mRNA_P-wetherbeei_contig6009.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6009.1.1
Unique NamemRNA_P-wetherbeei_contig6009.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 4.740e-22
Identity = 106/357 (29.69%), Postives = 151/357 (42.30%), Query Frame = 1
Query:    1 RSVTFFFAGSMRHRPERANLAVLQNAVEGACIQVAKSSHV----TRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFAD-AIPYERFAAFVPDADFESREAIAAMARRLLAWPAARLDAMHAELMRHRDRLVVARRSGDNASFAELAPSPGLAEEFLRAAARLAAPDRR---------WSCRPSDDGPFNARTAARVAAAVFPAEGAGRRDEWFGGGAATVVNFGRRLLLCDVPGAGTAPLAPFFLQ----PPLVAADGVYRGSGRFAAGFAVAEEGAAAXXXXXRAPAATAGMVARTLPVDDGAAMAEIY---GLGWVRAVVARDPMTRLLAIFLALS 1008
            R + FFF G+ R RPER NL V+    EG+ + +          + +Y   I  +RFC  PRGDT SSRR+FDAVAAGC P+V E       LPF++  + Y  FA  V    F +RE +  + +  L+   A ++ +     R    L+     G      ++ P  G A +F+RA+  LA              W+C   D        A R  A + P  GA R  +W      T+VN  R LL C  P  G+        +    P    ++       R A+G  +                         L   DG  M EIY   G GW++  + RDP+TRLL+ +L L+
Sbjct:  341 RDIPFFFVGTARGRPERQNLDVVTGMAEGSVMMLGDHQSDWGMNSTQYAAHIARSRFCFCPRGDTESSRRIFDAVAAGCTPIVTEASVAV--LPFSEHVLNYSDFAVVVDPDAFTTRERVTKVVQDALSRSEAEVEQLREGGRRGISALLYGVTMGKE--IGDMRPFLGTATKFVRASYALAGGGGTEGEGRSADMWTCNRYDPKGEEVDAAPRTTAKLPPPAGATR--QWLAE-TETIVNEERSLLFCAPPNTGSLQFRMLAKRMQGLPHWAVSNDRSLVFDREASGLEL-------------------------LDATDGHLMEEIYQENGSGWIKIGLVRDPVTRLLSAYLDLA 665          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE)

HSP 1 Score: 95.1 bits (235), Expect = 1.290e-18
Identity = 62/176 (35.23%), Postives = 92/176 (52.27%), Query Frame = 1
Query:    1 RSVTFFFAGSMRHRPERANLAVLQNAVEGACIQVAKSSHV----TRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFAD-AIPYERFAAFVPDADFESREAIAAMARRLLAWPAARLDAMHAELMRHRDRLVVARRSGDNASFAELAPSPGLAEEFLR 513
            R + FFF G+ RHRPER NL V+ +  +G+ + +   +      +  Y   +  +RFC  PRGDT SSRRLFDA+AAGC P+V E       LPF+  A+ Y  FA  V  A F +RE++  + R +L+  +  L+ +     R  + L+     G   S  ++ P  G A  F +
Sbjct:  135 RDIPFFFVGTARHRPERKNLDVVADIAKGSVVILDDLAWEWGMNSTEYAEHMARSRFCFSPRGDTESSRRLFDAIAAGCTPIVTEATVAV--LPFSQTALNYSDFAVVVDSAGFRTRESVKGIVREVLSRTSVELEELQESARRAANGLLYGITEGPELS--DVRPYFGTATNFAK 306          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.400e-12
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 RSVTFFFAGSMRHRPERANLAVLQNAVEGACIQV----AKSSHVTRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPE 243
            R + FFF G+ R RPER NL V+ +  +G+ + +    ++    + +Y   +  +RFC  PRGDT SSRRLFDA+AAGC P+V E
Sbjct:  144 RDIPFFFVGTARGRPERENLDVVADIAKGSVVILDNLPSRWGMNSTQYAEHMARSRFCFSPRGDTESSRRLFDAIAAGCTPIVTE 228          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.060e-11
Identity = 38/85 (44.71%), Postives = 54/85 (63.53%), Query Frame = 1
Query:    1 RSVTFFFAGSMRHRPERANLAVLQNAVEGACIQV----AKSSHVTRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPE 243
            R + FFF G+ R RPER NL V+ +  +G+ + +    ++    + +Y   +  +RFC  PRGDT SSRRLFDA+AAGC P+V E
Sbjct:  107 RDIPFFFVGTARGRPERENLDVVADIAKGSVVILDNLPSRWGMNSTQYAEHMARSRFCFSPRGDTESSRRLFDAIAAGCTPIVTE 191          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A7S0LSU7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LSU7_9EUKA)

