mRNA_P-wetherbeei_contig5993.1.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5993.1.3
Unique NamemRNA_P-wetherbeei_contig5993.1.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.000e-10
Identity = 39/79 (49.37%), Postives = 47/79 (59.49%), Query Frame = 2 
Query:  398 SQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFRLCAAQSCDP 634
            +QD L++L+ C R AG+ LR GRSV +DATN     R  W   AR+ GA  RCI    PK+  FHLNAFR      CDP
Sbjct:  516 NQDELKSLKRCEREAGERLRGGRSVVIDATNAGRGTRAGWLDLARQHGATARCIYLTTPKEACFHLNAFR-----GCDP 589
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: UPI001E1DE040 (bifunctional polynucleotide phosphatase/kinase-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DE040)

HSP 1 Score: 67.4 bits (163), Expect = 1.810e-8
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 2 
Query:  398 SQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            ++DT+ T++ C +AA +AL+ G+SV  D TNP  A R+++   A+K G  CRC V D P +L+ HLN FR
Sbjct:  286 NRDTMGTMQKCVKAATEALKAGKSVVADNTNPTPAARKEFIDCAKKCGVPCRCFVMDTPIELAHHLNYFR 355
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: A0A433U441_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433U441_ELYCH)

HSP 1 Score: 67.0 bits (162), Expect = 2.430e-8
Identity = 31/70 (44.29%), Postives = 44/70 (62.86%), Query Frame = 2 
Query:  398 SQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            ++DTL T E C + AG+A+++G++V VD TNP    R  +   A+K G  CRCI    P DL+ HLN +R
Sbjct:  288 NRDTLGTAEKCLKVAGEAMKKGKNVVVDNTNPAKNARASFVELAKKNGVPCRCIWLQTPLDLAHHLNLYR 357
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: A0A6J8EQL8_MYTCO (PNKP n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8EQL8_MYTCO)

HSP 1 Score: 65.9 bits (159), Expect = 5.660e-8
Identity = 32/78 (41.03%), Postives = 49/78 (62.82%), Query Frame = 2 
Query:  374 QHQFSVDDSQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            +H + V + +DT+ T++ C +AA +A++ G+SV  D TNP  A R+D+   A+K G  CRC V   P +L+ HLN  R
Sbjct:  276 KHGYQVVN-RDTMGTMDKCVKAAKEAVKNGKSVVADNTNPSTAARKDFVDVAKKAGIPCRCFVMKTPLELAHHLNLVR 352
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: A0A815JRZ5_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A815JRZ5_9BILA)

HSP 1 Score: 63.2 bits (152), Expect = 4.250e-7
Identity = 39/102 (38.24%), Postives = 55/102 (53.92%), Query Frame = 2 
Query:  305 LILLSSSPRSSPRLSSLIPFLLYQHQFSVDDSQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFRL 610
            L++L   P S     S   F  Y ++     ++DTL T   C +AA DAL+ G+SV VD TNP A+ R ++ A A+     CRC V + P +L  HLN  R+
Sbjct:  263 LVILQGPPASGKSTFSRRYFKPYNYEII---NRDTLITPAKCLKAATDALKNGKSVVVDNTNPGASTRSEYIALAKSYKVPCRCFVLNTPIELCHHLNYVRV 361
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: V4BHH6_LOTGI (Uncharacterized protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V4BHH6_LOTGI)

HSP 1 Score: 60.1 bits (144), Expect = 4.070e-6
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 2 
Query:  398 SQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            ++DT+ T E C +AA +AL++G+SV  D TNP  + R+ +   A   G  CRC     P+++S HLN  R
Sbjct:  288 NRDTMGTQEKCIKAAKEALKKGKSVVADNTNPSVSARQPYVEMAESKGIPCRCFYMQTPREVSNHLNYMR 357
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: UPI0018D6FE9E (bifunctional polynucleotide phosphatase/kinase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D6FE9E)

