mRNA_P-wetherbeei_contig6019.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6019.1.1
Unique NamemRNA_P-wetherbeei_contig6019.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6019.1.1 vs. uniprot
Match: A0A401SG82_CHIPU (Hedgehog protein n=2 Tax=Orectolobiformes TaxID=30503 RepID=A0A401SG82_CHIPU)

HSP 1 Score: 57.0 bits (136), Expect = 6.360e-5
Identity = 56/203 (27.59%), Postives = 83/203 (40.89%), Query Frame = 2 
Query:  227 CFPGDATVLLEDGRETPVRELRVGDRAQCFRSDEGAFGFCEVLTFTTADPDGAADLLRVQYKDGVEGVDGAGGDTAFPHFVDMNEEHFVWALRLFTNAQPNPSTAEAEPYDLPFGAMFRARDVRIGDLLISPAVADADAAAAATAHSGTAAEAAKHAKYQLHEVVGISERHSDGNGHYSPFAEHGAMPVINGITVSTFSGKEG 835
            CFPG+A+VL+EDGR   V +L+ GDR Q      G   F   +TF   DP       +++  +              P  + +   H V+    FT+   +P           F A F A +VR+G  L                HSG          ++   V GIS R  +G   Y+P  +HG + V+NG+  S F+  +G
Sbjct:  201 CFPGNASVLMEDGRRKRVSDLQPGDRVQTV-DHGGNVVFSSFVTFLDRDPRAVKVFHQLETLEP-------------PRRLLLTAAHLVFVADNFTS---DPGK---------FRATF-ASNVRVGQYLY------------VVGHSG----------HRPARVTGISMRELEGA--YAPLTQHGTL-VVNGVLASCFAAIDG 351
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6019.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A401SG82_CHIPU6.360e-527.59Hedgehog protein n=2 Tax=Orectolobiformes TaxID=30... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6019contigP-wetherbeei_contig6019:718..3012 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog946362.XP_004989416.1
Preferred namequa-1
PFAMsAIG1,HH_signal,Hint
Model size1842
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
GOsGO:0002119,GO:0002164,GO:0005575,GO:0005576,GO:0007275,GO:0008150,GO:0009791,GO:0018996,GO:0031012,GO:0032501,GO:0032502,GO:0042303,GO:0044421,GO:0048856,GO:0060102,GO:0062023
Exons3
Evalue8.33e-07
EggNOG OGsKOG3638@1|root,KOG3638@2759|Eukaryota
Descriptionintein-mediated protein splicing
Cds size1113
COG categoryM
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.055113-UTR-P-wetherbeei_contig6019:717..8951683186883.055113-UTR-P-wetherbeei_contig6019:717..895Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6019 718..895 +
1683186883.0910037-UTR-P-wetherbeei_contig6019:2461..30121683186883.0910037-UTR-P-wetherbeei_contig6019:2461..3012Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6019 2462..3012 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186883.0658376-CDS-P-wetherbeei_contig6019:895..11231683186883.0658376-CDS-P-wetherbeei_contig6019:895..1123Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6019 896..1123 +
1683186883.0743096-CDS-P-wetherbeei_contig6019:1326..13991683186883.0743096-CDS-P-wetherbeei_contig6019:1326..1399Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6019 1327..1399 +
