mRNA_P-wetherbeei_contig5943.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5943.1.1
Unique NamemRNA_P-wetherbeei_contig5943.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5943.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5943contigP-wetherbeei_contig5943:348..2744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1395
Hectar predicted targeting categoryother localisation
Exons4
Cds size1392
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.2707534-CDS-P-wetherbeei_contig5943:347..4601683186877.2707534-CDS-P-wetherbeei_contig5943:347..460Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5943 348..460 +
1683186877.280228-CDS-P-wetherbeei_contig5943:625..9441683186877.280228-CDS-P-wetherbeei_contig5943:625..944Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5943 626..944 +
1683186877.2896583-CDS-P-wetherbeei_contig5943:1336..20861683186877.2896583-CDS-P-wetherbeei_contig5943:1336..2086Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5943 1337..2086 +
1683186877.2995646-CDS-P-wetherbeei_contig5943:2532..27421683186877.2995646-CDS-P-wetherbeei_contig5943:2532..2742Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5943 2533..2742 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5943.1.1prot_P-wetherbeei_contig5943.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5943 348..2742 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5943.1.1

>prot_P-wetherbeei_contig5943.1.1 ID=prot_P-wetherbeei_contig5943.1.1|Name=mRNA_P-wetherbeei_contig5943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=464bp
RESASAAANLAVSVQRFRTRSYGAGAVPPDQKPSSAKSGKEPCHHNSPSH
CSFVLGTMRVLVGTVLLACAFDFAGLRRAAASFASSLDPDASTPPELFGT
DADCDVLSGKVIVVLGDSLSRELACGMIEFLAQDNHFCDAQNCTGRPKYY
ANKVDKTVRGYDCENSFSRKCRPVDGSVNLLGDSARGLEWRGTCSATTCA
VRHDDLLSGVSAGSDYSGNDGEDDNGEDDSGEDDSDEENSDETESDGSIS
LSSSVARKADSAKSSESGGGGGGGGGSSRFRPPGQQATILFHSATSVAQW
MYYRSDIEESLRKISEVVPRKDIIVLQTMNVWELKALREEVAAAGAAAVT
PAVKANFAAKMLAEYERFVAEVWVPIVRQYAGLGLWMGMHYRDMMKVPEE
YWPTQGNDLLRALNDAARRALAAAPRRRDPRQLRRGPSGGGGSDDGATPP
FELFFVENYDATVP
