mRNA_P-wetherbeei_contig5986.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5986.1.1
Unique NamemRNA_P-wetherbeei_contig5986.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A835ZPI2_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPI2_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.150e-62
Identity = 92/114 (80.70%), Postives = 104/114 (91.23%), Query Frame = 1 
Query:   28 ERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQK 369
            ERRAWS+REDDAI+ LV H+G KRWS IA +LSKE+  A R+GKQCRTRWLNHLDP+LR+DPWT EEE++IY+AQRRLGN+WAEIAKLL GRTDNAIKNHWYSTMRKNMRRRQK
Sbjct:    1 ERRAWSKREDDAISGLVTHYGVKRWSLIAQNLSKEVEGAVRSGKQCRTRWLNHLDPSLRRDPWTDEEEQVIYNAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNMRRRQK 114
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A7S2ST59_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2ST59_9STRA)

HSP 1 Score: 184 bits (466), Expect = 1.720e-54
Identity = 87/123 (70.73%), Postives = 103/123 (83.74%), Query Frame = 1 
Query:    4 DPSFGTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            +P    +PERRAWSR+EDDAI RLV   GTKRW+ IA  L+ E++   R+GKQCRTRWLNHLDPA++K+PW+  EER+IYDAQ+RLGN+WAEIAKLL GRTDNAIKNHWYSTMR+NMRR  KE
Sbjct:   30 EPVTVDRPERRAWSRKEDDAIVRLVNRHGTKRWAVIAQELNGEISGVFRSGKQCRTRWLNHLDPAIKKEPWSEHEERIIYDAQQRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKE 152
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A835YS16_9STRA (Homeodomain-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS16_9STRA)

HSP 1 Score: 174 bits (441), Expect = 3.120e-54
Identity = 81/109 (74.31%), Postives = 93/109 (85.32%), Query Frame = 1 
Query:   28 ERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNM 354
            ERR+W+R ED+AI RLV   G KRWS +A  L+ E+    R+GKQCRTRWLNHLDP+LRK+PWT EEE++IYDAQRRLGN+WAEIAKLL GRTDNAIKNHWYSTMRKNM
Sbjct:    1 ERRSWTRCEDEAIVRLVAEHGVKRWSLVAQHLNMEIVGVVRSGKQCRTRWLNHLDPSLRKEPWTSEEEQVIYDAQRRLGNKWAEIAKLLTGRTDNAIKNHWYSTMRKNM 109
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A7S2G8M0_9STRA (Hypothetical protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G8M0_9STRA)

HSP 1 Score: 180 bits (457), Expect = 1.830e-53
Identity = 85/119 (71.43%), Postives = 99/119 (83.19%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G +PERRAW+R+EDDAI RLV   GTKRW+ IA  L+ E+    R+GKQCRTRWLNHLDPA++K+PW+  EE +IYDAQ RLGN+WAEIAKLL GRTDNAIKNHWYSTMR+NMRR  KE
Sbjct:   45 GERPERRAWTRKEDDAIVRLVKRHGTKRWACIAQELNTEIPGVFRSGKQCRTRWLNHLDPAIKKEPWSDTEEHIIYDAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNMRRLAKE 163
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: F0Y4P7_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4P7_AURAN)

HSP 1 Score: 167 bits (423), Expect = 3.560e-51
Identity = 79/113 (69.91%), Postives = 95/113 (84.07%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNM 354
            G   +RRAWSR+EDDAI RLV+  GTKRW+ I+  L+KEL    R+GKQCRTRWLNHLDPA++++PW+  EE +IY+AQ RLGN+WAEIAKLL GRTDNAIKNHWYSTMR+NM
Sbjct:   21 GEASQRRAWSRKEDDAIVRLVMTHGTKRWAVISQELNKEL-AGFRSGKQCRTRWLNHLDPAIKREPWSEGEESVIYEAQHRLGNKWAEIAKLLPGRTDNAIKNHWYSTMRRNM 132
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A484E484_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E484_BRELC)

