mRNA_P-wetherbeei_contig595.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig595.3.3
Unique NamemRNA_P-wetherbeei_contig595.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A835YZN2_9STRA (HAD-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZN2_9STRA)

HSP 1 Score: 271 bits (694), Expect = 1.180e-82
Identity = 135/264 (51.14%), Postives = 179/264 (67.80%), Query Frame = 2
Query:  164 SSEIVRRKSEEIVLRPLTAPKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAA---AYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLP-IEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQPPFEEDRDDVSLVSVS 943
            +  +VR   +E+ +    APKL+TFDAEGTL+QL +P+GL  RE+LL+AH Y  RLPGP  F+ + AA   A  AA    PCYGCG GV+SHQWWY V+        E  N+P  E++  V +ELFD+LFYE F GPEA+EL       LE+L  WR++G GP+LG+++NADERL T+L NLGIL+ FDFV+TSR+IG E P+R +FDVAL +AG+T   EALHCG+DL  D+  A  AGWQ+C I  PP  +     +++ +S
Sbjct:    6 AGRLVRAGVQELAVPLPPAPKLITFDAEGTLLQLASPKGLILRESLLKAHGYLARLPGPDLFQASHAAYDKALNAATAAQPCYGCGTGVTSHQWWYGVVYDALVETLEAHNIPPSEMVDPVMEELFDELFYETFTGPEAYELRPDAARTLEKLAEWREAGTGPLLGIVTNADERLPTVLLNLGILEVFDFVLTSRQIGSELPARAIFDVALDKAGLTNAAEALHCGDDLERDIGGAAAAGWQSCLIANPPAPQGPQAYTVMGIS 269          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A7S2G2K6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G2K6_9STRA)

HSP 1 Score: 221 bits (562), Expect = 1.850e-62
Identity = 111/251 (44.22%), Postives = 159/251 (63.35%), Query Frame = 2
Query:  158 ASSSEIVRRKSEEIVLRP--LTAPKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQPPF 904
            A +SEI+       VL P     P+L+TFDA GTLIQL  P G+ YR+ L++     +RLP P  F DAF   Y A  + SPC+GC   +S+  WW +V++  Y +V     +P +++  +   LFD+L++EVF G + WEL     +VL++L+ W+++G+GP LGV+SN DERL  +L+ LGI DYFD ++TS+E G EKP RQ+FD+ALTR GI     A+H GND   DV  A  AGW A ++++P +
Sbjct:   68 AGASEIMLTSEPAGVLPPPITQKPQLITFDATGTLIQLAEPVGMHYRQVLMKHTG--IRLPRPDIFTDAFKEVYDAKCQASPCFGCSDSISAQDWWASVVRDTYTKV----GVPSDIIDPLFPLLFDELYHEVFTGTDGWELNADTMMVLDKLKEWQETGDGPRLGVISNFDERLPKLLEALGIADYFDIIITSKECGMEKPCRQIFDIALTRLGIYERDAAVHVGNDYDTDVKGATAAGWNALYVKEPAY 312          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 191 bits (485), Expect = 4.000e-51
Identity = 103/234 (44.02%), Postives = 141/234 (60.26%), Query Frame = 2
Query:  212 LTAPKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSG--EGPV-LGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQPPF 904
            +  P+++TFDA GTL+QLT P G+ YREALL+A    +RLP P  F+ AF   Y A     PC+GCG  + S  WWY V++  Y +      +P ++L  +  E+FD L+  VFAG E WEL      VL+ L   ++S   + P+ LGV+SN DERL  +LDNLGI  YFD V+TS+E   EKP+  +FD+AL+R GI     A+H G+    DV  A  AGW A  ++ PP+
Sbjct:   98 ILTPRVVTFDATGTLMQLTEPVGMHYREALLQASG--LRLPSPDHFDAAFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKT----GVPEKILDPLLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDDPLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRSRAVHIGDTFDKDVAGAARAGWNAIFVRAPPY 325          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 184 bits (467), Expect = 2.110e-48
