mRNA_P-wetherbeei_contig6016.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6016.1.1
Unique NamemRNA_P-wetherbeei_contig6016.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: UPI0019FD816E (Glycine zipper 2TM domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=UPI0019FD816E)

HSP 1 Score: 126 bits (316), Expect = 7.820e-35
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   79 QIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            Q+G G+G+TAA+IGGT        +IGR M   D +    + E  P NQ + WQ+   G  YQ+TP   +Q   GRYCREYQ+ AT+GGR++Q YGTACR PDG WQIMN
Sbjct:   16 QVGSGHGKTAAVIGGTXXXXXXXGHIGRSMDDVDQNCVGQILEHAPPNQPITWQDRSGGGQYQLTPSEAYQDRQGRYCREYQSTATIGGRQQQTYGTACRQPDGSWQIMN 125          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: UPI0019064D42 (RT0821/Lpp0805 family surface protein n=1 Tax=Rhodovibrio sodomensis TaxID=1088 RepID=UPI0019064D42)

HSP 1 Score: 127 bits (319), Expect = 4.640e-34
Identity = 56/110 (50.91%), Postives = 71/110 (64.55%), Query Frame = 1
Query:   79 QIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            Q G G+G+      G LIG + G  IGRG+   D +      E  P+ QT+AWQNPD G  Y+ TP RT+Q + GRYCREY   ATVGGR++Q YGTACR PDG W+I++
Sbjct:  112 QFGKGDGQLVTTGAGALIGVLLGGEIGRGLDSQDRACIGRTLETVPTGQTVAWQNPDNGAEYRTTPRRTYQTSSGRYCREYTTSATVGGRQQQVYGTACRQPDGSWEIVS 221          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A4P7C3V2_9GAMM (Glycine zipper 2TM domain-containing protein n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=A0A4P7C3V2_9GAMM)

HSP 1 Score: 121 bits (304), Expect = 5.180e-33
Identity = 58/110 (52.73%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   79 QIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            QIGDG GR  AIIGGTL G   G  IGR M   DH       E  P  +T+ W+ P     +QV P  TFQANDGRYCREY A + +G +  Q YGTACR PDG W+I N
Sbjct:   16 QIGDGRGRIIAIIGGTLAGFFLGGEIGRTMDEADHLCVDQALEYAPDGKTIEWRTPGENQRHQVIPHETFQANDGRYCREYTAKSIIGDKTVQTYGTACRQPDGSWRIAN 125          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: UPI00197D99E7 (glycine zipper 2TM domain-containing protein n=1 Tax=Nitrosococcus wardiae TaxID=1814290 RepID=UPI00197D99E7)

HSP 1 Score: 120 bits (302), Expect = 2.790e-31
Identity = 68/132 (51.52%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   13 GRQDSNLLGGLXXXXXXXXXXXQIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            GR +  L+G L    XXXXXXX  GDG GR  AIIGGTL G   G  IGR M   DH       E  P  +T+ W+ P     +QV P  TFQANDGRYCREY A + +G +  Q YGTACR PDG W+I N
Sbjct:  115 GRCNRELIGQLLGGAXXXXXXXXXGDGRGRIIAIIGGTLAGFFLGGEIGRTMDEADHLCVDQALEYAPDGKTIEWRTPGENQRHQVIPHETFQANDGRYCREYTAKSIIGDKTVQTYGTACRQPDGSWRIAN 246          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A1G7QSV7_9HYPH (17 kDa surface antigen n=1 Tax=Limimonas halophila TaxID=1082479 RepID=A0A1G7QSV7_9HYPH)

HSP 1 Score: 119 bits (298), Expect = 6.300e-31
Identity = 59/132 (44.70%), Postives = 75/132 (56.82%), Query Frame = 1
Query:   13 GRQDSNLLGGLXXXXXXXXXXXQIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            GR +   LG +           QIGDG+ R AAIIGG + G + G  IGR M   DH       E  P+ +T+ W+NPD    +QVTP  T+Q   GRY REY A +T+GG   Q YGTACR PDG W+I++
Sbjct:   88 GRCNREALGRILGGAAGAAAGSQIGDGDERIAAIIGGAIAGVLLGGEIGRAMDRADHLCVDQALENAPTGRTVEWRNPDTHRRHQVTPRETYQTESGRYRREYTATSTIGGETVQTYGTACRQPDGAWKIVS 219          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A1Y6BN51_9HYPH (17 kDa surface antigen n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BN51_9HYPH)

