mRNA_P-wetherbeei_contig5944.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5944.1.1
Unique NamemRNA_P-wetherbeei_contig5944.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5944.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5944contigP-wetherbeei_contig5944:261..2455 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1431
Hectar predicted targeting categoryother localisation
Exons3
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.329579-CDS-P-wetherbeei_contig5944:260..4581683186877.329579-CDS-P-wetherbeei_contig5944:260..458Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5944 261..458 +
1683186877.3491545-CDS-P-wetherbeei_contig5944:720..8461683186877.3491545-CDS-P-wetherbeei_contig5944:720..846Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5944 721..846 +
1683186877.361477-CDS-P-wetherbeei_contig5944:1348..17501683186877.361477-CDS-P-wetherbeei_contig5944:1348..1750Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5944 1349..1750 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.37279-UTR-P-wetherbeei_contig5944:1750..24551683186877.37279-UTR-P-wetherbeei_contig5944:1750..2455Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5944 1751..2455 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5944.1.1prot_P-wetherbeei_contig5944.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5944 261..1750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5944.1.1

>prot_P-wetherbeei_contig5944.1.1 ID=prot_P-wetherbeei_contig5944.1.1|Name=mRNA_P-wetherbeei_contig5944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=242bp
IVVVTFHPLHKDSSHAAAAAVDLAAQVEGEEATPPPTPATTFAPTSSSFD
MTPVPTPAIEAPQPTKVPNKSRVEYCLQKGCNGGMAAVAMAWDDAKAKLL
MGCLEDAQANKTAAAACFGPPTDLAGKILDLYNCGGCSDCFPAAVNATVC
NAIPKAGYGGQAGVYAPPAGGVAGGSYGGDYGHWAGGGGGAAAPGAAAPQ
PTAGWSDWTHWMPAVATPEPTPELTPKPTSAATSATTPDAA*
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mRNA from alignment at P-wetherbeei_contig5944:261..2455+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5944.1.1 ID=mRNA_P-wetherbeei_contig5944.1.1|Name=mRNA_P-wetherbeei_contig5944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2195bp|location=Sequence derived from alignment at P-wetherbeei_contig5944:261..2455+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGGTGGTGACCTTCCATCCTCTTCATAAAGATTCAAGCCATGCCGC
GGCTGCAGCCGTCGATCTAGCCGCACAAGTGGAGGGGGAAGAAGCCACGC
CTCCTCCGACGCCAGCGACAACGTTTGCTCCGACCTCGTCTTCGTTCGAC
ATGACGCCTGTCCCAACGCCGGCAATAGAGGCGCCGCAGCCGACAAAGGT
TAGATGCGAAAGCTTGTTCGGTGGCGTGCAGCTGTTGAATCCAAATATGG
AGATTCTCTGTGCTTAGCATTTGCAGGCCATTAGAAGAGGCGTTATTTTG
CGCCCATGTTTCAAAGTAATGTATCTGAGAGCCTTGGCCTTGTTCTTCTA
CCTCCCTGCTGCATAGGGTTGCCACCTACCGACTTCACTGCGTTGAAACT
GCTGACGCTTCGCGCTGTCCCGACTGCACAACAAACCAACTGAAACGGCG
GCAACCCCAGGTGCCCAACAAGAGCCGCGTGGAATACTGCCTCCAGAAGG
GTTGCAACGGCGGCATGGCGGCGGTCGCCATGGCATGGGACGACGCCAAG
