mRNA_P-wetherbeei_contig5998.6.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5998.6.1
Unique NamemRNA_P-wetherbeei_contig5998.6.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5998.6.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5998contigP-wetherbeei_contig5998:1586..2419 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size628
Hectar predicted targeting categoryother localisation
Exons2
Cds size417
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.682965-UTR-P-wetherbeei_contig5998:1585..16551683186880.682965-UTR-P-wetherbeei_contig5998:1585..1655Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5998 1586..1655 -
1683186880.6936688-UTR-P-wetherbeei_contig5998:1862..20021683186880.6936688-UTR-P-wetherbeei_contig5998:1862..2002Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5998 1863..2002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.705009-CDS-P-wetherbeei_contig5998:2002..24191683186880.705009-CDS-P-wetherbeei_contig5998:2002..2419Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5998 2003..2419 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5998.6.1prot_P-wetherbeei_contig5998.6.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5998 2003..2419 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5998.6.1

>prot_P-wetherbeei_contig5998.6.1 ID=prot_P-wetherbeei_contig5998.6.1|Name=mRNA_P-wetherbeei_contig5998.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=139bp
AADASTAAANSGTDTGRHRPTHAVSSVLHTLSVFSRVPLFRFDSVDVETP
LVTGAMPLLSRSRALILPPSFRFVWHAVSLAVCRGFATLFLFLFPGSVSI
PLSLFTGRQYALMRCAASFPSCVYPPPLSSAVSKPENP*
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mRNA from alignment at P-wetherbeei_contig5998:1586..2419-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5998.6.1 ID=mRNA_P-wetherbeei_contig5998.6.1|Name=mRNA_P-wetherbeei_contig5998.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=834bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:1586..2419- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGACGCCTCAACCGCAGCAGCAAACTCCGGCACCGACACTGGCCG
CCACCGCCCGACCCACGCCGTGAGCTCAGTACTACACACACTTTCTGTTT
TTTCCCGTGTCCCCCTTTTCCGCTTTGACTCTGTTGATGTGGAGACACCT
TTGGTAACTGGTGCCATGCCTCTGCTGTCTCGGTCTCGTGCCCTCATCCT
ACCTCCCTCTTTTCGTTTCGTTTGGCACGCGGTGAGTCTAGCTGTTTGTC
GTGGCTTTGCGACATTGTTTCTTTTCCTATTTCCTGGTTCCGTTTCCATT
CCACTTTCGCTTTTTACGGGAAGGCAGTATGCACTGATGCGTTGCGCCGC
GAGTTTCCCCTCATGCGTTTATCCTCCACCCCTCTCATCCGCCGTGTCGA
AACCGGAAAACCCGTAATATCTCTCTTCGTCTCGCAGGCAGCCGAGCCAG
CAGATCACCGCGGCACCCACACAGATCCAAACAGCAGCGCCGACGCAAAG
TCAAACGGCAGCGCCCACGCAAATTGTCACCGTCCGCCCGACGCCCCAGC
CGACGGGGTGCGTCTAGCAGATTTTCCGACGTTCCTCGAGCAGTTGAACT
TCATATTTACTCGCCGCCAAAGCGCGACCAAGGGAGCCCTTAGGCTGCGT
TCCTATCCCGTCTCTCACACGCAACTTTGTTCCTGGCTTGGGGGCCTTGT
CTCTTTTCGCTTCCTCGCTTCGTCCCCTTTCTCTGTCTCTTTGCTGCACC
TTTTCTTTTTGCAGGCAGCCGACGCCGCAACCGCAGCAGCAGACTCCGGC
ACCGACACTGACCGCCACCGCCCGACCCACGCCG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5998:1586..2419-

>mRNA_P-wetherbeei_contig5998.6.1 ID=mRNA_P-wetherbeei_contig5998.6.1|Name=mRNA_P-wetherbeei_contig5998.6.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=417bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:1586..2419- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGACGCCTCAACCGCAGCAGCAAACTCCGGCACCGACACTGGCCG
CCACCGCCCGACCCACGCCGTGAGCTCAGTACTACACACACTTTCTGTTT
TTTCCCGTGTCCCCCTTTTCCGCTTTGACTCTGTTGATGTGGAGACACCT
TTGGTAACTGGTGCCATGCCTCTGCTGTCTCGGTCTCGTGCCCTCATCCT
ACCTCCCTCTTTTCGTTTCGTTTGGCACGCGGTGAGTCTAGCTGTTTGTC
GTGGCTTTGCGACATTGTTTCTTTTCCTATTTCCTGGTTCCGTTTCCATT
CCACTTTCGCTTTTTACGGGAAGGCAGTATGCACTGATGCGTTGCGCCGC
GAGTTTCCCCTCATGCGTTTATCCTCCACCCCTCTCATCCGCCGTGTCGA
AACCGGAAAACCCGTAA
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