Identity = 102/234 (43.59%), Postives = 137/234 (58.55%), Query Frame = 2
Query:  221 PKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCE---EFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQPPFEED 913
            P+L+TFDA  TLIQL +  G+ YR  L  A ++  RLP P  F  AF  A+       PC+GCG G++S +WW    ++ YA V     E  L   +   + D + + L+ +VFA  EAWEL       L R + WR+ G GP L VLSN DERL +ILD +G+ D FDFV+TSREIG EKP+R  F+VA++RAG+  P   +H G+    DV+ A +AGW +  I  PP   D
Sbjct:   89 PQLITFDATDTLIQLKSEVGMTYRLILHEATRFRSRLPTPAVFTSAFNQAFTETNEKYPCFGCGLGMTSREWWAECTKRTYALVEHIDYERGLRDRMDGPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMWREEG-GPQLAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPSLCMHVGDGFDSDVVGASNAGWHSVWI--PPINGD 319          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: D8LIY6_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY6_ECTSI)

HSP 1 Score: 183 bits (465), Expect = 4.340e-48
Identity = 91/225 (40.44%), Postives = 135/225 (60.00%), Query Frame = 2
Query:  221 PKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQ 895
            P+L+TF A G L     P GL  REAL R+H Y  R+P P AF+  F  ++  A    PCYG    +SS  WW++V    Y +   EF +  +++ +  DEL D+L+YE+  GPEA+E+     VVL+RL AWRD+  GP L V+++ D+RL  +L+NLG+L YFDFV+TSRE G E     M+++AL  AG+   ++ LH G     D+  + + G +A  +++
Sbjct:  105 PELVTFSAYGVLYNWHLPMGLLMREALGRSHNYIHRMPPPGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDELVDELYYEITVGPEAFEVMPLVKVVLDRLAAWRDNEGGPKLAVVADDDDRLHVVLENLGLLPYFDFVLTSRETGYEPRETNMYEIALETAGVKRAKKGLHVGCKYETDITGSCETGMEAVSVKR 329          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A6H5JZ79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ79_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.680e-47
Identity = 91/225 (40.44%), Postives = 136/225 (60.44%), Query Frame = 2
Query:  221 PKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQ 895
            P+L+TF A G L     P GL  REAL R+H Y  R+P P AF+  F  ++  A    PCYG    +SS  WW++V    Y +   EF +  +++ +  D+L D+L+YE+  GPEA+E+     VVL+RL AWRD+  GP L V+++ D+RL  +L+NLG+L YFDFV+TSRE G E     M+++AL  AG+   ++ LH G     D+  + +AG +A  +++
Sbjct:  239 PELITFSAYGVLYNWHLPMGLLMREALGRSHNYVHRMPPPGAFQKHFKESHEDAAYHIPCYGAHENMSSWDWWFHVFTDAYLKTINEFYMDEDIVLDKIDDLVDELYYEITVGPEAFEVMPLVKVVLDRLAAWRDNEGGPKLAVVADDDDRLHVVLENLGLLPYFDFVLTSRETGYEPRETNMYEIALETAGVKQAKKGLHVGCKYETDITGSCEAGMEAVSVKR 463          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 184 bits (467), Expect = 3.830e-47
Identity = 113/251 (45.02%), Postives = 143/251 (56.97%), Query Frame = 2
Query:  194 EIVLRPLTAPKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTE---------VQDELFDDLFYEVFA-GPEA--WELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVP-------REALHCGNDLMLDVLAAKDAGWQACHI 889
