mRNA_P-wetherbeei_contig6010.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6010.1.1
Unique NamemRNA_P-wetherbeei_contig6010.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6010.1.1 vs. uniprot
Match: A0A836CA53_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA53_9STRA)

HSP 1 Score: 115 bits (287), Expect = 3.220e-24
Identity = 65/158 (41.14%), Postives = 79/158 (50.00%), Query Frame = 3 
Query: 1524 GGTASRALVSTVPELREFIRREGAVYGHNECLWADEFAFGVVATRLRLRLLFIDMERKRGEWPYRTLAGSGXXXXXXXXPENXXXXXXXXXXXXXXXXXXXXXXXXXXRGAASAAPAGERCVVLKREGPVGHFVFVATAGGKAVFSTYDMPDVVRQLW 1997
            GG A    V TV +L+E+IRREG+  G  +C+WAD+ AF VVA RLRL +LF+DMER R  WPYR LA                                          A    PA    VVLKREGP GHFV++  A G A F+  D+P+ VR LW
Sbjct:  201 GGEARGPAVQTVEQLQEYIRREGSACGAGDCMWADDAAFAVVAQRLRLGILFVDMERARCAWPYRQLA------------------------------------------ACEGEPA--HYVVLKREGPAGHFVYIGAASGAAAFALRDLPNAVRALW 314
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BLAST of mRNA_P-wetherbeei_contig6010.1.1 vs. uniprot
Match: A0A6H5L3H2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H2_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.070e-18
Identity = 51/114 (44.74%), Postives = 72/114 (63.16%), Query Frame = 3 
Query:  591 GREDVTWYCDACE-SRHRASALAALEPFRRVHGFRVHAVPKDGDCFYNAVRTALGAA---------GNGFGPRSP-TVAEMRNWVAEAAGEEQLRFYQAHAQAHANECWLDFVR 899
            G ++V+W C AC  ++H  ++ +A+EP +R HGF+VH VP DGDCF+++++ AL AA         G   G  S  TV +MR WVAE  G++QL FY   A A+  + WLDFVR
Sbjct:  261 GHQNVSWTCRACGGAKHHLTSRSAMEPLQRAHGFKVHRVPNDGDCFFSSIKAALPAAELARGDEGGGAAAGAGSALTVRQMREWVAEEMGQDQLDFYILQAGANPEDRWLDFVR 374
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BLAST of mRNA_P-wetherbeei_contig6010.1.1 vs. uniprot
Match: D8LS81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS81_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 8.010e-13
Identity = 58/181 (32.04%), Postives = 76/181 (41.99%), Query Frame = 3 
Query: 1545 LVSTVPELREFIRREGAVYGHNECLWADEFAFGVVATRLRLRLLFIDMERKRGEWPYRTLAGSGXXXXXXXXPENXXXXXXXXXXXXXXXXXXXXXXXXXXRGAASAAPAGERCVVLKREGPVGHFVFVATAG----------------------------GKAVFSTYDMPDVVRQLWRL 2003
            +V TV ELR F+R EG+  GH  C+WAD  A  VV+ RL++ +LF+DMER++  WPYR LA +                                          S     ER VVLKRE    HFV + T                              G+A FS  ++PDVVR+LW+L