HSP 1 Score: 174 bits (440), Expect = 6.440e-50
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G+  ERRAW+R+EDDAI RLV  +GTKRWS I+  L+ E +   RTGKQCRTRWLNHLDP ++KDPWT EEE++I DAQ RLGN+WAEI+KLL GRTDNAIKNHWYS+MR+ MRR  K+
Sbjct:   15 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNSENHGTERTGKQCRTRWLNHLDPTIKKDPWTTEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQ 133
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: H3HDP9_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3HDP9_PHYRM)

HSP 1 Score: 172 bits (437), Expect = 1.040e-49
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G+  ERRAW+R+EDDAI RLV  +GTKRWS I+  L+ E +   RTGKQCRTRWLNHLDP ++KDPWT EEE++I DAQ RLGN+WAEI+KLL GRTDNAIKNHWYS+MR+ MRR  K+
Sbjct:   15 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQVIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQ 133
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A225WJ05_9STRA (Myb-like DNA-binding protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225WJ05_9STRA)

HSP 1 Score: 173 bits (438), Expect = 1.110e-49
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G+  ERRAW+R+EDDAI RLV  +GTKRWS I+  L+ E +   RTGKQCRTRWLNHLDP ++KDPWT EEE++I DAQ RLGN+WAEI+KLL GRTDNAIKNHWYS+MR+ MRR  K+
Sbjct:   11 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQ 129
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: A0A0P1AUV9_PLAHL (Myb-like dna-binding n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AUV9_PLAHL)

HSP 1 Score: 173 bits (438), Expect = 1.130e-49
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G+  ERRAW+R+EDDAI RLV  +GTKRWS I+  L+ E +   RTGKQCRTRWLNHLDP ++KDPWT EEE++I DAQ RLGN+WAEI+KLL GRTDNAIKNHWYS+MR+ MRR  K+
Sbjct:   15 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGEHHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQ 133
[Close]
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Match: D0MSC4_PHYIT (Myb-like DNA-binding protein, putative n=17 Tax=Phytophthora TaxID=4783 RepID=D0MSC4_PHYIT)

HSP 1 Score: 173 bits (438), Expect = 1.300e-49
Identity = 82/119 (68.91%), Postives = 98/119 (82.35%), Query Frame = 1 
Query:   16 GTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPRTGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNGRTDNAIKNHWYSTMRKNMRRRQKE 372
            G+  ERRAW+R+EDDAI RLV  +GTKRWS I+  L+ E +   RTGKQCRTRWLNHLDP ++KDPWT EEE++I DAQ RLGN+WAEI+KLL GRTDNAIKNHWYS+MR+ MRR  K+
Sbjct:   15 GSTYERRAWTRKEDDAIIRLVEEYGTKRWSVISDHLNGENHGTERTGKQCRTRWLNHLDPTIKKDPWTAEEEQIIEDAQTRLGNKWAEISKLLPGRTDNAIKNHWYSSMRRTMRRMAKQ 133
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5986.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZPI2_9STRA2.150e-6280.70Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2ST59_9STRA1.720e-5470.73Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YS16_9STRA3.120e-5474.31Homeodomain-like protein (Fragment) n=1 Tax=Tribon... [more]
A0A7S2G8M0_9STRA1.830e-5371.43Hypothetical protein (Fragment) n=2 Tax=Dictyocha ... [more]
F0Y4P7_AURAN3.560e-5169.91Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A484E484_BRELC6.440e-5068.91Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
H3HDP9_PHYRM1.040e-4968.91Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A225WJ05_9STRA1.110e-4968.91Myb-like DNA-binding protein n=2 Tax=Phytophthora ... [more]
A0A0P1AUV9_PLAHL1.130e-4968.91Myb-like dna-binding n=1 Tax=Plasmopara halstedii ... [more]
D0MSC4_PHYIT1.300e-4968.91Myb-like DNA-binding protein, putative n=17 Tax=Ph... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5986contigP-wetherbeei_contig5986:298..998 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog325452.fgenesh_scip_prom.46568.8980
PFAMsMyb_DNA-binding
Model size381
Max annot lvl4776|Peronosporales
KEGG koko:K09420
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.66e-51
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota,3Q8VY@4776|Peronosporales
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-01_004600.1
DescriptionMyb-like DNA-binding domain
Cds size381
COG categoryK
BRITEko00000,ko00001,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186880.0509715-CDS-P-wetherbeei_contig5986:297..5051683186880.0509715-CDS-P-wetherbeei_contig5986:297..505Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5986 298..505 -
1683186880.0633135-CDS-P-wetherbeei_contig5986:825..9981683186880.0633135-CDS-P-wetherbeei_contig5986:825..998Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5986 826..998 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5986.1.1prot_P-wetherbeei_contig5986.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5986 298..998 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5986.1.1