            E+V      PKL+TFDA GTL+QL +  G+ YR+ LL  H   +RLP P  F  AF  AYA+  +  PC+GCG G++S  WW  VMQ  Y  V   F +  E + E         V + LF DL++ +FA GP    WEL      VL+ LR+    G G  LGVLSN D+RL  IL++LGI  YFDFV+TSRE G EKPS+ MFD+A    G++         RE LH G+ L  DV  A DAGWQ+  I
Sbjct:  269 EMVPTAKPRPKLITFDATGTLMQLRSHIGVIYRDTLLE-HATTLRLPRPDVFSIAFKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEEVAEAGGMESKEEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRSAESCG-GLRLGVLSNFDDRLPGILESLGIAKYFDFVLTSREAGQEKPSQVMFDLARNALGLSADGSGPIETRECLHAGDTLGTDVRGALDAGWQSAFI 517          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: W7TTJ7_9STRA (Haloacid dehalogenase-like hydrolase domain containing 3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TTJ7_9STRA)

HSP 1 Score: 159 bits (403), Expect = 1.470e-39
Identity = 93/253 (36.76%), Postives = 140/253 (55.34%), Query Frame = 2
Query:  149 EAFASSSEIVRRKSEEIVLRPLTAPKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACHIQQPPFE 907
            E  A  S +     E   +RP+  P+L+T +A G LI+ T   GL +RE  ++ + Y VRLP P+ F  AF  AY A     P +G   G+S+ +WW  +  + +  V      P E L EV   +F++L+YE      AWE       ++++L+ WR  G GP LGV+ + DERL+TIL+NL IL YFD VV+SRE G  KP  + F +A+ +AG+  P++ +H G +   DV+ A  AG  +  +  P ++
Sbjct:   92 EEEAEESTLAGEAVEAPPVRPV--PELITMNAFGLLIEPTDEVGLFFREVFMKHYDYKVRLPRPERFTVAFDKAYDARRSEYPNFGAKAGMSAEEWWAPIFYKTFLDV----GFPKEDLDEVFVGVFEELYYESLTSEWAWETVDDVLPMMDKLQEWRMQG-GPKLGVICDYDERLITILENLDILHYFDVVVSSRESGAGKPDPRPFLLAMEKAGVKDPKKVMHLGRNFDHDVVGAAAAGMDSMWVVMPSYD 337          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A7S2RCE0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RCE0_9STRA)

HSP 1 Score: 135 bits (339), Expect = 3.060e-32
Identity = 76/182 (41.76%), Postives = 105/182 (57.69%), Query Frame = 2
Query:  218 APKLLTFDAEGTLIQLTAPRGLQYREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARV-CEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDSGEGPV-LGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKP 757
            +PKL+T DA   LIQ  A  G  +R+ L  A  Y  RL  P+ +  AF  AY   +   PC+G   G++S QWW  V Q+ YA V   E  L  E+   + +++FD LF++VF   EAWE+       L  ++ WR+  +GP+ L +LSN DERL  IL+ L ++D FDFV+TSREIG   P
Sbjct:   64 SPKLITIDAFDILIQTRAEMGWFFRDVLHEATDYNARLVAPEHYTKAFHTAYKEVDDDMPCFGVKDGITSRQWWKIVTQKTYAYVDLTEPGLREELDEWLLEDVFDVLFHDVFMTEEAWEIKPGALEALSYMKKWREEEQGPMALAILSNYDERLHAILEQLDLIDAFDFVLTSREIGSPMP 245          
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT)

HSP 1 Score: 137 bits (345), Expect = 3.820e-32
Identity = 91/246 (36.99%), Postives = 125/246 (50.81%), Query Frame = 2
Query:  215 TAPKLLTFDAEGTLIQLTAPRGLQYREAL--------------LRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQWWYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRHCGVVLERLRAWRDS---GEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSREIGCEKPSRQMFDVALTRAGITV----PREALHCGNDLMLDVLAAKDAGWQACHI 889
