNA_pol_Rpb2_5,RNA_pol_Rpb2_6,RNA_pol_Rpb2_7
Model size1758
Max annot lvl2759|Eukaryota
KEGG rclassRC02795
KEGG koko:K03010
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05169,map00230,map00240,map01100,map03020,map05016,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003899,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0005829,GO:0005911,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010605,GO:0010608,GO:0010629,GO:0014070,GO:0016070,GO:0016441,GO:0016458,GO:0016591,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019222,GO:0019438,GO:0030054,GO:0030880,GO:0031047,GO:0031050,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0035194,GO:0035195,GO:0035196,GO:0035770,GO:0036464,GO:0040029,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043331,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0048519,GO:0050789,GO:0050896,GO:0051716,GO:0055029,GO:0055044,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070887,GO:0070918,GO:0071310,GO:0071359,GO:0071407,GO:0071704,GO:0090304,GO:0097159,GO:0097659,GO:0097747,GO:0140098,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901698,GO:1901699,GO:1902494,GO:1990234,GO:1990904
Exons4
Evalue1.54e-313
EggNOG OGsCOG0085@1|root,KOG0214@2759|Eukaryota
Ec32 ortholog descriptionRNA polymerase Rpb2, domain 5
Ec32 orthologEc-12_006450.1
EC2.7.7.6
DescriptionDNA-directed 5'-3' RNA polymerase activity
Cds size1758
COG categoryK
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.7471595-CDS-P-wetherbeei_contig6027:511..7361683186883.7471595-CDS-P-wetherbeei_contig6027:511..736Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6027 512..736 +
1683186883.7619627-CDS-P-wetherbeei_contig6027:1386..16351683186883.7619627-CDS-P-wetherbeei_contig6027:1386..1635Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6027 1387..1635 +
1683186883.7707963-CDS-P-wetherbeei_contig6027:2002..28901683186883.7707963-CDS-P-wetherbeei_contig6027:2002..2890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6027 2003..2890 +
1683186883.7791336-CDS-P-wetherbeei_contig6027:3137..35331683186883.7791336-CDS-P-wetherbeei_contig6027:3137..3533Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6027 3138..3533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6027.1.2prot_P-wetherbeei_contig6027.1.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6027 512..3533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6027.1.2