HSP 1 Score: 118 bits (296), Expect = 9.760e-31
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 1
Query:   22 DSNLLGGLXXXXXXXXXXXQIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            D+ L+G +           QIG GNG+ AA  GG ++G + G  IGR     D + A    EA  + +T+ W++PD G  Y++TP RTF+  DG YCREY   A+VGGR ++ YGTACR PDG W+++N
Sbjct:   86 DNQLVGQILGGALGGLAGAQIGSGNGKLAATAGGAVLGLLVGGEIGRSFDAADAACAQYALEAGDTGRTVTWRDPDDGVGYRLTPTRTFRRGDG-YCREYTGTASVGGRIQRTYGTACRQPDGSWRLVN 213          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A1Y1Q2P6_9GAMM (17kDa_Anti_2 domain-containing protein n=1 Tax=Thiotrichaceae bacterium IS1 TaxID=1934244 RepID=A0A1Y1Q2P6_9GAMM)

HSP 1 Score: 114 bits (286), Expect = 6.750e-30
Identity = 50/109 (45.87%), Postives = 71/109 (65.14%), Query Frame = 1
Query:   79 QIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIM 405
            Q+G G GRTAAI+ GTL+GA+ G ++G  +   D    +   E TPS  T+ W NP+    YQVTP +TFQ N+G++CR +Q +A V G++E   GTACR  +G WQ++
Sbjct:   47 QVGGGKGRTAAIVAGTLLGALIGGSVGATLDQIDQMKVSQALETTPSGYTVGWANPNTKIGYQVTPTQTFQDNNGQWCRNFQTVAVVEGQQETLQGTACRQTNGYWQLV 155          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A369TDE3_9PROT (Uncharacterized protein n=2 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TDE3_9PROT)

HSP 1 Score: 117 bits (294), Expect = 1.290e-29
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   82 IGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            IG G+G+  A+ GG LIG + G  +GR M   D S      E  PS Q++ W+NPD+   Y+  P RT+Q   GRYCREY   ATV GR +Q YGTACR PDG W++++
Sbjct:  187 IGKGSGQLYAVAGGALIGVLAGGEVGRHMDRLDRSCVNQTLEHVPSGQSVVWRNPDFDARYEAIPQRTYQTAAGRYCREYITTATVAGRSQQVYGTACRQPDGSWELVD 295          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A367W0J5_9PROT (17 kDa surface antigen n=1 Tax=Thalassospira profundimaris TaxID=502049 RepID=A0A367W0J5_9PROT)

HSP 1 Score: 114 bits (284), Expect = 4.220e-29
Identity = 48/106 (45.28%), Postives = 71/106 (66.98%), Query Frame = 1
Query:   91 GNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN 408
            G+GRTAAIIGG ++G + G NIG+ +   D +      +  P  +++ W NPD GT+Y V P R+++  +G YCREY A A +GG++ + YGTACR PDG W+I++
Sbjct:   93 GDGRTAAIIGGAILGMLGGYNIGQSLDQSDRACTGYTLQNVPDGRSVRWLNPDSGTSYNVVPTRSWENANGTYCREYSATADIGGKQAETYGTACRQPDGSWKIVS 198          
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Match: A0A1G8DKI1_9PROT (Surface antigen n=2 Tax=Roseospirillum parvum TaxID=83401 RepID=A0A1G8DKI1_9PROT)