            T P+L+TFDA GTL+++  P G  YR+AL              L A +       P A   AF  AYAA     PC+G G  +SS  WW +V+++ +           E +   +  L     YE FA    WEL      V+++L  WR     GE   +GV+SN D+RL  +L++LG+  YFDFV+TSRE G EKP R +F+ A  RAG+      PR  +H G+    DVL A  AGW+A  +
Sbjct:    8 TRPRLVTFDATGTLMRVQRPVGAIYRDALISSLSASKLARTADLSAAELAACNVDPVAIGRAFGRAYAAQCAAHPCFGAG-SLSSRDWWSSVVREAFVGAGVS-----EAVVRAEMPLLFPTLYESFASTATWELLDASAGVVQQLARWRAQLPPGE-LTIGVISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFV 246          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig595.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YZN2_9STRA1.180e-8251.14HAD-like domain-containing protein n=1 Tax=Tribone... [more]
A0A7S2G2K6_9STRA1.850e-6244.22Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2STH1_9STRA4.000e-5144.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PCP1_9STRA2.110e-4843.59Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
D8LIY6_ECTSI4.340e-4840.44Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
A0A6H5JZ79_9PHAE2.680e-4740.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7R9U3B9_9STRA3.830e-4745.02Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
W7TTJ7_9STRA1.470e-3936.76Haloacid dehalogenase-like hydrolase domain contai... [more]
A0A7S2RCE0_9STRA3.060e-3241.76Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8J5XU42_DIALT3.820e-3236.99Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig595contigP-wetherbeei_contig595:2702..5876 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LT61
Preferred nameHDHD3
PFAMsHAD_2,Hydrolase,Hydrolase_like
Model size1958
Max annot lvl2759|Eukaryota
KEGG koko:K07025,ko:K11853
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
Exons4
Evalue8.02e-29
EggNOG OGsCOG1011@1|root,KOG3085@2759|Eukaryota
EC3.4.19.12
DescriptionN-acylneuraminate-9-phosphatase activity
Cds size987
COG categoryP
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig595.3.3prot_P-wetherbeei_contig595.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig595 3537..5740 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.7019887-UTR-P-wetherbeei_contig595:2701..35361683186877.7019887-UTR-P-wetherbeei_contig595:2701..3536Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig595 2702..3536 -
1683186877.7835765-UTR-P-wetherbeei_contig595:5740..58761683186877.7835765-UTR-P-wetherbeei_contig595:5740..5876Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig595 5741..5876 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.7186959-CDS-P-wetherbeei_contig595:3536..39051683186877.7186959-CDS-P-wetherbeei_contig595:3536..3905Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 3537..3905 -
1683186877.739544-CDS-P-wetherbeei_contig595:4374..46111683186877.739544-CDS-P-wetherbeei_contig595:4374..4611Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 4375..4611 -
1683186877.7577503-CDS-P-wetherbeei_contig595:4933..50691683186877.7577503-CDS-P-wetherbeei_contig595:4933..5069Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 4934..5069 -