>prot_P-wetherbeei_contig6027.1.2 ID=prot_P-wetherbeei_contig6027.1.2|Name=mRNA_P-wetherbeei_contig6027.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=586bp
PEGENIAQEDAWKVITAYFAEKGLVRQQLDSFDEFLNNTMQEVVSETGDI
YVRPEPQYVPGMEPVRRTFRISFGQVYLSKPIVVEKDGSVTNMYPHEARL
RNMTYSAPLYCDIDCTVYRSEDTTAEPEQQQSTEKEFLGYVPIMLRCSFC
VLANKTDKELTELGECIYDQGGYFVINGSEKVLIAQERMSNNHVYCFKKK
QPSKFQWVCEVRSHADRSARPTSTMFLQMYAKGPKASEISGGQIRATLPY
VRADVPVVLIFRALGFVNDKTILEHIAYDFHDTELMEKFRPSLEEAEPVQ
TQLLALDFIGKRGSASSVGRNERVQYAKELLQKEVLPHVSTAPHCETRKG
FFLGYVVHKLLMCALGRLEEDDRDHYGKKRLDLAGPLVAGLFRTLFRKLT
KDMRKYLQKCLDEGKQFVMGVAIRSQTLTNGLKYSIATGNWGDKKSATRA
GVSQVLSRLTFASALSHLRRLNTPLGREGKQAKPRQLHNTHWGMVCPAET
PEGQAVGLVKNLALMAYISVGCALNPIIEFLEEWAMESLEEISPSDIALP
KCTKIFLNGNWLGVHREPNTLIETLKRQRRLVSLFA
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mRNA from alignment at P-wetherbeei_contig6027:512..3533+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6027.1.2 ID=mRNA_P-wetherbeei_contig6027.1.2|Name=mRNA_P-wetherbeei_contig6027.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3022bp|location=Sequence derived from alignment at P-wetherbeei_contig6027:512..3533+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGAAGGAGAGAACATTGCCCAGGAGGATGCGTGGAAGGTGATCACCGC CTACTTTGCGGAGAAAGGGCTGGTACGGCAACAGCTGGACTCCTTCGATG AGTTTCTTAACAACACGATGCAGGAAGTGGTCTCGGAGACCGGCGACATT TACGTGCGGCCGGAGCCGCAGTACGTCCCGGGCATGGAGCCAGTTCGTCG AACCTTCCGCATCAGCTTTGGGCAGGTGAGCTGCAAGGTCTGCTTTTCCG ATTGGACTTGACTCTTACCGTCGGGAAAGGTATGATGCTCTGCAGAAACT TCTCTATGCAAGTAGCATTTCTGGGATGAACGGAAGATTCAATAAAACTG CCTACAGTATCGCTTCTATCGCCGGCAGAAGTTGTGGTTTTCGGTGAGCG CAGCCGGGCACACAATTTTTTGCAGCTAGCTGCTCTTGACAGCGGGCTTA ACTATGTCTTCATTGAATGTTGACCTGCTCAAGACTATGTCTAACTGCTG GTCGAATTGGGGTTGGCAGTCCTCCTACTATGTCATCTTCATGGCATCTC TGTTATGAGCGGCGGTTTGCTAAACCATGCATTGCAGCCCCGTCGGAATG AGGATCACTTGTGGCAAGGGAAAGCGCCCTGTAGGAGCTTTCATTGTGCA GGGAACTTGGTGTTTCGGAAGCTGCTCTGGTGATCCAATGAAAAGAAATA GGCATCTCTACGCGCCGGCGAAATTTAGTTTTAGAAAAGGCAATTCTGTG CCTCTCGTTTCCTGCCGCCCAAACTCTGACGATGATTCCGTGTTCCAATG