mRNA_P-wetherbeei_contig5982.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5982.4.1
Unique NamemRNA_P-wetherbeei_contig5982.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5982.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5982contigP-wetherbeei_contig5982:2233..3589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size993
Hectar predicted targeting categoryother localisation
Exons2
Cds size969
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.641202-UTR-P-wetherbeei_contig5982:2232..22561683186879.641202-UTR-P-wetherbeei_contig5982:2232..2256Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5982 2233..2256 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186879.6520019-CDS-P-wetherbeei_contig5982:2256..24001683186879.6520019-CDS-P-wetherbeei_contig5982:2256..2400Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5982 2257..2400 +
1683186879.661418-CDS-P-wetherbeei_contig5982:2764..35891683186879.661418-CDS-P-wetherbeei_contig5982:2764..3589Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5982 2765..3589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5982.4.1prot_P-wetherbeei_contig5982.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5982 2257..3589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5982.4.1

>prot_P-wetherbeei_contig5982.4.1 ID=prot_P-wetherbeei_contig5982.4.1|Name=mRNA_P-wetherbeei_contig5982.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=323bp
MAAEAAAVAEVARLEKRAAVELRIKAAQEEEVRQERVKKMVEEAQVSGLA
KAAAAATKEIEVKADMKAKKEAAAAATAVQAAEDAAKAAVAKREADTAAA
AKREQEEAAAAVAKREQEEAIAAAAEVKAKLEAEQATAAAEKAAAEAAAV
AKREQEEAAAAAAAAAVEAKAKLEAEQAAAAAEKAAADAAAVALREQEKA
AALKAAAEAKAKLEAEQAAAAAAEAAAAREAEQQAAAAAALKAEAEAKEK
LEREQAASAQKAAADAKAAEEVNAAKVKAEAAAVAEAEELLAKAAAVAAE
RAAASAADEEARRKEMEERQHAR
back to top

mRNA from alignment at P-wetherbeei_contig5982:2233..3589+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5982.4.1 ID=mRNA_P-wetherbeei_contig5982.4.1|Name=mRNA_P-wetherbeei_contig5982.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1357bp|location=Sequence derived from alignment at P-wetherbeei_contig5982:2233..3589+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGCTGCTGCCCGGAGGGAAGCCATGGCCGCGGAGGCGGCGGCGGTGGC
CGAGGTGGCCCGGCTGGAGAAGCGGGCGGCAGTGGAGCTGCGCATCAAGG
CGGCGCAGGAGGAAGAAGTGCGCCAGGAGCGCGTCAAGAAGATGGTGGAG
GAGGCGCAGGTTAGTGGAGTCTGCCAGCCAATCGGCCGGTCGGGTCGGCG
AGGGTCGGCAGCCAGGCAAACGGTCCACATACGACGGCAGTTGTATTTCA
GAGATCTTTTGGATTGCCCTTTGGGCGCCGTTCTGTTCACGGCAGTATTT
CTATAAGGTCGTGCAGCAGCGGCGTCGCTGTCTTCTACATTGGTTCTTCT
GATGACGTGTCAGGACGCCGTAAGCATCGTTTGGGGGGGGAAGACGGGGA
GTGTTGGTCTCCCTCGCGGTTGTTACCTATCATAGAGACCGTCCAGCGTG
ATTCGCATACACGCGTAATCGCTACATCTCACTGCATTTTGGTTGAAGTG
TTGACCCTTTCTATTGTTCCATGGCACGGCAGCTTGCCAAGGCGGCGGCG
GCGGCGACGAAGGAGATAGAGGTCAAAGCCGACATGAAGGCCAAGAAGGA
GGCTGCTGCAGCCGCCACGGCTGTGCAGGCGGCAGAGGACGCCGCCAAGG
CCGCCGTCGCAAAGCGCGAGGCCGACACCGCTGCGGCGGCGAAGCGTGAG
CAAGAGGAGGCGGCCGCTGCGGTAGCGAAGCGTGAGCAAGAGGAGGCGAT
CGCCGCGGCGGCGGAGGTAAAGGCGAAGCTCGAGGCCGAGCAGGCGACGG
CGGCGGCGGAAAAGGCGGCTGCCGAAGCTGCCGCCGTCGCAAAGCGCGAG
CAGGAGGAGGCAGCAGCCGCCGCTGCGGCCGCCGCGGTGGAGGCGAAAGC
GAAGCTGGAAGCTGAGCAGGCGGCTGCGGCTGCAGAAAAGGCTGCCGCTG
ACGCCGCCGCTGTGGCGTTGCGTGAGCAGGAGAAAGCAGCAGCCTTGAAG
GCGGCGGCGGAGGCGAAGGCGAAGCTGGAGGCAGAACAGGCTGCCGCGGC
CGCTGCCGAAGCCGCTGCGGCGCGCGAGGCAGAACAACAGGCGGCTGCAG
CAGCAGCTTTGAAGGCGGAGGCAGAGGCCAAGGAGAAACTCGAACGCGAG
CAGGCGGCATCTGCGCAGAAGGCCGCCGCTGACGCCAAGGCCGCGGAAGA
GGTCAACGCGGCGAAGGTGAAGGCGGAAGCTGCCGCCGTCGCCGAGGCGG
AGGAGCTGCTGGCCAAGGCGGCAGCCGTGGCGGCGGAGCGGGCCGCGGCG
TCTGCCGCCGACGAGGAGGCGCGCCGCAAGGAGATGGAGGAGCGGCAGCA
CGCGCGC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig5982:2233..3589+