1683186883.0827458-CDS-P-wetherbeei_contig6019:1649..24611683186883.0827458-CDS-P-wetherbeei_contig6019:1649..2461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6019 1650..2461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6019.1.1prot_P-wetherbeei_contig6019.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6019 896..2461 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6019.1.1

>prot_P-wetherbeei_contig6019.1.1 ID=prot_P-wetherbeei_contig6019.1.1|Name=mRNA_P-wetherbeei_contig6019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=371bp
MLFLLLLFSLLEGLATCFPGDATVLLEDGRETPVRELRVGDRAQCFRSDE
GAFGFCEVLTFTTADPDGAADLLRVQYKDGVEGVDGAGGDTAFPHFVDMN
EEHFVWALRLFTNAQPNPSTAEAEPYDLPFGAMFRARDVRIGDLLISPAV
ADADAAAAATAHSGTAAEAAKHAKYQLHEVVGISERHSDGNGHYSPFAEH
GAMPVINGITVSTFSGKEGTPRHSWLLWYSLWGQEPNSTRGTTGTGEGGS
GLPTGEDRLRTRGVRAADLKASSWVYASGRDAFAGAVRDLLELLWRRDGV
VVDFAAVMDHIGALAAVGVRITARETMEILAAHASLPSAGDDVGMAGHRH
RHHSVRRNNEIDDTSGSPQW*
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mRNA from alignment at P-wetherbeei_contig6019:718..3012+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6019.1.1 ID=mRNA_P-wetherbeei_contig6019.1.1|Name=mRNA_P-wetherbeei_contig6019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2295bp|location=Sequence derived from alignment at P-wetherbeei_contig6019:718..3012+ (Phaeothamnion wetherbeei SAG_119_79)
AGGCAAAGTATTACTACGCAAAGAGCGCAGAAAGGATACAGGAGGTGGAT
CGGAGAGCCCAACACGCAAGAGCGCGCATCGCCTTTCGTCGCGTCTTTTC
CGCCCCAGGAAAAGTCCCTAACGGCAACAGGAATTCCTGCAGATTGGTCC
CGCTCATCGGCTTTCGGACCGCGCGGCGATGCTCTTTCTTCTCCTTCTCT
TCTCCCTCTTGGAGGGGCTTGCTACGTGCTTTCCTGGCGACGCAACCGTG
CTGCTGGAGGACGGACGGGAAACGCCAGTGCGAGAGCTTCGCGTGGGCGA
CCGTGCGCAGTGCTTCAGAAGCGATGAAGGCGCTTTTGGATTCTGCGAAG
TGTTGACATTCACCACGGCAGATCCCGACGGTGCTGCAGACCTCCTGCGG
GTCCAGGTGAGGGCACCTTTCCTTGAGTGTGCTCCTGTTCGAAATTTGAA
GGCCCGAAAAGAAGGAAAGGCAGGTCAAGCAGGTACAGGTGTAGTATTCT
AGTTGCCACGCCGGGTTTGCGGGAGAGAAGAACCTGCCTGTGTTTTATGC
ACGTTCGTTTGGCTGATACCAGCACTGTTTATCCTTTTCTAATCCATCCC
CCTACGCAGTATAAGGATGGCGTCGAAGGCGTTGACGGCGCCGGAGGCGA
CACCGCTTTTCCCCATTTCGTGGATATGAACGGTATGAGAATGGATCGCG
ACGGCACTTTTCTCGTCCAAGCTTGCTATGACGAGAATAGCTTTGGGAGG
CAGTGTAGCCTTCTTTCCAACGTCGGACATTTGAATCATTGCAGTCCCCC
GTCCACCTGCGCGCCCATCCGTCCGTTTCACCTTCCATTTCTTTCCCACT
CCCCTCCATTTTCCCACTCGGCTTCAACGCCGTTCCCGTGCATCATTCTG
GCGCACTCACCGGCCGGCGGCCCCGCCCGCAGAGGAGCACTTCGTGTGGG
CGCTGCGGCTCTTCACGAACGCCCAACCCAACCCGAGCACCGCCGAAGCG
GAGCCGTACGACCTGCCGTTCGGCGCCATGTTCCGAGCGCGCGACGTCCG
CATCGGCGATCTTCTCATCTCCCCCGCCGTCGCCGACGCCGATGCCGCCG
CCGCCGCGACCGCCCACTCCGGCACAGCCGCTGAAGCGGCCAAGCACGCA
AAGTACCAGCTGCATGAAGTCGTAGGAATCAGCGAGCGGCACAGTGACGG