Sbjct:  347 VVETVEELRRFVRLEGSDVGHGNCMWADTHAHHVVSRRLKITILFVDMEREKRAWPYRVLARTVTD---------------------------------------SDDGEDERFVVLKRE--PSHFVLLETVPSPEDSDGAVGSDSGXXXXXXXXXXKGGRGQACFSRSELPDVVRRLWQL 486
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6010.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836CA53_9STRA3.220e-2441.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5L3H2_9PHAE2.070e-1844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS81_ECTSI8.010e-1332.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6010contigP-wetherbeei_contig6010:2..3268 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2390
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_004490.1
Cds size1974
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6010.1.1prot_P-wetherbeei_contig6010.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6010 37..2887 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.5379443-UTR-P-wetherbeei_contig6010:1..361683186882.5379443-UTR-P-wetherbeei_contig6010:1..36Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6010 2..36 +
1683186882.6004314-UTR-P-wetherbeei_contig6010:2887..32681683186882.6004314-UTR-P-wetherbeei_contig6010:2887..3268Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6010 2888..3268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.5496163-CDS-P-wetherbeei_contig6010:36..2131683186882.5496163-CDS-P-wetherbeei_contig6010:36..213Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6010 37..213 +
1683186882.560889-CDS-P-wetherbeei_contig6010:385..8901683186882.560889-CDS-P-wetherbeei_contig6010:385..890Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6010 386..890 +
1683186882.5725584-CDS-P-wetherbeei_contig6010:1347..14421683186882.5725584-CDS-P-wetherbeei_contig6010:1347..1442Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6010 1348..1442 +
1683186882.5841918-CDS-P-wetherbeei_contig6010:1690..28871683186882.5841918-CDS-P-wetherbeei_contig6010:1690..2887Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6010 1691..2887 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6010.1.1

>prot_P-wetherbeei_contig6010.1.1 ID=prot_P-wetherbeei_contig6010.1.1|Name=mRNA_P-wetherbeei_contig6010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=658bp