GCCAAATTGCTAATGGGCTGCTTAGAGGACGCACAGGCACGTTTCGAGAA
ATTCTACTAATGTAGACGTGTCCTTCCCTTTTGTTTTGAAGAGGAATTTG
GCTTAGTTTTCAATCAAGTGTCTGGGGCCCTTGGGGCCCTTTTTGACTTG
TTGGGCCATTAGAAGAGGAAATCTTAGGCTTGAAACTTGTTGCTTTGCTC
GCTGCTGCGAGCAATTAGACAACCATGACTGCGGAAAACCTCTTGAATGG
CTCGTGCTGTCCTTGGTTTCGCTCTGCATACTTATTACCCTCCTGATCTT
GACCTTATCTCGGTTGGTGCATCGCCAGACGTTTTGTGGCCGAGGCGTAT
CAGCGAACCCGAATGGACTGTAGCATCCACCCGCGAAGAAAGAATCGCGT
TCAATTTCCTGCATCGTTCTAAGTTTGCTCCAGGAACTCGACACTATGAT
TGGACCGCCGAAGAGTATGCTCCTCCTTCTCCTCCCCACCCGGCCGCACG
ACGTACTGCACGGCAACCGACGACGAAATGAAAAACAGGCGAACAAGACG
GCGGCCGCCGCGTGCTTCGGCCCGCCGACCGACCTCGCGGGCAAGATACT
CGACCTCTACAACTGCGGCGGGTGCAGCGACTGCTTCCCGGCCGCCGTCA
ACGCGACCGTGTGCAACGCCATCCCCAAGGCCGGCTACGGCGGCCAGGCC
GGAGTGTATGCACCGCCTGCCGGCGGCGTGGCCGGAGGATCCTACGGTGG
CGATTATGGCCACTGGGCCGGTGGCGGCGGCGGCGCGGCGGCACCCGGTG
CAGCGGCACCGCAGCCGACCGCCGGGTGGAGCGACTGGACGCACTGGATG
CCCGCGGTCGCGACGCCGGAGCCGACACCGGAGCTGACGCCGAAACCGAC
ATCGGCAGCGACCTCGGCGACCACGCCGGACGCGGCGTAGGTGCAATAGC
AGTAAAGGAGAAAAGCTTTTCTGGCAGGGCGTATTTTCTTGCCCTAGAAA
GGTCACTTGACTTTTTTGGCCAGGCGGCCCTGGCGTTGCCCCGCCGGAGG
CCTCTGCGCGCAAGGATGGGAATCTTCTCATCTCGTACCGTGGAGGCTCA
GGGTGCGGCTTAGATTCGTGTCTTGTCTTGGACAGTTCGGATGTAAAGTG
GTGGCGGCAGGCGGCGGCGGCAGGCAGTGCTGGCGCCGGCAGCAGATGGG
TGGTCGACTTGCCGCTCCTCTCTTGCTGAGGGCACTGTTGGGAAGAGTTG
GTGAATCAATGGACCCTCGAGGCTAGCCTCCTCATACTTTTGTCATCTTC
AGATAGTCCGCCTGTGGTTGGCGGGTGTGTCACCATGGTAGAAGGAGCGG
AACTGGAAATGTCCCGTTCTCGGCGCTTTGGATGCGTCTTCACGTGCAGC
GGGCGAGTCGTTTAGCGCTCCAAGTCAACATCGGTGATCTTTTTTAATTA
ACGACGGCGGTGGTGGCAGCGACGATGGCGGCGGTAACGCGGCGACTGCG
GGGCCGCAATGTGTTCGTGGCGGGGTAACGTGCTCTTCCTATAGGCTCAG
GTAAAACCTTTTGAGTCAATGGGACCGTTATACATACACCTACCACATCG
GCATCCCAGACCAGGAGGGCTCTCGTAACAAAGCGCTATAGCATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5944:261..2455+

>mRNA_P-wetherbeei_contig5944.1.1 ID=mRNA_P-wetherbeei_contig5944.1.1|Name=mRNA_P-wetherbeei_contig5944.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=726bp|location=Sequence derived from alignment at P-wetherbeei_contig5944:261..2455+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGTGGTGGTGACCTTCCATCCTCTTCATAAAGATTCAAGCCATGCCGC
GGCTGCAGCCGTCGATCTAGCCGCACAAGTGGAGGGGGAAGAAGCCACGC
CTCCTCCGACGCCAGCGACAACGTTTGCTCCGACCTCGTCTTCGTTCGAC
ATGACGCCTGTCCCAACGCCGGCAATAGAGGCGCCGCAGCCGACAAAGGT
GCCCAACAAGAGCCGCGTGGAATACTGCCTCCAGAAGGGTTGCAACGGCG
GCATGGCGGCGGTCGCCATGGCATGGGACGACGCCAAGGCCAAATTGCTA
ATGGGCTGCTTAGAGGACGCACAGGCGAACAAGACGGCGGCCGCCGCGTG
CTTCGGCCCGCCGACCGACCTCGCGGGCAAGATACTCGACCTCTACAACT
GCGGCGGGTGCAGCGACTGCTTCCCGGCCGCCGTCAACGCGACCGTGTGC
AACGCCATCCCCAAGGCCGGCTACGGCGGCCAGGCCGGAGTGTATGCACC
GCCTGCCGGCGGCGTGGCCGGAGGATCCTACGGTGGCGATTATGGCCACT
GGGCCGGTGGCGGCGGCGGCGCGGCGGCACCCGGTGCAGCGGCACCGCAG
CCGACCGCCGGGTGGAGCGACTGGACGCACTGGATGCCCGCGGTCGCGAC
GCCGGAGCCGACACCGGAGCTGACGCCGAAACCGACATCGGCAGCGACCT
CGGCGACCACGCCGGACGCGGCGTAG
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