HSP 1 Score: 66.6 bits (161), Expect = 4.480e-10
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1
Query:  124 RRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVPDADFESREAIA 348
            +++   + S++FCL  RGD+P SRR F+ +AAGC+PVV   L      PF   +PY  F  F+P+ADF +  ++A
Sbjct:   37 QQFADTLLSSQFCLHIRGDSPGSRRFFEILAAGCLPVVVADLWLNTSAPFTAEVPYCDFVVFIPEADFVANASLA 111          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A1Y1IG28_KLENI (Exostosin domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IG28_KLENI)

HSP 1 Score: 68.2 bits (165), Expect = 5.740e-9
Identity = 42/109 (38.53%), Postives = 59/109 (54.13%), Query Frame = 1
Query:    1 RSVTFFFAGSMRHRPE---RANLAVLQNAVEGACIQVAKSSHV-TRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVP 315
            R    FF G ++ +     R  L  +     G  +Q  + S V       ++  +RFCL+P GDTPSS RLFDA+A+ C+PVV   +  + +LPF D + Y RFA FVP
Sbjct:  347 RKSLLFFQGQLQRKAGGAVRQELLGVLGRETGVVMQPGRPSSVGVADAATRMRDSRFCLMPAGDTPSSCRLFDAIASHCVPVV---VSDQLELPFEDVLDYTRFAIFVP 452          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A7S3WY46_9SPIT (Hypothetical protein n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WY46_9SPIT)

HSP 1 Score: 65.5 bits (158), Expect = 1.750e-8
Identity = 55/177 (31.07%), Postives = 88/177 (49.72%), Query Frame = 1
Query:    1 RSVTFFFAG----------SMRHRPERANLAVLQNAVEGACIQVAKSSHVTRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVPDADFESREAIAAMARRLLAWPAARLDAMHAELMRHRDRLV----VARRSGDNASFAELAPSP 489
            RS+  FF G          S+R R  +A   +    +E +  Q          Y+ ++ SA+FCL PRGDT SS+R ++++AAGCIPV+   +  +  LPF+  + ++ F+  + +   E+     A+ +RL   P AR+ AM A L R R   +     +RRS  +A   E+   P
Sbjct:  107 RSLLLFFRGHLPKGYIESASIRRRMLQALRGLPGVLIEASTSQPGAVYEPHSLYLKKMLSAKFCLTPRGDTSSSKRTYESIAAGCIPVI---IADDLRLPFSRKLNWDSFSIRISEK--EALRDPPAIVQRLHNLPPARVVAMQAALARARPNFLWHLDPSRRSAVDAILEEICDGP 278          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A7I8J4L1_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8J4L1_SPIIN)

HSP 1 Score: 65.5 bits (158), Expect = 2.340e-8
Identity = 32/61 (52.46%), Postives = 40/61 (65.57%), Query Frame = 1
Query:  142 ITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVPDAD 324
            + +ARFCL   GDTPSS RLFDA+A  C+PVV   +  + +LPF D + Y  F  FVP AD
Sbjct:  172 MATARFCLTIAGDTPSSNRLFDAIARRCVPVV---ISNDLELPFEDVLDYAEFCVFVPAAD 229          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A822Z086_NELNU (Exostosin domain-containing protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822Z086_NELNU)

HSP 1 Score: 63.2 bits (152), Expect = 4.100e-8
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 1
Query:  133 VGQ-ITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVPDAD 324
            VGQ +TS++FCL   GDTPSS RLFDA+A+ C+PV+   +  E +LP+ D + Y  F  FV ++D
Sbjct:   60 VGQGMTSSKFCLNIAGDTPSSNRLFDAIASHCVPVI---ISDEIELPYEDVLDYSEFCIFVRESD 121          
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Match: A0A7R9YJK9_DIALT (Hypothetical protein (Fragment) n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YJK9_DIALT)