1683186877.772878-CDS-P-wetherbeei_contig595:5495..57401683186877.772878-CDS-P-wetherbeei_contig595:5495..5740Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig595 5496..5740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig595.3.3

>prot_P-wetherbeei_contig595.3.3 ID=prot_P-wetherbeei_contig595.3.3|Name=mRNA_P-wetherbeei_contig595.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=329bp
MADREAFASSSEIVRRKSEEIVLRPLTAPKLLTFDAEGTLIQLTAPRGLQ
YREALLRAHKYYVRLPGPQAFEDAFAAAYAAAERTSPCYGCGRGVSSHQW
WYNVMQQMYARVCEEFNLPIEVLTEVQDELFDDLFYEVFAGPEAWELTRH
CGVVLERLRAWRDSGEGPVLGVLSNADERLVTILDNLGILDYFDFVVTSR
EIGCEKPSRQMFDVALTRAGITVPREALHCGNDLMLDVLAAKDAGWQACH
IQQPPFEEDRDDVSLVSVSVPRFSPFSLVFRLICLFTCRCGTFGLLFLFA
EFSLSRANLASTLLDTANISWGLPVFAY*
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mRNA from alignment at P-wetherbeei_contig595:2702..5876-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig595.3.3 ID=mRNA_P-wetherbeei_contig595.3.3|Name=mRNA_P-wetherbeei_contig595.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=3175bp|location=Sequence derived from alignment at P-wetherbeei_contig595:2702..5876- (Phaeothamnion wetherbeei SAG_119_79)
CGGGCGCTTGATTTGCAGAGCGGCGGCGTCCGTGGCGGCGATTGTGGTGT TGGGAGGATGGCCTGGGGCGGCGGGGTTCATCCCTCCTACTGTGGTGCGA CAAACGCGCTTGGCGGCGCAGGCAATAACGACGGGGATGGCTGATCGGGA GGCGTTTGCGAGCTCGAGCGAAATCGTACGACGAAAGAGCGAGGAGATCG TCCTGAGACCGCTGACCGCGCCAAAGCTTCTCACTTTTGACGCAGAGGGG ACTCTGATTCAACTGACGGCGCCGCGCGGCCTTCAGTACCGGGAAGCGCT CCTCCGCGCGCACAAGTATTACGTGCGCTTACCAGGACCGCAGGCCTTCG AGGACGCGTTCGCAGCGGCATATGCAGCAGCGTGAGTCCCGTGGCAACTT GTACAGCATGTTCTTTCCCCTTGTCTCTCGTGTTGCTTGTTTGTGGCCGC GTAAGTCATCTTGTAGAGAATCATCTCGCCTAGCTTTGCGGCTTTTTCGC TTTGTCTGGAAGAGGACAACGTTGTTTTCTGGTTTTCGGTGCGTCCTTGT TTGATGGTGGTCTTTCATGCGCGAACGTCTTTATTTTTCCATGAGTGCAC GAAACTGCTGCAGATATCGAGCGCTGGTGCTTTCTTGTTCTCCCTTTCGG CTGTTGAAGCCTCTGCTTCCCTCCTTTTCTCTCGTGGTCCACTGCTCTTC CTATTCCAATTCTACTCCTCCACAATAACAAAATCGCTCATCTTAACCGC CGATTGAACCGCCAAAATCGCCGCCTGACGTCCAAAACGAACAAACGACG CAAACAGGGAGCGGACGAGCCCGTGTTATGGGTGCGGGCGGGGCGTGTCA TCGCACCAGTGGTGGTACAACGTCATGCAGCAAATGTATGCCCGCGTCTG CGAGGAATTCAACCTCCCCATCGAGGTCCTCACCGAGGTCCAGGTCAGTC ACTTTCGATCCTCTGGTTCCTTTGGATTGGCTGGTTGTTTTCTTAGTTGG GTTTTTCAAAAATAGGTTTTCAGGAACGGGCGGTGGTTCTGGCGGCCAGT CTTTGTTAACACCTTTAGTCCAGACCGCTGGCGTCCTCCACGACGTCACC CTATTGGCAGCTTTCGTACTGTTTTAGCGTCTATTAGTTCTCCTCATATC GCGGGGTTTCTAGCGCTCTCATATCCTGCGCACATAACTGCTTCCCGCCC CTATCCTCACGTGCCGTTCTTTCCGTTTACTTGGAATTGAACGAATCGCT TTGATCATGCACCAGGACGAGCTGTTCGACGACCTGTTCTACGAAGTGTT CGCGGGGCCCGAGGCGTGGGAGCTGACGCGGCACTGCGGCGTCGTGCTGG AGCGGCTGCGGGCGTGGCGCGATTCCGGTGAAGGACCTGTGCTGGGCGTC CTGTCCAACGCCGATGAGCGTCTCGTGACCATCCTCGACAATCTGGGCAT CCTCGACTACTTCGACTTTGTGGTCACCTCCAGGGAGATCGGCTGCGAGA AGGTCAGCGCGTGGGACGGTGAAGGTTTCGAGGACAATACTTCTTTCAGA TTACAACGGTAGTGGCCTGCTCTGCTCTTTCTGCGGAAAGGGCACTGTGG CCTGTCCTGCCTTTTTGAATAAGAAACGAGAGCTGTGCGCTCGAAGGTGT AATAGACGGTCTCGAGCGGCAGTTTGTTGAAGCTGGTTGCGTTGCCCAAC