mRNA_P-wetherbeei_contig5998.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5998.3.1
Unique NamemRNA_P-wetherbeei_contig5998.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5998.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5998contigP-wetherbeei_contig5998:1124..1655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size158
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size156
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.5808532-CDS-P-wetherbeei_contig5998:1124..12111683186880.5808532-CDS-P-wetherbeei_contig5998:1124..1211Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5998 1125..1211 -
1683186880.591008-CDS-P-wetherbeei_contig5998:1586..16551683186880.591008-CDS-P-wetherbeei_contig5998:1586..1655Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5998 1587..1655 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5998.3.1prot_P-wetherbeei_contig5998.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5998 1125..1655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5998.3.1

>prot_P-wetherbeei_contig5998.3.1 ID=prot_P-wetherbeei_contig5998.3.1|Name=mRNA_P-wetherbeei_contig5998.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
AADAATAAADSGTDTDRHRPTHAAAEPADHPNNSAYTDPNGSAYADPNGS
AD
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mRNA from alignment at P-wetherbeei_contig5998:1124..1655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5998.3.1 ID=mRNA_P-wetherbeei_contig5998.3.1|Name=mRNA_P-wetherbeei_contig5998.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=532bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:1124..1655- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGACGCCGCAACCGCAGCAGCAGACTCCGGCACCGACACTGACCG
CCACCGCCCGACCCACGCCGTGAGCTCAGTACTGCACACACTTTCTGTTT
TTCCCCGAGTCCCTTTTCCACTATGTCTCTGTTGATGTGGAGACACCTTT
GGAAACTGGTGCCATGCCTCTGCTGTCTCGGCCTCGTGCCCTCATCCTAC
CTCCTTTCCTTTCATTTGGCACGCGGTGAATCTAGCTGTTTGTCGCGGCT
TTGCAACGTTGTTTCTTTTCCTGTCTCCTGGTTCCATTTCCAATTCCGCT
TTCGTTTTCCATGGGAAGGCGGTACACACTAGGGTTTTCATGCCGCGTAT
CCCCCCAAAGCCTTTTTCCTCCACCCCTTTCATCGGCCGTGGCCACTGCC
GTGTCGAAACCGGAAAGCCCGCAATATCTCTCTTCCTCTCGCAGGCAGCC
GAGCCAGCAGATCATCCAAACAATAGCGCCTACACAGATCCAAACGGCAG
CGCCTACGCAGATCCAAACGGCAGCGCCGACA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5998:1124..1655-

>mRNA_P-wetherbeei_contig5998.3.1 ID=mRNA_P-wetherbeei_contig5998.3.1|Name=mRNA_P-wetherbeei_contig5998.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig5998:1124..1655- (Phaeothamnion wetherbeei SAG_119_79)
GCAGCCGACGCCGCAACCGCAGCAGCAGACTCCGGCACCGACACTGACCG
CCACCGCCCGACCCACGCCGCAGCCGAGCCAGCAGATCATCCAAACAATA
GCGCCTACACAGATCCAAACGGCAGCGCCTACGCAGATCCAAACGGCAGC
GCCGAC
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