HSP 1 Score: 64.3 bits (155), Expect = 4.160e-8
Identity = 40/85 (47.06%), Postives = 48/85 (56.47%), Query Frame = 1
Query:   67 LQNAVEGACIQVAKSSHVTRRYVGQITSARFCLVPRGDTPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAI--PYERFAAFVP 315
            L  A EG    V +    T  Y  +I SA+FCLVPRGDT +SRR +DAV AGCIP+V   L     LPF + +   YER    VP
Sbjct:  159 LLKATEG----VPREGRSTAEYAAEIQSAQFCLVPRGDTLTSRRFYDAVLAGCIPIV---LSDGMPLPFREELHAQYERAVVSVP 236          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ23_ECTSI4.740e-2229.69Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KWD0_9PHAE1.290e-1835.23Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LR87_9PHAE1.400e-1244.71Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE1.060e-1144.71Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A7S0LSU7_9EUKA4.480e-1041.33Hypothetical protein (Fragment) n=1 Tax=Coccolithu... [more]
A0A1Y1IG28_KLENI5.740e-938.53Exostosin domain-containing protein n=1 Tax=Klebso... [more]
A0A7S3WY46_9SPIT1.750e-831.07Hypothetical protein n=1 Tax=Strombidinopsis acumi... [more]
A0A7I8J4L1_SPIIN2.340e-852.46Hypothetical protein n=1 Tax=Spirodela intermedia ... [more]
A0A822Z086_NELNU4.100e-849.23Exostosin domain-containing protein n=1 Tax=Nelumb... [more]
A0A7R9YJK9_DIALT4.160e-847.06Hypothetical protein (Fragment) n=1 Tax=Diacronema... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6009contigP-wetherbeei_contig6009:124..1524 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LQ23
PFAMsExostosin
Model size1008
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue5.05e-19
EggNOG OGsKOG1021@1|root,KOG1021@2759|Eukaryota
Descriptionmacromolecule glycosylation
Cds size978
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.3622496-UTR-P-wetherbeei_contig6009:123..1531683186882.3622496-UTR-P-wetherbeei_contig6009:123..153Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6009 124..153 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.3756719-CDS-P-wetherbeei_contig6009:153..1951683186882.3756719-CDS-P-wetherbeei_contig6009:153..195Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6009 154..195 +
1683186882.384682-CDS-P-wetherbeei_contig6009:588..15241683186882.384682-CDS-P-wetherbeei_contig6009:588..1524Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6009 589..1524 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6009.1.1prot_P-wetherbeei_contig6009.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6009 154..1524 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6009.1.1

>prot_P-wetherbeei_contig6009.1.1 ID=prot_P-wetherbeei_contig6009.1.1|Name=mRNA_P-wetherbeei_contig6009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=326bp
MRHRPERANLAVLQNAVEGACIQVAKSSHVTRRYVGQITSARFCLVPRGD
TPSSRRLFDAVAAGCIPVVPEVLRREDDLPFADAIPYERFAAFVPDADFE
SREAIAAMARRLLAWPAARLDAMHAELMRHRDRLVVARRSGDNASFAELA
PSPGLAEEFLRAAARLAAPDRRWSCRPSDDGPFNARTAARVAAAVFPAEG
AGRRDEWFGGGAATVVNFGRRLLLCDVPGAGTAPLAPFFLQPPLVAADGV
YRGSGRFAAGFAVAEEGAAAAEGAARAPAATAGMVARTLPVDDGAAMAEI
YGLGWVRAVVARDPMTRLLAIFLALS
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mRNA from alignment at P-wetherbeei_contig6009:124..1524+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6009.1.1 ID=mRNA_P-wetherbeei_contig6009.1.1|Name=mRNA_P-wetherbeei_contig6009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1401bp|location=Sequence derived from alignment at P-wetherbeei_contig6009:124..1524+ (Phaeothamnion wetherbeei SAG_119_79)
AGGTCGGTGACGTTCTTCTTCGCCGGCTCGATGCGACACCGCCCGGAGCG CGCCAACCTCGCCGTCCTCCAGGTGCGGGTCCCTCCAATTTTTGGCTGAG TGCGGTCGCACTCATTTTCCCGTGTCAGATTTCTCATTACAAGAGCCTTC TTTCCCACTCCTTTTTCCTCAGATCGTGCGGCACAGGTGCCCATTCTTTC TTTTTTTGGTTCTAAATGGTTGAAATCTATGTTTTTTGCGCTTTTCGCAT CTTCTGCCTGGTGAAGTTACGTCGCCGGCGTTGGATGCATGAGAGCTGGG CTTTCTTTGCGGCCGACTGTTGCAGCGTCCTCCTGCGGCTCCCTTCAGCG TTCCTTGCAACTGTTCACCAGACGACGCGACCGGCAATAACAGCGAAACA ATGCTCGCCCAACGGATCCAACAAATCCAACAATCCAACGTCCGTCCTTC TCACGTACAAAGCAGAACGCCGTGGAGGGCGCGTGCATCCAGGTAGCAAA GAGCAGCCACGTGACCCGCCGCTACGTCGGCCAGATCACCTCTGCCCGTT TCTGCCTGGTGCCGCGCGGCGACACGCCTTCGAGCCGCCGCCTCTTCGAC GCCGTCGCTGCCGGCTGCATCCCGGTTGTGCCGGAGGTGCTGCGGCGCGA GGACGACCTGCCGTTCGCCGACGCCATCCCTTATGAGCGCTTTGCGGCCT TTGTGCCTGACGCAGACTTTGAGTCGCGCGAGGCGATTGCAGCGATGGCG CGGCGGTTACTGGCGTGGCCAGCGGCAAGGCTGGACGCGATGCACGCGGA GCTGATGCGGCATCGGGACCGCCTCGTGGTGGCGCGGCGCAGCGGCGACA ATGCCTCCTTCGCAGAGCTGGCGCCATCACCCGGCCTGGCAGAAGAATTC TTGCGCGCAGCGGCGCGGCTGGCGGCGCCGGACCGGCGGTGGTCGTGCCG GCCGTCGGACGACGGGCCGTTCAACGCCCGCACTGCGGCACGCGTGGCAG CGGCGGTGTTTCCCGCAGAAGGCGCCGGTCGACGCGATGAGTGGTTTGGT GGCGGCGCAGCCACCGTCGTGAATTTCGGCCGCCGGCTACTCCTGTGCGA CGTTCCGGGCGCCGGCACCGCGCCGCTGGCCCCCTTCTTCCTGCAGCCAC CCCTGGTGGCGGCCGACGGCGTATATCGCGGTAGTGGTCGTTTTGCGGCC GGATTTGCTGTAGCGGAGGAAGGGGCGGCGGCGGCTGAAGGAGCCGCGAG GGCGCCGGCAGCAACGGCAGGGATGGTCGCCAGGACGCTGCCGGTCGACG ATGGGGCTGCCATGGCGGAGATTTACGGGTTGGGGTGGGTCCGAGCCGTT GTGGCGCGCGACCCCATGACGCGTCTCCTCGCCATCTTTCTCGCGCTGAG C
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6009:124..1524+