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mRNA from alignment at P-wetherbeei_contig5943:348..2744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5943.1.1 ID=mRNA_P-wetherbeei_contig5943.1.1|Name=mRNA_P-wetherbeei_contig5943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2397bp|location=Sequence derived from alignment at P-wetherbeei_contig5943:348..2744+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGAATCGGCGAGTGCAGCGGCTAACCTTGCAGTCAGCGTGCAGCGATT
TCGAACGAGATCATACGGTGCGGGTGCTGTGCCTCCCGATCAAAAACCAT
CAAGCGCAAAAAGGTGAAATGCATGCGGATGAGGTGATGGATGCCTATGA
TGCAAAGCATGCTCACCCGAAACGACAGACCGCGCCTATCGCAACGTGCA
TTAGAATGCTCTCTTTGATTTCCCATCTTTTCCGGTTCGTCGGCCCGTCC
TGTCGCTTCTTACCCCTAATTCCCGCAGCGGAAAAGAGCCCTGCCATCAC
AATAGCCCTAGCCATTGCAGTTTCGTGCTAGGAACCATGCGGGTATTGGT
AGGAACTGTGCTGCTCGCCTGCGCGTTCGACTTTGCTGGACTGCGGCGGG
CCGCGGCGAGCTTCGCGTCGTCGCTTGACCCCGACGCGTCGACGCCGCCC
GAGCTCTTCGGGACCGACGCTGACTGCGACGTTCTTTCCGGAAAAGTTAT
CGTCGTGCTCGGTGACTCGCTCTCCCGCGAGCTGGCGTGCGGCATGATTG
AATTCCTCGCGCAGGACAACCACTTCTGCGATGCCCAAAACTGCACGGTG
AGAGGCAATCCCTGGTCATCCTCTAAAGGCGCAAATGGCTTCCGCGATGA
CAAGTCGGATTGGTGTTACGCTCTGACGTTGCCCGCGTTTCGCTGCGCGG
ATCGATTTTGAAGATCCTCCTTTGAAGATCCTCCTCGCAAGGTTTGCCTC
GGCGCCTGTCTGCCACCTGCCGACGGCAGGCTAATCGTTTCTTGTTAATG
GTAGGCACTGGTCTGACCCACTCCCTATCTATTTCCTCCATGACGAGGCG
CCGTCCGCCCAAACTGGTGGCAATCGCTGCTGTCGCCGCATCTGTTGCCG
ACCACCCGCTGACATTGCTGCCGTCACTGCCTGTTGCCATTCCCTCACCT
GCATTCTCCCCGGCCTTGCCGTATCACCGTCGTCGCCAGGGCCGGCCCAA
GTACTACGCTAATAAGGTGGACAAGACGGTAAGGGGCTACGACTGCGAAA
ACAGTTTTTCCCGCAAGTGCCGCCCTGTCGACGGCTCGGTAAATCTGCTC
GGAGATTCGGCCCGGGGACTCGAATGGCGCGGAACCTGTTCTGCCACGAC
TTGCGCCGTCCGCCACGACGACCTTTTGAGCGGGGTCAGCGCCGGCAGCG
ATTACAGCGGCAACGATGGCGAAGACGACAACGGCGAAGATGACAGCGGT
GAAGACGACAGCGACGAAGAGAACAGCGATGAAACCGAAAGCGACGGCAG
CATCTCCTTGTCCAGCAGCGTTGCCCGCAAGGCCGACAGCGCGAAGAGCA
GCGAAAGCGGCGGCGGTGGCGGTGGCGGCGGCGGCAGCAGCAGGTTTCGG
CCGCCGGGGCAGCAGGCGACCATCCTGTTTCATTCGGCGACGTCGGTGGC
GCAGTGGATGTATTACCGTTCCGATATTGAGGAATCGCTCCGGAAAATCT
CCGAAGTGGTTCCTCGGAAAGATATCATCGTCCTGCAGACGATGAACGTG
TGGGAGCTGAAGGCGCTGCGGGAGGAGGTGGCGGCGGCCGGGGCGGCAGC
GGTTACGCCTGCGGTTAAGGCGAACTTCGCCGCCAAGATGCTGGCCGAGT
ACGAGCGGTTTGTGGCAGAGGTGTGGGTGCCCATAGTGCGGCAGTACGCC
GGGCTCGGCCTCTGGATGGGCATGCACTACCGGGACATGGTGGGTTGGTT
TTGCATTTTTCTTGTTCTCCGCGTTTATGTTTTTCCCTTTTGCATCTGCT
TTTTCCGCGCTTCTAGCTTTCGTTTCCCCACCTTTTCTCTTATGCTTTCT
TCTGTTTGGTTCTGGGTGTTTTGTAGTATGCCGAGCCAAAGGGTGGGTGC
TTATGCAGCTCTGTCTTGACACCTCAATAACCTCAGCTGTCATCTTGGAG
CCAAGAAAAGGACTGAGAAACTACCTCCACCTCACCACTATTTGCTGCTG