TAAGCGCTGTGCTGTCTTATCACCTTTTCTTTCTCCTTGCATCTTTCCTT TTCCCGTTCCGAAAAAACAACGAAGGTGTACCTGAGCAAGCCGATCGTGG TGGAGAAGGACGGATCCGTGACCAACATGTACCCGCACGAGGCGCGGCTG CGCAACATGACCTACTCGGCGCCGCTGTACTGCGACATTGACTGCACGGT GTACCGCTCAGAGGACACGACGGCCGAGCCCGAGCAGCAGCAAAGCACAG AAAAGGAGTTTTTGGGATACGTGCCCATCATGCTCCGCTGCTCCTTCTGT GTCCTTGCCAACAAGACCGACAAGGTCAGTCAGAGAAGGAGGGATTTTGG TTGGGTTAATCTTCCCGGCTGGTTTCGCTCTGCTGGCGGGTTCTTAAAAA AGAGAGAAAGGTACAGAGAAGGGGCCCGCGCAGAATTGTGGGGCTGAGAG AAGAAAGGAAAGTTGGATGGAGCTATGGAAGGCGAAAGTTTCAAGGGCGA CGGACATATTTTTGCGGTTTTTGATTATCAGCTATTGGGCAGGCTCCATG CTTCCGAAGCGGGTTTTGTGCTTCATGCCTGCACCACACATTCCACGCAC CTACCTATGCTTAAGCTTGCTGCCGCAAATGCCTCTCGCGGGCCTGATGA CTTACTTTTATGCCTTGACATTGATGTTCATTATGATGCAGGAATTGACG GAGCTGGGGGAGTGCATCTACGACCAGGGTGGCTATTTTGTCATCAACGG CTCGGAGAAAGTACTCATTGCGCAGGAGCGCATGTCCAACAACCACGTCT ACTGCTTCAAAAAGAAGCAGCCCTCCAAGTTCCAGTGGGTCTGCGAGGTT CGCTCCCACGCCGATCGCAGCGCCCGCCCGACCAGCACCATGTTCCTGCA GATGTACGCCAAGGGTCCAAAGGCCAGCGAGATCTCCGGCGGACAGATCC GGGCGACGCTGCCGTACGTGCGGGCCGACGTGCCGGTGGTGCTGATCTTC CGGGCGCTGGGCTTCGTCAACGATAAGACCATCCTGGAGCACATCGCCTA TGATTTCCACGACACGGAGCTCATGGAGAAGTTTCGGCCGAGCCTGGAGG AGGCCGAGCCAGTGCAGACGCAGCTGCTGGCACTCGACTTCATCGGCAAG CGCGGCTCTGCCAGCAGCGTCGGGCGCAACGAGCGCGTGCAGTATGCCAA AGAGCTGCTGCAAAAGGAGGTGCTGCCGCACGTGTCGACGGCGCCGCACT GCGAGACGCGCAAGGGCTTCTTCCTCGGCTATGTCGTTCACAAGCTGCTC ATGTGCGCACTCGGACGGCTGGAAGAGGACGACCGGGACCACTACGGTAA GAAGCGGCTGGACCTGGCAGGGCCGCTGGTGGCGGGGCTGTTCCGGACGC TGTTCCGCAAGCTGACGAAGGACATGCGCAAGTACCTACAAAAGTGCCTC GACGAGGGAAAGCAGTTCGTCATGGGCGTTGCCATCCGCAGCCAGACGCT CACCAACGGCCTCAAGTACTCCATCGCAACGGGCAACTGGGGCGACAAAA AGAGCGCCACGCGCGCCGGCGTCAGCCAGGTATGCGCTTCGGTCGGGCTC TTCTCTTTTTCCTAGTTTCGGTTTTGGGTTTTCAGGGCTCATTTTGTTCT GTCTTTTGATCATTTCTGTTTGTTTTGGACATGTGCTTACTTAAAGTTTT CTATGGTTGCGCTCGCTTCTTAGCTAGGTCATGCACAGCGCTTTCCTGCG CCATCCTCTGGCGTTTTCTTGCCTACTAATTCGTCCTTTTAATACCGTTT CTTCGCCCCCACTTGTTGTGCCGCAGGTGTTGAGCCGGCTGACGTTCGCG TCAGCGCTGTCGCATCTCCGGCGGCTCAACACGCCGCTGGGCCGCGAGGG CAAGCAGGCCAAGCCGCGGCAGCTGCACAACACGCACTGGGGTATGGTCT GCCCGGCCGAGACGCCCGAGGGGCAGGCCGTCGGGCTTGTCAAGAACCTG GCGCTCATGGCATACATCTCCGTCGGCTGTGCGCTGAACCCGATCATTGA ATTCCTGGAGGAGTGGGCGATGGAGTCGCTCGAGGAGATTTCGCCGTCGG ACATTGCGCTGCCCAAGTGTACCAAGATCTTCTTGAACGGCAACTGGTTG GGAGTGCACCGCGAGCCCAACACACTCATCGAGACGCTCAAGCGCCAACG GAGGTTAGTTAGCTTATTTGCT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6027:512..3533+