>mRNA_P-wetherbeei_contig6009.1.1 ID=mRNA_P-wetherbeei_contig6009.1.1|Name=mRNA_P-wetherbeei_contig6009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=978bp|location=Sequence derived from alignment at P-wetherbeei_contig6009:124..1524+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGACACCGCCCGGAGCGCGCCAACCTCGCCGTCCTCCAGAACGCCGT
GGAGGGCGCGTGCATCCAGGTAGCAAAGAGCAGCCACGTGACCCGCCGCT
ACGTCGGCCAGATCACCTCTGCCCGTTTCTGCCTGGTGCCGCGCGGCGAC
ACGCCTTCGAGCCGCCGCCTCTTCGACGCCGTCGCTGCCGGCTGCATCCC
GGTTGTGCCGGAGGTGCTGCGGCGCGAGGACGACCTGCCGTTCGCCGACG
CCATCCCTTATGAGCGCTTTGCGGCCTTTGTGCCTGACGCAGACTTTGAG
TCGCGCGAGGCGATTGCAGCGATGGCGCGGCGGTTACTGGCGTGGCCAGC
GGCAAGGCTGGACGCGATGCACGCGGAGCTGATGCGGCATCGGGACCGCC
TCGTGGTGGCGCGGCGCAGCGGCGACAATGCCTCCTTCGCAGAGCTGGCG
CCATCACCCGGCCTGGCAGAAGAATTCTTGCGCGCAGCGGCGCGGCTGGC
GGCGCCGGACCGGCGGTGGTCGTGCCGGCCGTCGGACGACGGGCCGTTCA
ACGCCCGCACTGCGGCACGCGTGGCAGCGGCGGTGTTTCCCGCAGAAGGC
GCCGGTCGACGCGATGAGTGGTTTGGTGGCGGCGCAGCCACCGTCGTGAA
TTTCGGCCGCCGGCTACTCCTGTGCGACGTTCCGGGCGCCGGCACCGCGC
CGCTGGCCCCCTTCTTCCTGCAGCCACCCCTGGTGGCGGCCGACGGCGTA
TATCGCGGTAGTGGTCGTTTTGCGGCCGGATTTGCTGTAGCGGAGGAAGG
GGCGGCGGCGGCTGAAGGAGCCGCGAGGGCGCCGGCAGCAACGGCAGGGA
TGGTCGCCAGGACGCTGCCGGTCGACGATGGGGCTGCCATGGCGGAGATT
TACGGGTTGGGGTGGGTCCGAGCCGTTGTGGCGCGCGACCCCATGACGCG
TCTCCTCGCCATCTTTCTCGCGCTGAGC
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