>mRNA_P-wetherbeei_contig5982.4.1 ID=mRNA_P-wetherbeei_contig5982.4.1|Name=mRNA_P-wetherbeei_contig5982.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=969bp|location=Sequence derived from alignment at P-wetherbeei_contig5982:2233..3589+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCCGCGGAGGCGGCGGCGGTGGCCGAGGTGGCCCGGCTGGAGAAGCG
GGCGGCAGTGGAGCTGCGCATCAAGGCGGCGCAGGAGGAAGAAGTGCGCC
AGGAGCGCGTCAAGAAGATGGTGGAGGAGGCGCAGGTTAGTGGACTTGCC
AAGGCGGCGGCGGCGGCGACGAAGGAGATAGAGGTCAAAGCCGACATGAA
GGCCAAGAAGGAGGCTGCTGCAGCCGCCACGGCTGTGCAGGCGGCAGAGG
ACGCCGCCAAGGCCGCCGTCGCAAAGCGCGAGGCCGACACCGCTGCGGCG
GCGAAGCGTGAGCAAGAGGAGGCGGCCGCTGCGGTAGCGAAGCGTGAGCA
AGAGGAGGCGATCGCCGCGGCGGCGGAGGTAAAGGCGAAGCTCGAGGCCG
AGCAGGCGACGGCGGCGGCGGAAAAGGCGGCTGCCGAAGCTGCCGCCGTC
GCAAAGCGCGAGCAGGAGGAGGCAGCAGCCGCCGCTGCGGCCGCCGCGGT
GGAGGCGAAAGCGAAGCTGGAAGCTGAGCAGGCGGCTGCGGCTGCAGAAA
AGGCTGCCGCTGACGCCGCCGCTGTGGCGTTGCGTGAGCAGGAGAAAGCA
GCAGCCTTGAAGGCGGCGGCGGAGGCGAAGGCGAAGCTGGAGGCAGAACA
GGCTGCCGCGGCCGCTGCCGAAGCCGCTGCGGCGCGCGAGGCAGAACAAC
AGGCGGCTGCAGCAGCAGCTTTGAAGGCGGAGGCAGAGGCCAAGGAGAAA
CTCGAACGCGAGCAGGCGGCATCTGCGCAGAAGGCCGCCGCTGACGCCAA
GGCCGCGGAAGAGGTCAACGCGGCGAAGGTGAAGGCGGAAGCTGCCGCCG
TCGCCGAGGCGGAGGAGCTGCTGGCCAAGGCGGCAGCCGTGGCGGCGGAG
CGGGCCGCGGCGTCTGCCGCCGACGAGGAGGCGCGCCGCAAGGAGATGGA
GGAGCGGCAGCACGCGCGC
back to top