mRNA_P-wetherbeei_contig6006.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6006.1.1
Unique NamemRNA_P-wetherbeei_contig6006.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig6006.1.1 vs. uniprot
Match: D8LB26_ECTSI (ELMO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB26_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 6.940e-12
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 1 
Query:   19 IKFLVQGDPGDPETGATATVDVKDQDFRGTALTLAKLRDLFPFEGKWHFRLRLADPAGRSSYVWLDLTRE 228
            + +++QGD  DPETG  ++  V D+      LTL +LR++FPFEG +HFRL++ D  G S Y W+DLT +
Sbjct:    7 VCYVIQGDDDDPETGVQSSFRV-DRPTPPRTLTLFRLREMFPFEGTFHFRLKVPDANGLSDYCWVDLTTD 75
[Close]
BLAST of mRNA_P-wetherbeei_contig6006.1.1 vs. uniprot
Match: A0A835YT59_9STRA (ELMO/CED-12 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT59_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 6.170e-11
Identity = 30/70 (42.86%), Postives = 51/70 (72.86%), Query Frame = 1 
Query:   19 IKFLVQGDPGDPETGATATVDVKDQDFRGTALTLAKLRDLFPFEGKWHFRLRLADPAGRSSYVWLDLTRE 228
            + +++QG+   PETG  ++++++ +      LTLA+L+DLFP+ G +HFRL++AD  G + +VWLDLT+E
Sbjct:    3 LHYVLQGEYDAPETGVESSLELQQEQD----LTLAQLKDLFPYCGTFHFRLKVADNVGTAPHVWLDLTQE 68
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6006.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB26_ECTSI6.940e-1245.71ELMO domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A835YT59_9STRA6.170e-1142.86ELMO/CED-12 family-domain-containing protein n=1 T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6006contigP-wetherbeei_contig6006:119..349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LB26
PFAMsELMO_CED12
Model size231
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.69e-13
EggNOG OGsKOG2998@1|root,KOG2998@2759|Eukaryota
DescriptionELMO domain-containing protein
Cds size225
COG categoryZ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.1936028-CDS-P-wetherbeei_contig6006:118..3431683186882.1936028-CDS-P-wetherbeei_contig6006:118..343Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6006 119..343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.2050061-UTR-P-wetherbeei_contig6006:343..3491683186882.2050061-UTR-P-wetherbeei_contig6006:343..349Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig6006 344..349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6006.1.1prot_P-wetherbeei_contig6006.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6006 119..343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6006.1.1

>prot_P-wetherbeei_contig6006.1.1 ID=prot_P-wetherbeei_contig6006.1.1|Name=mRNA_P-wetherbeei_contig6006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=75bp
MPFSIKFLVQGDPGDPETGATATVDVKDQDFRGTALTLAKLRDLFPFEGK
WHFRLRLADPAGRSSYVWLDLTREA
back to top

mRNA from alignment at P-wetherbeei_contig6006:119..349-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6006.1.1 ID=mRNA_P-wetherbeei_contig6006.1.1|Name=mRNA_P-wetherbeei_contig6006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=231bp|location=Sequence derived from alignment at P-wetherbeei_contig6006:119..349- (Phaeothamnion wetherbeei SAG_119_79)
TTTGTGATGCCTTTCTCTATTAAATTTCTCGTCCAAGGCGACCCCGGAGA
CCCAGAAACCGGCGCCACGGCGACCGTCGATGTCAAGGATCAAGACTTTC
GCGGAACTGCTTTGACATTGGCGAAACTGAGAGACCTGTTCCCATTCGAA
GGAAAATGGCACTTCCGCCTGCGCTTGGCAGACCCCGCAGGACGCTCATC
GTACGTGTGGCTTGATTTGACGCGAGAAGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig6006:119..349-

>mRNA_P-wetherbeei_contig6006.1.1 ID=mRNA_P-wetherbeei_contig6006.1.1|Name=mRNA_P-wetherbeei_contig6006.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=225bp|location=Sequence derived from alignment at P-wetherbeei_contig6006:119..349- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCTTTCTCTATTAAATTTCTCGTCCAAGGCGACCCCGGAGACCCAGA
AACCGGCGCCACGGCGACCGTCGATGTCAAGGATCAAGACTTTCGCGGAA
CTGCTTTGACATTGGCGAAACTGAGAGACCTGTTCCCATTCGAAGGAAAA
TGGCACTTCCGCCTGCGCTTGGCAGACCCCGCAGGACGCTCATCGTACGT
GTGGCTTGATTTGACGCGAGAAGCC
back to top