>mRNA_P-wetherbeei_contig6027.1.2 ID=mRNA_P-wetherbeei_contig6027.1.2|Name=mRNA_P-wetherbeei_contig6027.1.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1758bp|location=Sequence derived from alignment at P-wetherbeei_contig6027:512..3533+ (Phaeothamnion wetherbeei SAG_119_79)
CCGGAAGGAGAGAACATTGCCCAGGAGGATGCGTGGAAGGTGATCACCGC
CTACTTTGCGGAGAAAGGGCTGGTACGGCAACAGCTGGACTCCTTCGATG
AGTTTCTTAACAACACGATGCAGGAAGTGGTCTCGGAGACCGGCGACATT
TACGTGCGGCCGGAGCCGCAGTACGTCCCGGGCATGGAGCCAGTTCGTCG
AACCTTCCGCATCAGCTTTGGGCAGGTGTACCTGAGCAAGCCGATCGTGG
TGGAGAAGGACGGATCCGTGACCAACATGTACCCGCACGAGGCGCGGCTG
CGCAACATGACCTACTCGGCGCCGCTGTACTGCGACATTGACTGCACGGT
GTACCGCTCAGAGGACACGACGGCCGAGCCCGAGCAGCAGCAAAGCACAG
AAAAGGAGTTTTTGGGATACGTGCCCATCATGCTCCGCTGCTCCTTCTGT
GTCCTTGCCAACAAGACCGACAAGGAATTGACGGAGCTGGGGGAGTGCAT
CTACGACCAGGGTGGCTATTTTGTCATCAACGGCTCGGAGAAAGTACTCA
TTGCGCAGGAGCGCATGTCCAACAACCACGTCTACTGCTTCAAAAAGAAG
CAGCCCTCCAAGTTCCAGTGGGTCTGCGAGGTTCGCTCCCACGCCGATCG
CAGCGCCCGCCCGACCAGCACCATGTTCCTGCAGATGTACGCCAAGGGTC
CAAAGGCCAGCGAGATCTCCGGCGGACAGATCCGGGCGACGCTGCCGTAC
GTGCGGGCCGACGTGCCGGTGGTGCTGATCTTCCGGGCGCTGGGCTTCGT
CAACGATAAGACCATCCTGGAGCACATCGCCTATGATTTCCACGACACGG
AGCTCATGGAGAAGTTTCGGCCGAGCCTGGAGGAGGCCGAGCCAGTGCAG
ACGCAGCTGCTGGCACTCGACTTCATCGGCAAGCGCGGCTCTGCCAGCAG
CGTCGGGCGCAACGAGCGCGTGCAGTATGCCAAAGAGCTGCTGCAAAAGG
AGGTGCTGCCGCACGTGTCGACGGCGCCGCACTGCGAGACGCGCAAGGGC
TTCTTCCTCGGCTATGTCGTTCACAAGCTGCTCATGTGCGCACTCGGACG
GCTGGAAGAGGACGACCGGGACCACTACGGTAAGAAGCGGCTGGACCTGG
CAGGGCCGCTGGTGGCGGGGCTGTTCCGGACGCTGTTCCGCAAGCTGACG
AAGGACATGCGCAAGTACCTACAAAAGTGCCTCGACGAGGGAAAGCAGTT
CGTCATGGGCGTTGCCATCCGCAGCCAGACGCTCACCAACGGCCTCAAGT
ACTCCATCGCAACGGGCAACTGGGGCGACAAAAAGAGCGCCACGCGCGCC
GGCGTCAGCCAGGTGTTGAGCCGGCTGACGTTCGCGTCAGCGCTGTCGCA
TCTCCGGCGGCTCAACACGCCGCTGGGCCGCGAGGGCAAGCAGGCCAAGC
CGCGGCAGCTGCACAACACGCACTGGGGTATGGTCTGCCCGGCCGAGACG
CCCGAGGGGCAGGCCGTCGGGCTTGTCAAGAACCTGGCGCTCATGGCATA
CATCTCCGTCGGCTGTGCGCTGAACCCGATCATTGAATTCCTGGAGGAGT
GGGCGATGGAGTCGCTCGAGGAGATTTCGCCGTCGGACATTGCGCTGCCC
AAGTGTACCAAGATCTTCTTGAACGGCAACTGGTTGGGAGTGCACCGCGA
GCCCAACACACTCATCGAGACGCTCAAGCGCCAACGGAGGTTAGTTAGCT
TATTTGCT
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