MRRSLAPSQVAARRLTAPLIHEVSKVQGSTRSAPKESSSKEATSAQTATR
EKVASTVQEAEPVPVASTVKYESKRGCILRSVRKEHVAPLCRTPRRERAR
DGGTKIANNAALSSCDADAIEASGAATVRAPTTNVCAAAAIAAAKAVVSI
AGASVAVETAAEKENAPSSEAPTLSHAQEAQPQGGGREDVTWYCDACESR
HRASALAALEPFRRVHGFRVHAVPKDGDCFYNAVRTALGAAGNGFGPRSP
TVAEMRNWVAEAAGEEQLRFYQAHAQAHANECWLDFVRGGGGSEAAGDDS
DSSSGGGSSSIGGSSSGGGSSSVGGSSSEGGAGGASSASGSRREATSSNG
GHITSADAGGNTNADGDGSGYGKRGAGDSGRSGGRNGRPVRNCCAAVAFD
GACKNPADLGSTADAPTSPHAKRRRSAAADAPAAAMAALGAAAPAAAASA
KAVAGVEAPEEVAPCPATANPQRPRHWRRSCVVGDGDDSSGSGAGSGGTA
SRALVSTVPELREFIRREGAVYGHNECLWADEFAFGVVATRLRLRLLFID
MERKRGEWPYRTLAGSGGGGDGGGAPENSGRNGGAAADSAGAAAKSVAAA
GGAGRGAASAAPAGERCVVLKREGPVGHFVFVATAGGKAVFSTYDMPDVV
RQLWRLA*
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mRNA from alignment at P-wetherbeei_contig6010:2..3268+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6010.1.1 ID=mRNA_P-wetherbeei_contig6010.1.1|Name=mRNA_P-wetherbeei_contig6010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3267bp|location=Sequence derived from alignment at P-wetherbeei_contig6010:2..3268+ (Phaeothamnion wetherbeei SAG_119_79)
TTTCAGAACGGGATTTTCGGCGCCATTGTGAAACCATGAGGCGCAGCCTT
GCGCCGTCGCAGGTGGCAGCCCGTAGGCTGACCGCGCCGCTCATCCACGA
AGTCTCTAAAGTTCAAGGATCTACAAGGTCTGCTCCAAAAGAATCATCTT
CGAAAGAGGCAACGAGCGCTCAAACCGCGACGAGGGAGAAGGTTGCCAGC
ACGGTGCAAGAGGTGAGGTGCCTCACAGGCTGACTGCCGACACCAAAGAA
CCTTCGTATTGTCACTCCCGCGTTATTGTCAACCGCCCCTGTACCATCTT
GTCATTCGCTTGCTCGTCTCCTACACGCATACCGCAAAGCTAAGCAAAAA
CAACCGTTTTGGGTTGACGTTTACCCGCACGCAGGCCGAACCTGTTCCTG
TGGCCTCAACCGTCAAATACGAGAGCAAACGGGGTTGCATCTTGCGATCT
GTGCGCAAGGAGCACGTGGCGCCGCTCTGCCGAACGCCGAGACGAGAGCG
GGCCCGTGACGGGGGCACGAAGATTGCAAACAATGCAGCGTTGAGCTCCT
GCGACGCCGACGCCATCGAGGCCTCTGGCGCCGCCACAGTCCGTGCCCCC
ACCACCAACGTCTGTGCGGCCGCCGCCATCGCCGCCGCCAAAGCCGTCGT
CAGCATCGCCGGCGCTTCCGTCGCCGTCGAAACCGCGGCAGAGAAGGAAA
ACGCTCCTTCGTCCGAGGCGCCTACTCTTTCACATGCTCAGGAGGCGCAG
CCGCAGGGCGGCGGACGCGAGGACGTTACTTGGTACTGCGATGCGTGCGA
ATCGCGGCACCGCGCTTCGGCTCTCGCTGCGCTGGAGCCCTTTCGGCGCG
TCCACGGCTTTCGTGTCCATGCGGTGCCCAAGGACGGCGGTAAGATTCCC
GTATTTTACCTCGAGTTGTATGCCGTCGCTGAATCCGATAGTCCTGCCAG
GCTCAGCTGCTTGCCGGTTCCAGTGTTCTGAAGTTTCCAAGCTTGAAAAG
GTTGGCGCCGTATGCATCGAATATCTGCTATGAAGACCGGCTGAGGCGGG
CGCCCGGGGGGGGGGGGGGGGGGTTGGGTTTTTTTGAATTCTCGTTGTAA
ATTCGTTTTTTTGGAGTTTTAANNNNNNNNNNGAGTGGGGGTGCGGGCTG
