mRNA_P-wetherbeei_contig6004.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig6004.1.1
Unique NamemRNA_P-wetherbeei_contig6004.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Match: A0A836CKY4_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKY4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.550e-15
Identity = 40/89 (44.94%), Postives = 57/89 (64.04%), Query Frame = 1 
Query:    4 IVSGRLCAPSQLVTWDKANNRTTIWRVLCGSASAGAHRVVSATIVPMVQPSVDGFEYEKCEQIVKAYEPFQEALAKRGLSIDEVYADAW 270
            +  G++   +++V WDKA N T++ +V  G+  A    V+S  I+  VQPSVDG+EYE  E IVKAY PFQEA  +RG+  + +  DAW
Sbjct:   84 VNEGKMGRCAKVVCWDKAKNHTSVSKVSLGAGGARGS-VLSHDIIHDVQPSVDGYEYELVEAIVKAYPPFQEACKRRGVDPEHICIDAW 171
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BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Match: A0A0U9HIE8_KLENI (Amine oxidase n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A0U9HIE8_KLENI)

HSP 1 Score: 72.0 bits (175), Expect = 9.770e-13
Identity = 39/87 (44.83%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   31 SQLVTWDKANNRTTIWRVLCGSASA----GAHR--VVSATIVPMVQPSVDGFEYEKCEQIVKAYEPFQEALAKRGLS-IDEVYADAW 270
            ++L  ++KANN TTIW V      A    G HR  V S  ++P VQP++D  EY +CE +VKAYEPF EA+ KRG+  ++ +  D W
Sbjct:  185 ARLTVYNKANNETTIWVVQLKEVHARQRGGHHRGTVKSVEVIPDVQPAMDAAEYAQCESLVKAYEPFIEAMKKRGVDDMELIMVDPW 271
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BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Match: A0A251UNN5_HELAN (Amine oxidase n=6 Tax=Asteraceae TaxID=4210 RepID=A0A251UNN5_HELAN)

HSP 1 Score: 69.3 bits (168), Expect = 8.640e-12
Identity = 38/87 (43.68%), Postives = 54/87 (62.07%), Query Frame = 1 
Query:   31 SQLVTWDKANNRTTIWRVLCGSASA----GAHR--VVSATIVPMVQPSVDGFEYEKCEQIVKAYEPFQEALAKRGLS-IDEVYADAW 270
            ++LV ++K +N T+IW V      A    G HR  V+S+  +  VQP +D  EY +CE++VK Y PFQEA+ KRG+  +D V  DAW
Sbjct:  148 ARLVVYNKKSNETSIWIVELSEVHATTRGGHHRGKVISSKTIRDVQPPMDAVEYAECEEVVKDYPPFQEAMKKRGIEDMDLVMVDAW 234
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BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Match: A0A7J7MRR9_9MAGN (Amine oxidase n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7MRR9_9MAGN)

HSP 1 Score: 68.6 bits (166), Expect = 1.580e-11
Identity = 35/87 (40.23%), Postives = 56/87 (64.37%), Query Frame = 1 
Query:   31 SQLVTWDKANNRTTIWRVLCG---SASAGAH---RVVSATIVPMVQPSVDGFEYEKCEQIVKAYEPFQEALAKRGLS-IDEVYADAW 270
            ++L+ +++ +N T+IW V      +A+ G H   +V+SA +VP VQP +D  EY +CE +VK + PF+EA+ KRG+  +D V  D W
Sbjct:  167 ARLIIYNRKSNETSIWIVELSEVHAATRGGHHRGKVISAQVVPDVQPPMDAVEYAECEAVVKDFPPFREAMKKRGIEDLDLVMVDPW 253
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BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Match: UPI001B8FD8F8 (primary-amine oxidase n=2 Tax=Metabacillus litoralis TaxID=152268 RepID=UPI001B8FD8F8)