HSP 1 Score: 112 bits (281), Expect = 4.540e-29
Identity = 64/134 (47.76%), Postives = 81/134 (60.45%), Query Frame = 1
Query:   13 GRQDSNLLGGLXXXXXXXXXXXQIGDGNGRTAAIIGGTLIGAMFGSNIGRGMSPYDHS---HAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQANDGRYCREYQALATVGGRREQAYGTACRTPDGDWQIM 405
            G+ D   +G L     XXXXXXQ G G GR AAI GGTL+GA  GS  G+ +   D +   +A       P  +T+AW NPD G +  VTPVR   +  GRYCREY+ +  V GR++ AYGTACR PDG W+I+
Sbjct:   28 GQGDKQTVGTLIGAAAXXXXXXQXGGGTGRYAAIAGGTLLGAWLGSEAGKSLDRADQAALENAQQEAHQAPVGETIAWNNPDSGHSGSVTPVRDGYSQSGRYCREYRTVIEVDGRQQDAYGTACRQPDGSWEII 161          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6016.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0019FD816E7.820e-3550.91Glycine zipper 2TM domain-containing protein n=1 T... [more]
UPI0019064D424.640e-3450.91RT0821/Lpp0805 family surface protein n=1 Tax=Rhod... [more]
A0A4P7C3V2_9GAMM5.180e-3352.73Glycine zipper 2TM domain-containing protein n=1 T... [more]
UPI00197D99E72.790e-3151.52glycine zipper 2TM domain-containing protein n=1 T... [more]
A0A1G7QSV7_9HYPH6.300e-3144.7017 kDa surface antigen n=1 Tax=Limimonas halophila... [more]
A0A1Y6BN51_9HYPH9.760e-3143.4117 kDa surface antigen n=1 Tax=Tistlia consotensis... [more]
A0A1Y1Q2P6_9GAMM6.750e-3045.8717kDa_Anti_2 domain-containing protein n=1 Tax=Thi... [more]
A0A369TDE3_9PROT1.290e-2947.71Uncharacterized protein n=2 Tax=Ferruginivarius se... [more]
A0A367W0J5_9PROT4.220e-2945.2817 kDa surface antigen n=1 Tax=Thalassospira profu... [more]
A0A1G8DKI1_9PROT4.540e-2947.76Surface antigen n=2 Tax=Roseospirillum parvum TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6016contigP-wetherbeei_contig6016:630..1040 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog472759.Nhal_1150
Preferred nameomp
PFAMs17kDa_Anti_2,Gly-zipper_Omp,Rick_17kDa_Anti
Model size411
Max annot lvl2|Bacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.72e-33
EggNOG OGsCOG4520@1|root,COG4520@2|Bacteria
Cds size411
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.880402-CDS-P-wetherbeei_contig6016:629..10401683186882.880402-CDS-P-wetherbeei_contig6016:629..1040Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6016 630..1040 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6016.1.1prot_P-wetherbeei_contig6016.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6016 630..1040 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6016.1.1

>prot_P-wetherbeei_contig6016.1.1 ID=prot_P-wetherbeei_contig6016.1.1|Name=mRNA_P-wetherbeei_contig6016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=137bp
YGGYGRQDSNLLGGLLGGAVGGIAGSQIGDGNGRTAAIIGGTLIGAMFGS
NIGRGMSPYDHSHAASVFEATPSNQTMAWQNPDYGTAYQVTPVRTFQAND
GRYCREYQALATVGGRREQAYGTACRTPDGDWQIMN*
back to top

mRNA from alignment at P-wetherbeei_contig6016:630..1040+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6016.1.1 ID=mRNA_P-wetherbeei_contig6016.1.1|Name=mRNA_P-wetherbeei_contig6016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig6016:630..1040+ (Phaeothamnion wetherbeei SAG_119_79)
TATGGCGGGTATGGCAGGCAGGATTCCAATCTGTTGGGCGGCCTGTTGGG CGGCGCTGTTGGCGGCATCGCCGGTTCGCAGATTGGCGACGGCAATGGAC GCACCGCAGCCATTATCGGCGGCACATTGATTGGCGCCATGTTTGGCAGC AATATTGGCCGGGGTATGAGCCCCTATGATCATAGTCATGCGGCCAGTGT GTTTGAGGCAACCCCCAGCAATCAGACCATGGCATGGCAGAACCCAGATT ATGGGACGGCTTATCAGGTGACGCCTGTGCGCACGTTTCAGGCCAATGAC GGCCGGTATTGCCGCGAATATCAGGCGCTGGCCACCGTCGGCGGCCGCCG GGAACAGGCCTATGGCACCGCCTGCCGCACACCCGACGGCGACTGGCAGA TCATGAATTAG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6016:630..1040+

>mRNA_P-wetherbeei_contig6016.1.1 ID=mRNA_P-wetherbeei_contig6016.1.1|Name=mRNA_P-wetherbeei_contig6016.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=411bp|location=Sequence derived from alignment at P-wetherbeei_contig6016:630..1040+ (Phaeothamnion wetherbeei SAG_119_79)
TATGGCGGGTATGGCAGGCAGGATTCCAATCTGTTGGGCGGCCTGTTGGG
CGGCGCTGTTGGCGGCATCGCCGGTTCGCAGATTGGCGACGGCAATGGAC
GCACCGCAGCCATTATCGGCGGCACATTGATTGGCGCCATGTTTGGCAGC
AATATTGGCCGGGGTATGAGCCCCTATGATCATAGTCATGCGGCCAGTGT
GTTTGAGGCAACCCCCAGCAATCAGACCATGGCATGGCAGAACCCAGATT
ATGGGACGGCTTATCAGGTGACGCCTGTGCGCACGTTTCAGGCCAATGAC
GGCCGGTATTGCCGCGAATATCAGGCGCTGGCCACCGTCGGCGGCCGCCG
GGAACAGGCCTATGGCACCGCCTGCCGCACACCCGACGGCGACTGGCAGA
TCATGAATTAG
back to top