mRNA_P-wetherbeei_contig5963.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5963.1.1
Unique NamemRNA_P-wetherbeei_contig5963.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5963.1.1 vs. uniprot
Match: A0A139AAI0_GONPJ (Uncharacterized protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139AAI0_GONPJ)

HSP 1 Score: 75.9 bits (185), Expect = 5.360e-13
Identity = 46/104 (44.23%), Postives = 60/104 (57.69%), Query Frame = 3 
Query:  174 GAVLAGHVVLKGAQAGSVIGLATSPAAWLLRGRTEPLWSGTCARFCRRGVGIGAVLGLVAVVGKATQIDKSGIEDRGYRIARSATQIKCDKYSGVGAAGGGVVG 485
            GAVLAGHVV K  QAGSV+GL  +P   L      PL      R    G  +G  LGL A   ++ Q+D  G++DR YRI  +A Q++ D+Y+G GA  G +VG
Sbjct:   26 GAVLAGHVVFKTVQAGSVLGLGLAPLIRLRSKTPRPLLV-ALTRPAGMGTLLGIPLGLAAFAARSYQMDADGVDDRAYRIVNNAGQVEVDRYAGFGAFVGSLVG 128
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BLAST of mRNA_P-wetherbeei_contig5963.1.1 vs. uniprot
Match: A0A150G2Q1_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150G2Q1_GONPE)

HSP 1 Score: 53.9 bits (128), Expect = 3.140e-5
Identity = 38/99 (38.38%), Postives = 52/99 (52.53%), Query Frame = 3 
Query:  192 HVVLKGAQAGSVIGLATS-PAAWLLRGRTEPLWSGTCARFCRRGVGIGAVLGLVAV----VGKATQIDKSGIEDRGYRIARSATQIKCDKYSGVGAAGG 473
            H++ KG QAGSV+G+A   P  +L+R   +P           R +G  A +G  A     V K TQID+ G EDR YR+  +  Q + D +S  GAA G
Sbjct:   22 HIIKKGWQAGSVVGVAAVLPTMYLIRKVRDPT-------ALLRALGYSAAIGTAATGTLGVLKCTQIDQEGFEDRAYRLHYNQGQNRTDAFSAAGAAVG 113
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5963.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A139AAI0_GONPJ5.360e-1344.23Uncharacterized protein n=1 Tax=Gonapodya prolifer... [more]
A0A150G2Q1_GONPE3.140e-538.38Uncharacterized protein n=1 Tax=Gonium pectorale T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5963contigP-wetherbeei_contig5963:587..1662 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002952610.1
Model size869
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.94e-05
EggNOG OGs2D4S3@1|root,2SW3C@2759|Eukaryota
Ec32 ortholog descriptionProtein of unknown function DUF1757
Ec32 orthologEc-20_000560.1
Cds size636
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.3652465-UTR-P-wetherbeei_contig5963:586..5971683186878.3652465-UTR-P-wetherbeei_contig5963:586..597Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5963 587..597 +
1683186878.4027781-UTR-P-wetherbeei_contig5963:1440..16621683186878.4027781-UTR-P-wetherbeei_contig5963:1440..1662Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5963 1441..1662 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186878.376928-CDS-P-wetherbeei_contig5963:597..8571683186878.376928-CDS-P-wetherbeei_contig5963:597..857Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5963 598..857 +
1683186878.389444-CDS-P-wetherbeei_contig5963:1064..14401683186878.389444-CDS-P-wetherbeei_contig5963:1064..1440Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5963 1065..1440 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5963.1.1prot_P-wetherbeei_contig5963.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5963 598..1440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5963.1.1