GGTGGGGTTGTGGCGGGGGTGGGTGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGCTTTGAGCTTTTTTGAATTCTCGTTGCAAATTCGTATCTT
TGGATGTCTAAAGGAATCCAGCGTGTTAACCCCGTCTCGCGTCATTTGCC
TCTGCGCTTTTGCGCTCATCGCTCCCTCGTGCTGCTTTCTCTGCAGACTG
CTTTTACAACGCTGTCCGAACGGCGCTCGGCGCCGCGGGGAACGGTTTTG
GGCCGCGGTCGCCAACGGTGGCGGAGATGCGCAACTGGGTGGTGAGTTGC
CTCTCGATGGTGCCTCATTTCGGAAGGCTTGGATCCCTCAGCGCAATTTC
CAGGCGCTGTAGCGCTTCTTTCTCATGGGATGCGACTGTAATAAAGAGGA
TTTGCCTTCCCAAGGATGTTTCAATATTCCATCAAACTTCTGCTGGTTGC
GCCGATTAAGCCTCTTGAAGTTCGGGCGATGGATGGCTCAGTTGTCGTCC
ATCAAACGGCCGACTCCGGTCTTATCTCAATTTCTTCAGGCGGAGGCAGC
GGGCGAGGAGCAGCTGCGCTTCTATCAGGCGCACGCGCAAGCCCATGCCA
ACGAGTGTTGGCTAGACTTTGTCCGGGGCGGCGGCGGCAGCGAAGCAGCG
GGCGACGACAGCGACAGCAGCAGCGGTGGCGGCAGCAGCAGCATCGGCGG
CAGCAGCAGCGGCGGCGGCAGCAGCAGCGTCGGCGGCAGCAGCAGCGAAG
GAGGCGCCGGCGGCGCCAGCAGCGCCAGCGGCAGCCGCAGGGAAGCTACC
AGCAGCAACGGTGGCCACATCACCAGCGCTGATGCTGGCGGCAACACCAA
CGCTGACGGTGATGGCAGCGGTTACGGCAAACGTGGTGCCGGTGACAGTG
GCCGCAGCGGCGGCCGCAACGGTCGCCCCGTTCGCAATTGCTGTGCAGCT
GTTGCCTTTGACGGCGCCTGCAAGAATCCCGCCGATCTAGGCAGCACCGC
CGACGCGCCGACCTCTCCGCACGCCAAACGCCGTCGGAGTGCCGCGGCAG
ATGCTCCAGCAGCAGCAATGGCGGCGCTCGGAGCAGCAGCGCCTGCAGCA
GCCGCATCGGCGAAAGCGGTGGCGGGTGTTGAGGCGCCCGAGGAAGTGGC
GCCGTGTCCGGCGACAGCGAACCCGCAACGGCCGCGGCACTGGCGGCGAA
GCTGTGTCGTGGGTGACGGCGACGACAGCAGCGGCAGCGGCGCGGGATCC
GGCGGCACGGCCTCGCGTGCGCTGGTGTCTACCGTCCCGGAGCTGCGGGA
GTTCATCCGGCGGGAGGGTGCCGTGTACGGCCACAACGAGTGCCTCTGGG
CGGATGAGTTTGCCTTCGGCGTGGTGGCGACGCGGCTGCGGCTCCGGCTG
CTCTTCATCGACATGGAGCGCAAGCGGGGCGAATGGCCCTACCGTACGCT
GGCCGGCAGCGGTGGCGGCGGCGATGGCGGCGGCGCGCCGGAAAATAGCG
GCCGTAATGGCGGGGCTGCGGCGGATTCCGCCGGCGCTGCTGCGAAATCG
GTGGCAGCGGCAGGAGGTGCCGGGCGGGGTGCCGCGTCGGCGGCTCCAGC
TGGGGAGCGCTGCGTGGTATTGAAGCGTGAAGGTCCCGTGGGCCACTTTG
TGTTTGTGGCGACCGCCGGAGGCAAGGCCGTCTTCAGCACATACGATATG
CCTGACGTCGTGCGGCAGCTATGGCGTCTTGCCTGAATTATTATGCTATG
GTGGGGTTTGTTGAGTTGCGGTTGTTTATCTCTTTTGTCTCCTTGTGGGA
GGTCCCCCGCGTGGCGGCGGCAGGGAATTAAGATTTGCGAGCCGCCGGCA
GCGCTGCATTGGACACCAAGAACATGAGTTGTCTATGAGGAAAGGAGAGC
ACACACTGCACAGGAGAAAGAATACTTGTATTGGGAGGCTAGATGTTGGC
CGCGCCAAGATGCAGTTGCCGCAGTAGGCCCAAAAGGCCGCGCTGCCTTT
GACCGCGAGGAACGGGGGCGGGTTGGCACGACAGATATAAAGAAAACGGT
ATCGCTGGCTACGCGGCGCCGCGTTGTAAAAATGCAACAACCAGTTCATC
GATGGACTGGACAAAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6010:2..3268+