CACTCCCCAGGCTCAGTTCTGTCGGCGTTTATGTGCTGGGCACCAGTAGG AGGGATCGGGACGTGACCTCCAAGGCGTTCCTTTCGTAGAGTGGAAGTGA TTCCGATGCAGTCTTCTTTTCTTCTTCTGGTATTTTGTGTCGTTTTGCAT GCGAAACTGATTTTGACGTTCCCTTGTCTTCCCGGCCTGACGTTGCTGGT CTTTACGGATCTGCGGGGTCGGCGTATCCGACCTGCACAAACTGCAAAAC ACACGCATTAACCACCAACAGCCGTCACGTCAGATGTTTGACGTGGCGCT GACGCGGGCAGGCATCACAGTGCCGCGGGAGGCGCTGCACTGCGGCAACG ACCTGATGCTGGACGTGCTGGCGGCCAAGGACGCCGGCTGGCAGGCCTGC CACATCCAGCAGCCCCCCTTCGAGGAGGATCGCGACGACGTCAGTCTAGT TTCTGTTTCTGTTCCTCGTTTCTCGCCTTTTTCCCTCGTATTTCGGCTTA TTTGCCTGTTCACTTGTCGTTGTGGTACCTTTGGTCTGTTGTTTTTGTTT GCCGAATTTTCCCTGTCTAGAGCGAATCTTGCTTCCACACTGCTTGATAC TGCGAACATTTCCTGGGGCCTTCCAGTTTTTGCATACTAAGATCACATTC CTTTCATGCGTTTGGGGTTTCAAGTCCCCTTTTCTGGTTCGGCGTCCTCC CTTTGCCTTTTGCCGTCATTAATCACGCTCCTCACCGCCATGCTCTCACC GCCCCGTTCTTCTCCCTTTCCTTGCGTAACCGAAACGGCAGCTGGGCCGC GGCTTTCTGCGATCCGCCGGCCTGGGAGGGCTGCTTCCGCTGTTGGGGCA GATGCCCGTGTCCGGCCCCATCGCCACTACTCGGCCACGCGGCCAGTTCA CCGATGGGGACTAGAAGCGGTGTAGAAAAGCCAGTCAATTCTAGCGTTGG CGGTTTGGCCGAGGGCCGAGAAGTTGACATGACCGTGGCGAAATAGGGGA AGCAGTGGTGGCAGGGGTTGCTTTGCTTGACAGCTCCTGCATACATGCAC TGAGGAAGCTGCTTGGCGACTTTTGCCTGGATGCGGCGGCGGCAAGACCT TGCACGTGCGGCGCTGGCCGGCCTTTCGACCTGTGAAACAATGCCTAGCG GTGGAAAGAAAAGGACAAGAAAACGGAGAGTCCATACGAGGCCATCGATT CCTCAAAGACAGCTAGCGGCAGCGGCTGGGGCAGCGTCGCCATGCGCCGT CCTGCTGCAGGCTTCTCGCTGGTATCACACACGGGCGTTTCGGCGCCGTG CATAGCGAGTGAGTGGGAGAGTGAGCGGTTCCGGCGGCAGCGTCGGAATT GCAGGGAAGGGCGAACGGCGGCGGCAGCGGCAACGGCTCAGGCTGATTGC CCCCATCTAACTGTCAGGGAGTAATAGATAGTCGGCCGACAAGTTGTCAT AAACAAGATTGAAACATTAATCGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig595:2702..5876-

>mRNA_P-wetherbeei_contig595.3.3 ID=mRNA_P-wetherbeei_contig595.3.3|Name=mRNA_P-wetherbeei_contig595.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=987bp|location=Sequence derived from alignment at P-wetherbeei_contig595:2702..5876- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGATCGGGAGGCGTTTGCGAGCTCGAGCGAAATCGTACGACGAAA
GAGCGAGGAGATCGTCCTGAGACCGCTGACCGCGCCAAAGCTTCTCACTT
TTGACGCAGAGGGGACTCTGATTCAACTGACGGCGCCGCGCGGCCTTCAG
TACCGGGAAGCGCTCCTCCGCGCGCACAAGTATTACGTGCGCTTACCAGG
ACCGCAGGCCTTCGAGGACGCGTTCGCAGCGGCATATGCAGCAGCGGAGC
GGACGAGCCCGTGTTATGGGTGCGGGCGGGGCGTGTCATCGCACCAGTGG
TGGTACAACGTCATGCAGCAAATGTATGCCCGCGTCTGCGAGGAATTCAA
CCTCCCCATCGAGGTCCTCACCGAGGTCCAGGACGAGCTGTTCGACGACC
TGTTCTACGAAGTGTTCGCGGGGCCCGAGGCGTGGGAGCTGACGCGGCAC
TGCGGCGTCGTGCTGGAGCGGCTGCGGGCGTGGCGCGATTCCGGTGAAGG
ACCTGTGCTGGGCGTCCTGTCCAACGCCGATGAGCGTCTCGTGACCATCC
TCGACAATCTGGGCATCCTCGACTACTTCGACTTTGTGGTCACCTCCAGG
GAGATCGGCTGCGAGAAGCCGTCACGTCAGATGTTTGACGTGGCGCTGAC
GCGGGCAGGCATCACAGTGCCGCGGGAGGCGCTGCACTGCGGCAACGACC
TGATGCTGGACGTGCTGGCGGCCAAGGACGCCGGCTGGCAGGCCTGCCAC
ATCCAGCAGCCCCCCTTCGAGGAGGATCGCGACGACGTCAGTCTAGTTTC
TGTTTCTGTTCCTCGTTTCTCGCCTTTTTCCCTCGTATTTCGGCTTATTT
GCCTGTTCACTTGTCGTTGTGGTACCTTTGGTCTGTTGTTTTTGTTTGCC
GAATTTTCCCTGTCTAGAGCGAATCTTGCTTCCACACTGCTTGATACTGC
GAACATTTCCTGGGGCCTTCCAGTTTTTGCATACTAA
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