HSP 1 Score: 53.9 bits (128), Expect = 2.250e-6
Identity = 28/52 (53.85%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:  118 VVSATIVPMVQPSVDGFEYEKCEQIVKAYEPFQEALAKRGLS-IDEVYADAW 270
            V+S T VP VQP+V   E+E+CEQ+VK Y  FQEAL KRG++ ++ V  D W
Sbjct:   92 VISWTYVPGVQPAVMLDEFEECEQVVKNYPEFQEALLKRGITDVNLVMVDPW 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig6004.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A836CKY4_9STRA3.550e-1544.94Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A0U9HIE8_KLENI9.770e-1344.83Amine oxidase n=1 Tax=Klebsormidium nitens TaxID=1... [more]
A0A251UNN5_HELAN8.640e-1243.68Amine oxidase n=6 Tax=Asteraceae TaxID=4210 RepID=... [more]
A0A7J7MRR9_9MAGN1.580e-1140.23Amine oxidase n=1 Tax=Kingdonia uniflora TaxID=393... [more]
UPI001B8FD8F82.250e-653.85primary-amine oxidase n=2 Tax=Metabacillus litoral... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig6004contigP-wetherbeei_contig6004:2513..3075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog3827.XP_004509661.1
PFAMsCu_amine_oxid,Cu_amine_oxidN2,Cu_amine_oxidN3
Model size270
Max annot lvl35493|Streptophyta
KEGG rclassRC00062,RC00189,RC00676,RC01052
KEGG koko:K00276
KEGG ReactionR02382,R02529,R02613,R03139,R04027,R04300,R06154,R06740
KEGG Pathwayko00260,ko00350,ko00360,ko00410,ko00950,ko00960,ko01100,ko01110,map00260,map00350,map00360,map00410,map00950,map00960,map01100,map01110
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.8e-14
EggNOG OGsCOG3733@1|root,KOG1186@2759|Eukaryota,37JD8@33090|Viridiplantae,3G7P3@35493|Streptophyta,4JF26@91835|fabids
EC1.4.3.21
Descriptionamine oxidase
Cds size270
COG categoryQ
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186882.1136484-CDS-P-wetherbeei_contig6004:2512..27281683186882.1136484-CDS-P-wetherbeei_contig6004:2512..2728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6004 2513..2728 +
1683186882.1266763-CDS-P-wetherbeei_contig6004:3021..30751683186882.1266763-CDS-P-wetherbeei_contig6004:3021..3075Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig6004 3022..3075 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig6004.1.1prot_P-wetherbeei_contig6004.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig6004 2513..3075 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig6004.1.1

>prot_P-wetherbeei_contig6004.1.1 ID=prot_P-wetherbeei_contig6004.1.1|Name=mRNA_P-wetherbeei_contig6004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
PIVSGRLCAPSQLVTWDKANNRTTIWRVLCGSASAGAHRVVSATIVPMVQ
PSVDGFEYEKCEQIVKAYEPFQEALAKRGLSIDEVYADAW
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mRNA from alignment at P-wetherbeei_contig6004:2513..3075+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig6004.1.1 ID=mRNA_P-wetherbeei_contig6004.1.1|Name=mRNA_P-wetherbeei_contig6004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=563bp|location=Sequence derived from alignment at P-wetherbeei_contig6004:2513..3075+ (Phaeothamnion wetherbeei SAG_119_79)
CCTATCGTTTCCGGGCGGCTCTGCGCACCGTCGCAGCTCGTGACGTGGGA
CAAGGCCAACAACCGCACGACGATCTGGCGCGTGCTCTGCGGCTCGGCGT
CGGCCGGCGCGCACCGCGTCGTCAGCGCCACCATTGTGCCGATGGTGCAG
CCGTCCGTCGACGGCTTCGAGTACGAGAAGTGCGAGCAAATCGTCAAGGC
GTACGAGCCGTTCCAGGTGCGGCGTGCGACTGCCGGAGATAGTTTCGGGA
AAGTTTTCTTGGTCTGCTCTTCCTGACGAAGTCATTTTATCCTTTGCTTT
GCGTTCCGTTGAAGAATTTCTCATTCTTTTTGAATAGCGTAAAGCGCATT
CATTTTTATTTTTCGCGTTGTCGTTCGCACATTCGCTGCTCTCGTTCTAT
CTTCCTTGGCGACAAACATGTATTCCCAACGTGACGACTCGTTTTTAAGT
CTTCATGATCCCTGTATGCACTCTTAGATATACGTTCCACATCGCTTTCT
TCCGAACAGGAGGCGCTAGCGAAGCGCGGCCTGAGCATCGACGAGGTGTA
CGCGGACGCGTGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig6004:2513..3075+

>mRNA_P-wetherbeei_contig6004.1.1 ID=mRNA_P-wetherbeei_contig6004.1.1|Name=mRNA_P-wetherbeei_contig6004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig6004:2513..3075+ (Phaeothamnion wetherbeei SAG_119_79)
CCTATCGTTTCCGGGCGGCTCTGCGCACCGTCGCAGCTCGTGACGTGGGA
CAAGGCCAACAACCGCACGACGATCTGGCGCGTGCTCTGCGGCTCGGCGT
CGGCCGGCGCGCACCGCGTCGTCAGCGCCACCATTGTGCCGATGGTGCAG
CCGTCCGTCGACGGCTTCGAGTACGAGAAGTGCGAGCAAATCGTCAAGGC
GTACGAGCCGTTCCAGGAGGCGCTAGCGAAGCGCGGCCTGAGCATCGACG
AGGTGTACGCGGACGCGTGG
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