>prot_P-wetherbeei_contig5963.1.1 ID=prot_P-wetherbeei_contig5963.1.1|Name=mRNA_P-wetherbeei_contig5963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=212bp
MTVADLLACPSPEDYEDMEGMPALPGECIFILCTVINKIAIQMSFLSSFF
LSFKGAVLAGHVVLKGAQAGSVIGLATSPAAWLLRGRTEPLWSGTCARFC
RRGVGIGAVLGLVAVVGKATQIDKSGIEDRGYRIARSATQIKCDKYSGVG
AAGGGVVGLVAGVSMGAAACQGLGLGVLAYIGETAWRKSAAAAAVSGEGD
GGSGVSSSSST*
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mRNA from alignment at P-wetherbeei_contig5963:587..1662+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5963.1.1 ID=mRNA_P-wetherbeei_contig5963.1.1|Name=mRNA_P-wetherbeei_contig5963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1076bp|location=Sequence derived from alignment at P-wetherbeei_contig5963:587..1662+ (Phaeothamnion wetherbeei SAG_119_79)
AGTCCGAAAACATGACCGTCGCCGATCTGCTGGCATGCCCAAGCCCGGAG
GACTACGAAGACATGGAAGGGATGCCCGCTTTACCGGGTGAGTGCATTTT
TATTCTATGCACCGTGATCAACAAGATTGCGATTCAAATGTCCTTTCTGT
CCTCTTTCTTCCTTTCGTTCAAAGGCGCCGTCCTCGCCGGGCACGTCGTC
TTGAAGGGCGCGCAGGCGGGCTCAGTCATCGGACTGGCCACATCTCCAGC
GGCTTGGCTCCTTCGGGGGAGGTGAGGAGATAGATGCACCTGGAAGGAGA
GTTGGCGCGATCGCCTCAACGTAAAGGCTCTCCTTCTTCCTCTTGCCCGT
CTTCTTCTCTAACTTGCTCCTCCGTCTGCCTCTCATTTCGTCGTCCAAAT
CGTGGGGTATGTCATCCCGCCAATTCAACCCCGCATACCCGCCGTCTCAA
CCCGCACACCATCGCCTTCACAAAACAGGACGGAGCCGCTGTGGAGCGGC
ACGTGCGCCCGCTTCTGCCGGCGCGGCGTCGGCATCGGCGCCGTCCTTGG
CCTCGTCGCCGTCGTCGGCAAGGCAACGCAGATCGACAAGTCCGGCATCG
AAGACCGCGGCTACCGCATCGCCCGCAGCGCTACCCAGATCAAGTGCGAC
AAGTACTCGGGCGTCGGCGCTGCCGGCGGCGGGGTTGTCGGACTCGTTGC
AGGCGTATCGATGGGCGCCGCTGCCTGCCAGGGCCTTGGATTGGGCGTGC
TGGCGTACATCGGCGAGACGGCATGGAGGAAAAGCGCCGCTGCGGCCGCA
GTGAGCGGAGAAGGCGACGGCGGCAGCGGTGTTTCGAGTAGCAGCAGCAC
GTGATTTTGACTCCTCGGGGGAGAGAGCACATCTACTTTTTATTGGGGTT
TGGCCGGCTTGTAAGGGAAAAATTGGCGTGAGAGTCGCGGGGAGAAATGG
AAGTGAAGAATAGCCAGAGGTTGGGAGAGCAACATTGCGGGATCATGGTA
AGTAGACGGTTCTTTCTGAGCGACTGTTTTTGAGGAGAGAGGTATCTGTT
GCATTGTAAGAAAACGGGTCATAGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5963:587..1662+

>mRNA_P-wetherbeei_contig5963.1.1 ID=mRNA_P-wetherbeei_contig5963.1.1|Name=mRNA_P-wetherbeei_contig5963.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=636bp|location=Sequence derived from alignment at P-wetherbeei_contig5963:587..1662+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGTCGCCGATCTGCTGGCATGCCCAAGCCCGGAGGACTACGAAGA
CATGGAAGGGATGCCCGCTTTACCGGGTGAGTGCATTTTTATTCTATGCA
CCGTGATCAACAAGATTGCGATTCAAATGTCCTTTCTGTCCTCTTTCTTC
CTTTCGTTCAAAGGCGCCGTCCTCGCCGGGCACGTCGTCTTGAAGGGCGC
GCAGGCGGGCTCAGTCATCGGACTGGCCACATCTCCAGCGGCTTGGCTCC
TTCGGGGGAGGACGGAGCCGCTGTGGAGCGGCACGTGCGCCCGCTTCTGC
CGGCGCGGCGTCGGCATCGGCGCCGTCCTTGGCCTCGTCGCCGTCGTCGG
CAAGGCAACGCAGATCGACAAGTCCGGCATCGAAGACCGCGGCTACCGCA
TCGCCCGCAGCGCTACCCAGATCAAGTGCGACAAGTACTCGGGCGTCGGC
GCTGCCGGCGGCGGGGTTGTCGGACTCGTTGCAGGCGTATCGATGGGCGC
CGCTGCCTGCCAGGGCCTTGGATTGGGCGTGCTGGCGTACATCGGCGAGA
CGGCATGGAGGAAAAGCGCCGCTGCGGCCGCAGTGAGCGGAGAAGGCGAC
GGCGGCAGCGGTGTTTCGAGTAGCAGCAGCACGTGA
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