HSP 1 Score: 60.1 bits (144), Expect = 4.500e-6
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 2 
Query:  347 SSLIPFLLYQHQFSVDDSQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            SS +   L  H +S   ++DTL T   C  A  +A++ G+SV VD TNP  A R D+   A+    + RC V D PK+++ HLN  R
Sbjct:  312 SSFVRKYLLPHGYS-HVNRDTLNTPAKCIAATKEAIKSGKSVVVDNTNPSKAARSDYIDLAKNAKYKVRCFVVDTPKEIAHHLNYMR 397
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: A0A8J1TR20_OWEFU (Ofus.G053166 protein n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1TR20_OWEFU)

HSP 1 Score: 59.3 bits (142), Expect = 7.630e-6
Identity = 30/73 (41.10%), Postives = 42/73 (57.53%), Query Frame = 2 
Query:  389 VDDSQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            V  ++DTL     C +A  DAL+ G+SV +D TNP   VR D+   A+K G   RC V   P++++ HLN  R
Sbjct:  306 VHINRDTLGNAAKCIKATQDALKAGKSVVIDNTNPSPLVRADYMQLAKKFGVPARCFVMSTPQEVAHHLNYVR 378
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: UPI001CF9A31E (bifunctional polynucleotide phosphatase/kinase n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CF9A31E)

HSP 1 Score: 59.3 bits (142), Expect = 9.680e-6
Identity = 31/70 (44.29%), Postives = 40/70 (57.14%), Query Frame = 2 
Query:  398 SQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            ++DTL T + C     +ALR G+SV VD TNP    R  +   A+K G  CRC +F   KDL+ H N FR
Sbjct:  474 NRDTLGTWQKCVAGCEEALRNGKSVVVDNTNPDIESRSRYIECAKKAGVPCRCFLFTASKDLARHNNRFR 543
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BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Match: UPI0018D8821D (LOW QUALITY PROTEIN: bifunctional polynucleotide phosphatase/kinase-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D8821D)

HSP 1 Score: 57.4 bits (137), Expect = 2.150e-5
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 2 
Query:  347 SSLIPFLLYQHQFSVDDSQDTLRTLEACRRAAGDALRRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAFR 607
            SS +   L  H +S   ++DTL T   C  A  +A++ G+SV VD TNP  A R D+   A+    + RC V D P +++ HLN  R
Sbjct:  182 SSFVRKYLLPHGYS-HVNRDTLXTPAKCIAATKEAIKSGKSVVVDNTNPSKAARSDYIDLAKNAKYKVRCFVVDTPXEIAHHLNYMR 267
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5993.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FLS6_ECTSI1.000e-1049.37Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
UPI001E1DE0401.810e-845.71bifunctional polynucleotide phosphatase/kinase-lik... [more]
A0A433U441_ELYCH2.430e-844.29Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A6J8EQL8_MYTCO5.660e-841.03PNKP n=3 Tax=Mytilus TaxID=6548 RepID=A0A6J8EQL8_M... [more]
A0A815JRZ5_9BILA4.250e-738.24Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
V4BHH6_LOTGI4.070e-640.00Uncharacterized protein n=1 Tax=Lottia gigantea Ta... [more]
UPI0018D6FE9E4.500e-639.08bifunctional polynucleotide phosphatase/kinase-lik... [more]
A0A8J1TR20_OWEFU7.630e-641.10Ofus.G053166 protein n=1 Tax=Owenia fusiformis Tax... [more]
UPI001CF9A31E9.680e-644.29bifunctional polynucleotide phosphatase/kinase n=1... [more]
UPI0018D8821D2.150e-537.93LOW QUALITY PROTEIN: bifunctional polynucleotide p... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5993contigP-wetherbeei_contig5993:454..2083 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FLS6
PFAMsAAA,AAA_33,DSPc,PNK3P
Model size1363
Max annot lvl2759|Eukaryota
KEGG koko:K08073
Hectar predicted targeting categoryother localisation
Exons2
Evalue6e-12
EggNOG OGsCOG0241@1|root,KOG2134@2759|Eukaryota
EC2.7.1.78,3.1.3.32
DescriptionDNA-3'-diphospho-5'-guanosine diphosphatase
Cds size1023
COG categoryE
BRITEko00000,ko01000,ko01009,ko03400
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.4411662-UTR-P-wetherbeei_contig5993:453..4571683186880.4411662-UTR-P-wetherbeei_contig5993:453..457Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5993 454..457 +
1683186880.4753726-UTR-P-wetherbeei_contig5993:1747..20831683186880.4753726-UTR-P-wetherbeei_contig5993:1747..2083Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5993 1748..2083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.4545753-CDS-P-wetherbeei_contig5993:457..10051683186880.4545753-CDS-P-wetherbeei_contig5993:457..1005Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5993 458..1005 +
1683186880.465251-CDS-P-wetherbeei_contig5993:1272..17471683186880.465251-CDS-P-wetherbeei_contig5993:1272..1747Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5993 1273..1747 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5993.1.3prot_P-wetherbeei_contig5993.1.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5993 458..1747 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5993.1.3