CAACGGCCACTATAGCCCGTTTGCAGAGCACGGCGCCATGCCCGTGATCA
ACGGCATCACCGTCTCCACATTTTCTGGCAAAGAAGGAACGCCAAGGCAC
AGCTGGCTGCTCTGGTACTCGCTCTGGGGCCAAGAGCCCAATAGCACCAG
GGGCACGACCGGGACCGGCGAGGGCGGCAGCGGCCTTCCGACGGGGGAGG
ACCGGCTTCGGACGCGCGGCGTGCGTGCCGCAGACCTCAAGGCGTCCAGT
TGGGTCTACGCATCGGGCCGCGATGCCTTCGCAGGCGCGGTACGGGACCT
GTTGGAGCTTTTATGGAGGCGCGATGGGGTTGTGGTGGACTTCGCCGCCG
TGATGGACCACATCGGCGCGTTAGCGGCGGTCGGCGTGCGCATCACGGCG
CGGGAGACGATGGAAATCCTCGCGGCGCACGCTTCCCTGCCGTCAGCCGG
CGACGACGTCGGGATGGCTGGCCACCGCCACCGTCACCACAGCGTCCGAC
GCAACAACGAGATTGACGACACATCAGGCTCTCCGCAGTGGTGATAGAAC
ACATCTCTCGCATCTTTGGACGCGGCCGTTACGGTGTTCGTCGCGGCTGC
CGTGCTTTTGGCTCCGCTGCCCGCCAGCCTCGAGGCCTAGCACAAGACTG
CGAATGGCGGCAGAGCCGCGAAACTCTGAGTGAGTCTGTGTTCTTCCTGG
GGCGTCCGTTCGCCGGATCCTTGGTGTCACCCGACGGCGTAGTAACACCT
CGTTTCCCGGCAGGGAGGGAGTGCGTTGAAGTGCACACACATGCATGAAG
TTGTTTAACCGGAAAGATTTTTTGCCGTGCGTGTGCGGGCGCGACGCGGT
TTGCCCCGACGGGCTCCAGTTGATGGCAGAACCAACGATCGAGAAGGTTT
CTGCTGTAGGTTGGTTGGCTTCTTTTCTTGACTCTTCTCCCTCTTCGTAG
TGGGTAGTGTTGTCGATTTGTATTGCCTTTAAGGTTTACAGGTGGTCGCA
AGGCGCAACGGGCAAAACAATACCCAACCGGCGCCCGAAAATGGGTACGA
GATGTACCTACTGGTAGAGGCGGTTGCAGGATGGGTGGGTTTCAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6019:718..3012+

>mRNA_P-wetherbeei_contig6019.1.1 ID=mRNA_P-wetherbeei_contig6019.1.1|Name=mRNA_P-wetherbeei_contig6019.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1113bp|location=Sequence derived from alignment at P-wetherbeei_contig6019:718..3012+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTTTCTTCTCCTTCTCTTCTCCCTCTTGGAGGGGCTTGCTACGTG
CTTTCCTGGCGACGCAACCGTGCTGCTGGAGGACGGACGGGAAACGCCAG
TGCGAGAGCTTCGCGTGGGCGACCGTGCGCAGTGCTTCAGAAGCGATGAA
GGCGCTTTTGGATTCTGCGAAGTGTTGACATTCACCACGGCAGATCCCGA
CGGTGCTGCAGACCTCCTGCGGGTCCAGTATAAGGATGGCGTCGAAGGCG
TTGACGGCGCCGGAGGCGACACCGCTTTTCCCCATTTCGTGGATATGAAC
GAGGAGCACTTCGTGTGGGCGCTGCGGCTCTTCACGAACGCCCAACCCAA
CCCGAGCACCGCCGAAGCGGAGCCGTACGACCTGCCGTTCGGCGCCATGT
TCCGAGCGCGCGACGTCCGCATCGGCGATCTTCTCATCTCCCCCGCCGTC
GCCGACGCCGATGCCGCCGCCGCCGCGACCGCCCACTCCGGCACAGCCGC
TGAAGCGGCCAAGCACGCAAAGTACCAGCTGCATGAAGTCGTAGGAATCA
GCGAGCGGCACAGTGACGGCAACGGCCACTATAGCCCGTTTGCAGAGCAC
GGCGCCATGCCCGTGATCAACGGCATCACCGTCTCCACATTTTCTGGCAA
AGAAGGAACGCCAAGGCACAGCTGGCTGCTCTGGTACTCGCTCTGGGGCC
AAGAGCCCAATAGCACCAGGGGCACGACCGGGACCGGCGAGGGCGGCAGC
GGCCTTCCGACGGGGGAGGACCGGCTTCGGACGCGCGGCGTGCGTGCCGC
AGACCTCAAGGCGTCCAGTTGGGTCTACGCATCGGGCCGCGATGCCTTCG
CAGGCGCGGTACGGGACCTGTTGGAGCTTTTATGGAGGCGCGATGGGGTT
GTGGTGGACTTCGCCGCCGTGATGGACCACATCGGCGCGTTAGCGGCGGT
CGGCGTGCGCATCACGGCGCGGGAGACGATGGAAATCCTCGCGGCGCACG
CTTCCCTGCCGTCAGCCGGCGACGACGTCGGGATGGCTGGCCACCGCCAC
CGTCACCACAGCGTCCGACGCAACAACGAGATTGACGACACATCAGGCTC
TCCGCAGTGGTGA
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