>mRNA_P-wetherbeei_contig6010.1.1 ID=mRNA_P-wetherbeei_contig6010.1.1|Name=mRNA_P-wetherbeei_contig6010.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1974bp|location=Sequence derived from alignment at P-wetherbeei_contig6010:2..3268+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGGCGCAGCCTTGCGCCGTCGCAGGTGGCAGCCCGTAGGCTGACCGC
GCCGCTCATCCACGAAGTCTCTAAAGTTCAAGGATCTACAAGGTCTGCTC
CAAAAGAATCATCTTCGAAAGAGGCAACGAGCGCTCAAACCGCGACGAGG
GAGAAGGTTGCCAGCACGGTGCAAGAGGCCGAACCTGTTCCTGTGGCCTC
AACCGTCAAATACGAGAGCAAACGGGGTTGCATCTTGCGATCTGTGCGCA
AGGAGCACGTGGCGCCGCTCTGCCGAACGCCGAGACGAGAGCGGGCCCGT
GACGGGGGCACGAAGATTGCAAACAATGCAGCGTTGAGCTCCTGCGACGC
CGACGCCATCGAGGCCTCTGGCGCCGCCACAGTCCGTGCCCCCACCACCA
ACGTCTGTGCGGCCGCCGCCATCGCCGCCGCCAAAGCCGTCGTCAGCATC
GCCGGCGCTTCCGTCGCCGTCGAAACCGCGGCAGAGAAGGAAAACGCTCC
TTCGTCCGAGGCGCCTACTCTTTCACATGCTCAGGAGGCGCAGCCGCAGG
GCGGCGGACGCGAGGACGTTACTTGGTACTGCGATGCGTGCGAATCGCGG
CACCGCGCTTCGGCTCTCGCTGCGCTGGAGCCCTTTCGGCGCGTCCACGG
CTTTCGTGTCCATGCGGTGCCCAAGGACGGCGACTGCTTTTACAACGCTG
TCCGAACGGCGCTCGGCGCCGCGGGGAACGGTTTTGGGCCGCGGTCGCCA
ACGGTGGCGGAGATGCGCAACTGGGTGGCGGAGGCAGCGGGCGAGGAGCA
GCTGCGCTTCTATCAGGCGCACGCGCAAGCCCATGCCAACGAGTGTTGGC
TAGACTTTGTCCGGGGCGGCGGCGGCAGCGAAGCAGCGGGCGACGACAGC
GACAGCAGCAGCGGTGGCGGCAGCAGCAGCATCGGCGGCAGCAGCAGCGG
CGGCGGCAGCAGCAGCGTCGGCGGCAGCAGCAGCGAAGGAGGCGCCGGCG
GCGCCAGCAGCGCCAGCGGCAGCCGCAGGGAAGCTACCAGCAGCAACGGT
GGCCACATCACCAGCGCTGATGCTGGCGGCAACACCAACGCTGACGGTGA
TGGCAGCGGTTACGGCAAACGTGGTGCCGGTGACAGTGGCCGCAGCGGCG
GCCGCAACGGTCGCCCCGTTCGCAATTGCTGTGCAGCTGTTGCCTTTGAC
GGCGCCTGCAAGAATCCCGCCGATCTAGGCAGCACCGCCGACGCGCCGAC
CTCTCCGCACGCCAAACGCCGTCGGAGTGCCGCGGCAGATGCTCCAGCAG
CAGCAATGGCGGCGCTCGGAGCAGCAGCGCCTGCAGCAGCCGCATCGGCG
AAAGCGGTGGCGGGTGTTGAGGCGCCCGAGGAAGTGGCGCCGTGTCCGGC
GACAGCGAACCCGCAACGGCCGCGGCACTGGCGGCGAAGCTGTGTCGTGG
GTGACGGCGACGACAGCAGCGGCAGCGGCGCGGGATCCGGCGGCACGGCC
TCGCGTGCGCTGGTGTCTACCGTCCCGGAGCTGCGGGAGTTCATCCGGCG
GGAGGGTGCCGTGTACGGCCACAACGAGTGCCTCTGGGCGGATGAGTTTG
CCTTCGGCGTGGTGGCGACGCGGCTGCGGCTCCGGCTGCTCTTCATCGAC
ATGGAGCGCAAGCGGGGCGAATGGCCCTACCGTACGCTGGCCGGCAGCGG
TGGCGGCGGCGATGGCGGCGGCGCGCCGGAAAATAGCGGCCGTAATGGCG
GGGCTGCGGCGGATTCCGCCGGCGCTGCTGCGAAATCGGTGGCAGCGGCA
GGAGGTGCCGGGCGGGGTGCCGCGTCGGCGGCTCCAGCTGGGGAGCGCTG
CGTGGTATTGAAGCGTGAAGGTCCCGTGGGCCACTTTGTGTTTGTGGCGA
CCGCCGGAGGCAAGGCCGTCTTCAGCACATACGATATGCCTGACGTCGTG
CGGCAGCTATGGCGTCTTGCCTGA
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