>prot_P-wetherbeei_contig5993.1.3 ID=prot_P-wetherbeei_contig5993.1.3|Name=mRNA_P-wetherbeei_contig5993.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=341bp
MREPGAPPPSYGRYHDICQFSLVLLLYERSVYAEHLLRWFVHCIQHHRTV
DGITALGPFSSLSCDLHTCCRPFHACFFSALHGITKVVSSSFLRFVLCSS
LILLSSSPRSSPRLSSLIPFLLYQHQFSVDDSQDTLRTLEACRRAAGDAL
RRGRSVAVDATNPQAAVRRDWAAFARKGGARCRCIVFDRPKDLSFHLNAF
RLCAAQSCDPALAPALEPAAGGTADAVVAETVPATAAGVAAGVTAAVAVA
DSMAPLPATTAVAAVGVAAAVAAAASAPAEETAAAVPGRAVPPVAIHTYF
KRYEPVAAAAEGFESVEVAPFVPGPFENDEQRRLFYMFLL*
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mRNA from alignment at P-wetherbeei_contig5993:454..2083+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5993.1.3 ID=mRNA_P-wetherbeei_contig5993.1.3|Name=mRNA_P-wetherbeei_contig5993.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1630bp|location=Sequence derived from alignment at P-wetherbeei_contig5993:454..2083+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTATGCGTGAACCAGGTGCGCCCCCCCCTTCATACGGCCGATATCACG
ATATTTGTCAGTTCAGTTTAGTACTTTTGCTGTACGAAAGGAGTGTGTAC
GCGGAACATCTTTTGCGCTGGTTTGTCCATTGTATTCAACATCATAGAAC
CGTTGACGGAATCACGGCGTTAGGGCCTTTTTCGTCCCTTTCGTGTGATC
TACACACATGCTGCCGCCCCTTTCATGCTTGTTTCTTCAGCGCCTTGCAC
GGTATAACCAAAGTAGTCTCATCGTCCTTCCTGCGTTTCGTTCTCTGCTC
ATCCCTCATCCTTCTCTCCTCATCTCCTCGGTCATCTCCTCGCTTGTCTT
CTCTCATCCCATTCCTCCTTTATCAACACCAATTTTCGGTCGACGACTCT
CAGGACACGTTGCGGACGCTGGAAGCGTGTCGGCGGGCAGCCGGCGATGC
GCTGCGGCGCGGGCGCTCGGTGGCGGTGGACGCCACCAACCCGCAGGCGG
CCGTCCGGCGCGACTGGGCCGCCTTCGCGCGGAAGGGAGGCGCCCGCTGC
AGGCAGGTCGGGCATGGAGGAGGAAGCATTTTGTGTTCTTCCGTCTTTCT
TCTTCTGGTTTATGACGTTTCGGGATGGACCGGAAGAGGTGCCAGATGTG
ACTTATTATTTTGGTATCATGCAGAGAAGCGGACGGTCGGGAATAATGCG
CTTTCCTTTGCCCTTCTCCTGCGAAAGCGGCCATGTCTGCTTTGTGGCGC
TGGCGCTTGTGTCGATCCTTTCCCTCTCTCATGACGCCTCATTTTTCTTT
TCACGATGTACTACGGCAGATGCATCGTCTTCGACCGTCCGAAGGACCTC
TCCTTCCACTTGAATGCCTTTCGGCTCTGTGCAGCCCAGAGCTGCGACCC
GGCGCTTGCGCCCGCGCTAGAACCCGCAGCCGGCGGCACCGCCGACGCCG
TCGTAGCAGAAACCGTGCCGGCGACGGCTGCGGGCGTCGCTGCTGGAGTC
ACTGCTGCTGTCGCAGTCGCCGACAGCATGGCGCCACTGCCTGCAACGAC
AGCGGTAGCAGCGGTCGGGGTGGCGGCGGCGGTTGCGGCGGCGGCGTCAG
CTCCGGCGGAGGAGACGGCAGCTGCGGTACCCGGGCGCGCGGTGCCGCCG
GTGGCGATCCATACGTACTTCAAGCGCTACGAGCCCGTGGCGGCCGCTGC
CGAGGGCTTCGAGAGCGTCGAGGTCGCGCCGTTCGTCCCCGGGCCGTTCG
AGAACGACGAGCAGCGCCGCCTTTTCTATATGTTTCTCTTGTAGTGAGGA
GAACCGTTGGAGGAACGGCATGGGTGGGGAAAAGCGAGAAGGAAGGATGA
GAAGCACTAGCGATGTCGGCAGGCGGCGGGGGAAGGGTGAAGGGGGAGAT
ATTGCGATACCGTCAGCCGCATCCGCTCGTGGGTCAGAACGGAAAGGGCC
GGAATGGACTGGTAGATATGGGTGTGCGGGGAGGTTGCGGCATGTTCGTA
AAAAGAATATGCCAAAGTATGTTATTAGAAGGAGTACTCCGCCCACCCCC
TGCCCAGCCAACAGCCATCCTCAAGAGATGCATGAACGTTTCTTTGGCGT
CCTCGGGACCCCAGCGCGGTGTTTGCTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5993:454..2083+

