mRNA_P-wetherbeei_contig5998.8.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5998.8.1
Unique NamemRNA_P-wetherbeei_contig5998.8.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5998.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5998contigP-wetherbeei_contig5998:2816..3514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons2
Cds size276
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.6230872-UTR-P-wetherbeei_contig5998:2815..28741683186880.6230872-UTR-P-wetherbeei_contig5998:2815..2874Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5998 2816..2874 -
1683186880.6539636-UTR-P-wetherbeei_contig5998:3389..35141683186880.6539636-UTR-P-wetherbeei_contig5998:3389..3514Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5998 3390..3514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.6328666-CDS-P-wetherbeei_contig5998:2874..28911683186880.6328666-CDS-P-wetherbeei_contig5998:2874..2891Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5998 2875..2891 -
1683186880.6435657-CDS-P-wetherbeei_contig5998:3130..33891683186880.6435657-CDS-P-wetherbeei_contig5998:3130..3389Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5998 3131..3389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5998.8.1prot_P-wetherbeei_contig5998.8.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5998 2875..3389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5998.8.1

>prot_P-wetherbeei_contig5998.8.1 ID=prot_P-wetherbeei_contig5998.8.1|Name=mRNA_P-wetherbeei_contig5998.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MLCGRASSSRTTFTICADLLLKEKEVTILPYSRFPAPHRNNLLLFLSFLL
TDRRRCSRRRQSRNGRRRSRCSKPSCLRWLSLPDPRRSRRK*
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mRNA from alignment at P-wetherbeei_contig5998:2816..3514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5998.8.1 ID=mRNA_P-wetherbeei_contig5998.8.1|Name=mRNA_P-wetherbeei_contig5998.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=699bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:2816..3514- (Phaeothamnion wetherbeei SAG_119_79)
GGACCTCCTCGCCGACGCAGGTCCCGTCGGCGGCCCCCACGCAGATCCAA
ACTCTTCGCCCGACGGAGTGCGTTTTGGCGATCCCCCCCCTCAGATTTTC
CTCATCTTTTGCACGCTGGGTTGGTATGCTCTGCGGGCGTGCATCAAGTT
CCCGCACAACTTTCACGATATGCGCTGACCTCTTACTGAAGGAGAAGGAA
GTCACGATTTTACCGTATTCGCGCTTTCCCGCCCCTCATCGAAACAATTT
GCTTCTTTTCCTCTCCTTCCTTCTTACAGACAGGCGACGGTGCAGCCGGC
GCAGGCAATCACGCAACGGCCGACGACGCAGCCGCTGCAGCAAACCGTCG
TGCCTCCGCTGGCTGAGTCTGCCCGACCCACGCCGTGAGTGGGATGCTGC
CGCTGCTGTCAATAATCGCTCCAGTATTATATGGCGGCCTTGTCTCCATC
CTTACCGCTGGTTTATGCGGTTTTCGCGTGCTTGTCATCTCCGCTTGCGC
ACAGTGCCTCGCCCTTTCTTGCTCCTTCTTGTTTTTAAGGGGTTCAAATC
CTTCTTTTTTCCCCTCTTTTCGGTGCGTGTGTTTTTGGTTTGCCCGTCCC
TTTTTCTCTTTTGTTATGCGCAGGCAGCCGACGCAAGTGACCACGCAGCA
GCCGACACCGCAGCCGAGCCAGCAGATCCAAACCGCCCGGCCGACTGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5998:2816..3514-

>mRNA_P-wetherbeei_contig5998.8.1 ID=mRNA_P-wetherbeei_contig5998.8.1|Name=mRNA_P-wetherbeei_contig5998.8.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:2816..3514- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTCTGCGGGCGTGCATCAAGTTCCCGCACAACTTTCACGATATGCGC
TGACCTCTTACTGAAGGAGAAGGAAGTCACGATTTTACCGTATTCGCGCT
TTCCCGCCCCTCATCGAAACAATTTGCTTCTTTTCCTCTCCTTCCTTCTT
ACAGACAGGCGACGGTGCAGCCGGCGCAGGCAATCACGCAACGGCCGACG
ACGCAGCCGCTGCAGCAAACCGTCGTGCCTCCGCTGGCTGAGTCTGCCCG
ACCCACGCCGCAGCCGACGCAAGTGA
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