mRNA_P-wetherbeei_contig5942.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5942.3.1
Unique NamemRNA_P-wetherbeei_contig5942.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Match: A0A2P2MTR8_RHIMU (Uncharacterized protein LOC105642502 n=2 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MTR8_RHIMU)

HSP 1 Score: 68.2 bits (165), Expect = 4.570e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 AAASSANVRP-WGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLSNLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMRAGDTLVIQGS 330
            A AS  N +  WG  +S+  ++ PHL +  ++ T+G+S +CN  LNDPS SN++C+V    +       GA++V L++  G  ++ VNG   +K +S  +  GD LV   S
Sbjct:  141 AKASKLNAKAAWGKLISQCSQD-PHLTMFGTIFTVGQSRQCNLWLNDPSSSNILCKVKHIER------GGASIVLLEIAGGKGIVQVNGKHYQKNSSVILTGGDELVFSPS 244
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BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Match: A0A2P2MTR0_RHIMU (Uncharacterized protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MTR0_RHIMU)

HSP 1 Score: 68.2 bits (165), Expect = 4.640e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 AAASSANVRP-WGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLSNLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMRAGDTLVIQGS 330
            A AS  N +  WG  +S+  ++ PHL +  ++ T+G+S +CN  LNDPS SN++C+V    +       GA++V L++  G  ++ VNG   +K +S  +  GD LV   S
Sbjct:  141 AKASKLNAKAAWGKLISQCSQD-PHLTMFGTIFTVGQSRQCNLWLNDPSSSNILCKVKHIER------GGASIVLLEIAGGKGIVQVNGKHYQKNSSVILTGGDELVFSPS 244
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BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Match: A0A2P2MTQ0_RHIMU (AAA domain-containing protein n=3 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2MTQ0_RHIMU)

HSP 1 Score: 68.2 bits (165), Expect = 4.760e-11
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1 
Query:    1 AAASSANVRP-WGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLSNLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMRAGDTLVIQGS 330
            A AS  N +  WG  +S+  ++ PHL +  ++ T+G+S +CN  LNDPS SN++C+V    +       GA++V L++  G  ++ VNG   +K +S  +  GD LV   S
Sbjct:  141 AKASKLNAKAAWGKLISQCSQD-PHLTMFGTIFTVGQSRQCNLWLNDPSSSNILCKVKHIER------GGASIVLLEIAGGKGIVQVNGKHYQKNSSVILTGGDELVFSPS 244
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BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Match: UPI0010A4476F (uncharacterized protein LOC114759219 isoform X1 n=2 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A4476F)

HSP 1 Score: 54.3 bits (129), Expect = 3.470e-6
Identity = 33/97 (34.02%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:   31 WGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLSNLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMRAGDTLVI 321
            WG  LS+  +N  HL L  S  T+G   +CN  LNDP++SN++C++ K  K G     G+++  L++      + VNG   +K +   + AGD +V 
Sbjct:  137 WGRLLSQCSQNR-HLSLCSSQFTVGHGRQCNLWLNDPAVSNVLCKL-KLTKHG-----GSSVGLLEITGDKGAVQVNGRNYKKNSCLILNAGDEVVF 226
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BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Match: A0A2I4E2E8_JUGRE (uncharacterized protein LOC108985655 isoform X1 n=18 Tax=Juglandaceae TaxID=16714 RepID=A0A2I4E2E8_JUGRE)