>mRNA_P-wetherbeei_contig5993.1.3 ID=mRNA_P-wetherbeei_contig5993.1.3|Name=mRNA_P-wetherbeei_contig5993.1.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1023bp|location=Sequence derived from alignment at P-wetherbeei_contig5993:454..2083+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGAACCAGGTGCGCCCCCCCCTTCATACGGCCGATATCACGATAT
TTGTCAGTTCAGTTTAGTACTTTTGCTGTACGAAAGGAGTGTGTACGCGG
AACATCTTTTGCGCTGGTTTGTCCATTGTATTCAACATCATAGAACCGTT
GACGGAATCACGGCGTTAGGGCCTTTTTCGTCCCTTTCGTGTGATCTACA
CACATGCTGCCGCCCCTTTCATGCTTGTTTCTTCAGCGCCTTGCACGGTA
TAACCAAAGTAGTCTCATCGTCCTTCCTGCGTTTCGTTCTCTGCTCATCC
CTCATCCTTCTCTCCTCATCTCCTCGGTCATCTCCTCGCTTGTCTTCTCT
CATCCCATTCCTCCTTTATCAACACCAATTTTCGGTCGACGACTCTCAGG
ACACGTTGCGGACGCTGGAAGCGTGTCGGCGGGCAGCCGGCGATGCGCTG
CGGCGCGGGCGCTCGGTGGCGGTGGACGCCACCAACCCGCAGGCGGCCGT
CCGGCGCGACTGGGCCGCCTTCGCGCGGAAGGGAGGCGCCCGCTGCAGAT
GCATCGTCTTCGACCGTCCGAAGGACCTCTCCTTCCACTTGAATGCCTTT
CGGCTCTGTGCAGCCCAGAGCTGCGACCCGGCGCTTGCGCCCGCGCTAGA
ACCCGCAGCCGGCGGCACCGCCGACGCCGTCGTAGCAGAAACCGTGCCGG
CGACGGCTGCGGGCGTCGCTGCTGGAGTCACTGCTGCTGTCGCAGTCGCC
GACAGCATGGCGCCACTGCCTGCAACGACAGCGGTAGCAGCGGTCGGGGT
GGCGGCGGCGGTTGCGGCGGCGGCGTCAGCTCCGGCGGAGGAGACGGCAG
CTGCGGTACCCGGGCGCGCGGTGCCGCCGGTGGCGATCCATACGTACTTC
AAGCGCTACGAGCCCGTGGCGGCCGCTGCCGAGGGCTTCGAGAGCGTCGA
GGTCGCGCCGTTCGTCCCCGGGCCGTTCGAGAACGACGAGCAGCGCCGCC
TTTTCTATATGTTTCTCTTGTAG
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