>prot_P-wetherbeei_contig5986.1.1 ID=prot_P-wetherbeei_contig5986.1.1|Name=mRNA_P-wetherbeei_contig5986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
EDPSFGTKPERRAWSRREDDAITRLVVHFGTKRWSHIAASLSKELNEAPR
TGKQCRTRWLNHLDPALRKDPWTREEERLIYDAQRRLGNRWAEIAKLLNG
RTDNAIKNHWYSTMRKNMRRRQKEYDG
back to top

mRNA from alignment at P-wetherbeei_contig5986:298..998-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5986.1.1 ID=mRNA_P-wetherbeei_contig5986.1.1|Name=mRNA_P-wetherbeei_contig5986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=701bp|location=Sequence derived from alignment at P-wetherbeei_contig5986:298..998- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCCGAGCTTTGGCACCAAGCCGGAGCGGCGCGCGTGGTCGCGCCG
CGAAGACGACGCCATCACGCGGCTCGTGGTGCACTTCGGCACAAAGCGCT
GGTCGCACATCGCCGCCAGCTTAAGCAAGGAGCTTAATGAAGCGCCACGC
ACGGGCAAGCAGTGCCGCACACGGTGAGCACCGCGCTGATTTCGGGGGGC
AAAGGAGGTGCCGCGAGGCACGAAGAATGACAGTGACTGTTACTCTTGCT
GCCAACGCTGCCAACGCCGCGCTTCCCAACAACGCCACCTCGTGCTGTCG
CGACCTCGTTGCTCTCCCTTTCCTTCCCCCCATTCTCTCTATTCCTTGCA
TGTGCTAACTTGTTGCCGCCGCTCTCTACCGCCACCGCCGCTACTGCCTC
TCACCACCCCTGCCGTCTCTTGCCGCCGTCTTTTGCCGCTGTCCTTTGCT
GCTGCCGCCATCCTCTGCTCATCTGTGCCCGCCCGTGCCGCAGCTGGCTG
AACCACCTGGACCCAGCGCTGCGCAAGGATCCGTGGACGCGCGAGGAGGA
GCGGCTCATCTACGACGCGCAGCGTCGCCTCGGCAACCGCTGGGCGGAGA
TCGCTAAGCTGCTCAACGGCCGCACCGACAACGCAATCAAGAATCATTGG
TACAGCACTATGCGCAAGAACATGCGTCGCCGCCAGAAGGAGTACGACGG
C
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5986:298..998-

>mRNA_P-wetherbeei_contig5986.1.1 ID=mRNA_P-wetherbeei_contig5986.1.1|Name=mRNA_P-wetherbeei_contig5986.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig5986:298..998- (Phaeothamnion wetherbeei SAG_119_79)
GAGGATCCGAGCTTTGGCACCAAGCCGGAGCGGCGCGCGTGGTCGCGCCG
CGAAGACGACGCCATCACGCGGCTCGTGGTGCACTTCGGCACAAAGCGCT
GGTCGCACATCGCCGCCAGCTTAAGCAAGGAGCTTAATGAAGCGCCACGC
ACGGGCAAGCAGTGCCGCACACGCTGGCTGAACCACCTGGACCCAGCGCT
GCGCAAGGATCCGTGGACGCGCGAGGAGGAGCGGCTCATCTACGACGCGC
AGCGTCGCCTCGGCAACCGCTGGGCGGAGATCGCTAAGCTGCTCAACGGC
CGCACCGACAACGCAATCAAGAATCATTGGTACAGCACTATGCGCAAGAA
CATGCGTCGCCGCCAGAAGGAGTACGACGGC
back to top