TCGTTTTTTGCTCCGCTTCTCACCCCGACTGCCGTGGCTCGTTGCCCGCC
CGCGCCTTTTTACCGCCTGCCCGCCCCATCCATTTGCCCGCCCCTTCGCC
TGTTTGGCCGCATGTCTGCCTTCTTGCCCTCCCAATCCCACATCTTTTTT
TTCTAACTGTGGTTTTTCGTCTGATCTGCGAACAGATGAAGGTGCCGGAA
GAGTACTGGCCGACGCAAGGCAACGATCTGCTACGAGCGCTCAACGACGC
CGCCCGCCGCGCGTTGGCAGCGGCGCCGCGGCGGCGGGATCCGCGCCAGC
TGCGGCGCGGCCCCAGTGGGGGGGGGGGCAGTGACGATGGTGCCACGCCG
CCGTTCGAGCTGTTTTTCGTGGAGAATTATGACGCCACGGTGCCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5943:348..2744+

>mRNA_P-wetherbeei_contig5943.1.1 ID=mRNA_P-wetherbeei_contig5943.1.1|Name=mRNA_P-wetherbeei_contig5943.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1392bp|location=Sequence derived from alignment at P-wetherbeei_contig5943:348..2744+ (Phaeothamnion wetherbeei SAG_119_79)
CGGGAATCGGCGAGTGCAGCGGCTAACCTTGCAGTCAGCGTGCAGCGATT
TCGAACGAGATCATACGGTGCGGGTGCTGTGCCTCCCGATCAAAAACCAT
CAAGCGCAAAAAGCGGAAAAGAGCCCTGCCATCACAATAGCCCTAGCCAT
TGCAGTTTCGTGCTAGGAACCATGCGGGTATTGGTAGGAACTGTGCTGCT
CGCCTGCGCGTTCGACTTTGCTGGACTGCGGCGGGCCGCGGCGAGCTTCG
CGTCGTCGCTTGACCCCGACGCGTCGACGCCGCCCGAGCTCTTCGGGACC
GACGCTGACTGCGACGTTCTTTCCGGAAAAGTTATCGTCGTGCTCGGTGA
CTCGCTCTCCCGCGAGCTGGCGTGCGGCATGATTGAATTCCTCGCGCAGG
ACAACCACTTCTGCGATGCCCAAAACTGCACGGGCCGGCCCAAGTACTAC
GCTAATAAGGTGGACAAGACGGTAAGGGGCTACGACTGCGAAAACAGTTT
TTCCCGCAAGTGCCGCCCTGTCGACGGCTCGGTAAATCTGCTCGGAGATT
CGGCCCGGGGACTCGAATGGCGCGGAACCTGTTCTGCCACGACTTGCGCC
GTCCGCCACGACGACCTTTTGAGCGGGGTCAGCGCCGGCAGCGATTACAG
CGGCAACGATGGCGAAGACGACAACGGCGAAGATGACAGCGGTGAAGACG
ACAGCGACGAAGAGAACAGCGATGAAACCGAAAGCGACGGCAGCATCTCC
TTGTCCAGCAGCGTTGCCCGCAAGGCCGACAGCGCGAAGAGCAGCGAAAG
CGGCGGCGGTGGCGGTGGCGGCGGCGGCAGCAGCAGGTTTCGGCCGCCGG
GGCAGCAGGCGACCATCCTGTTTCATTCGGCGACGTCGGTGGCGCAGTGG
ATGTATTACCGTTCCGATATTGAGGAATCGCTCCGGAAAATCTCCGAAGT
GGTTCCTCGGAAAGATATCATCGTCCTGCAGACGATGAACGTGTGGGAGC
TGAAGGCGCTGCGGGAGGAGGTGGCGGCGGCCGGGGCGGCAGCGGTTACG
CCTGCGGTTAAGGCGAACTTCGCCGCCAAGATGCTGGCCGAGTACGAGCG
GTTTGTGGCAGAGGTGTGGGTGCCCATAGTGCGGCAGTACGCCGGGCTCG
GCCTCTGGATGGGCATGCACTACCGGGACATGATGAAGGTGCCGGAAGAG
TACTGGCCGACGCAAGGCAACGATCTGCTACGAGCGCTCAACGACGCCGC
CCGCCGCGCGTTGGCAGCGGCGCCGCGGCGGCGGGATCCGCGCCAGCTGC
GGCGCGGCCCCAGTGGGGGGGGGGGCAGTGACGATGGTGCCACGCCGCCG
TTCGAGCTGTTTTTCGTGGAGAATTATGACGCCACGGTGCCC
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