HSP 1 Score: 54.3 bits (129), Expect = 3.480e-6
Identity = 30/97 (30.93%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:   31 WGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLSNLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMRAGDTLVI 321
            WG  +S+  +N PH ++  +  T+G+ +RCN  L DPS+S+ +CR+    +    +G+  TL  L++      + VNG   RK +S  +  GD ++ 
Sbjct:  135 WGKLISQCSQN-PHREMRDATFTVGQGSRCNLLLEDPSISDNLCRLRHIER----EGSSVTL--LEITGRKGAVQVNGKIYRKNSSVILSGGDEVIF 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5942.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2P2MTR8_RHIMU4.570e-1135.14Uncharacterized protein LOC105642502 n=2 Tax=Rhizo... [more]
A0A2P2MTR0_RHIMU4.640e-1135.14Uncharacterized protein n=1 Tax=Rhizophora mucrona... [more]
A0A2P2MTQ0_RHIMU4.760e-1135.14AAA domain-containing protein n=3 Tax=Rhizophora m... [more]
UPI0010A4476F3.470e-634.02uncharacterized protein LOC114759219 isoform X1 n=... [more]
A0A2I4E2E8_JUGRE3.480e-630.93uncharacterized protein LOC108985655 isoform X1 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5942contigP-wetherbeei_contig5942:2639..3025 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog29730.Gorai.007G128700.1
PFAMsAAA,FHA
Model size330
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
GOsGO:0002090,GO:0002092,GO:0003008,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005886,GO:0007610,GO:0007611,GO:0007612,GO:0007613,GO:0008150,GO:0009893,GO:0010604,GO:0010646,GO:0010648,GO:0016020,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0023051,GO:0023057,GO:0030100,GO:0031323,GO:0031325,GO:0032501,GO:0032879,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044425,GO:0044456,GO:0044459,GO:0044464,GO:0045202,GO:0045211,GO:0045807,GO:0048259,GO:0048260,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050804,GO:0050805,GO:0050877,GO:0050890,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051966,GO:0051967,GO:0060255,GO:0060627,GO:0065007,GO:0071944,GO:0097060,GO:0098590,GO:0098794,GO:0099177
Exons2
Evalue5.73e-12
EggNOG OGsCOG0464@1|root,KOG0737@2759|Eukaryota,37IUV@33090|Viridiplantae,3G8DY@35493|Streptophyta
DescriptionAAA-type ATPase family protein
Cds size330
COG categoryO
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186877.2254438-CDS-P-wetherbeei_contig5942:2638..28401683186877.2254438-CDS-P-wetherbeei_contig5942:2638..2840Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5942 2639..2840 +
1683186877.237273-CDS-P-wetherbeei_contig5942:2897..30251683186877.237273-CDS-P-wetherbeei_contig5942:2897..3025Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5942 2898..3025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5942.3.1prot_P-wetherbeei_contig5942.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5942 2639..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5942.3.1

>prot_P-wetherbeei_contig5942.3.1 ID=prot_P-wetherbeei_contig5942.3.1|Name=mRNA_P-wetherbeei_contig5942.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
AAASSANVRPWGVFLSEYPENHPHLKLTKSVSTIGRSARCNFQLNDPSLS
NLVCRVNKGAKIGNGDGAGATLVRLDVCTGSSVITVNGAAVRKGTSATMR
AGDTLVIQGS
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mRNA from alignment at P-wetherbeei_contig5942:2639..3025+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5942.3.1 ID=mRNA_P-wetherbeei_contig5942.3.1|Name=mRNA_P-wetherbeei_contig5942.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=387bp|location=Sequence derived from alignment at P-wetherbeei_contig5942:2639..3025+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCTTCTTCTGCCAATGTGCGTCCATGGGGCGTGTTCCTGTCTGA
ATACCCTGAGAACCATCCACACTTGAAGCTAACCAAGTCGGTTTCCACGA
TCGGCCGCAGCGCGCGCTGCAACTTTCAGCTGAATGATCCATCTTTGAGC
AACCTCGTATGCCGCGTCAACAAGGGGGCCAAGATTGGCAACGGCGACGG
AGGTGCAGCAGGAGCTTCAGCGGCGACGGCGGCAGCGGCGGTGGCGGCGG
CCACCGCAGCCGGGGCTACCTTGGTGAGGCTCGACGTCTGCACGGGCTCG
AGCGTCATTACAGTGAACGGCGCTGCTGTCCGCAAAGGCACCAGTGCAAC
GATGCGCGCCGGCGACACCCTCGTCATTCAGGGCTCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5942:2639..3025+

>mRNA_P-wetherbeei_contig5942.3.1 ID=mRNA_P-wetherbeei_contig5942.3.1|Name=mRNA_P-wetherbeei_contig5942.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig5942:2639..3025+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCCGCTTCTTCTGCCAATGTGCGTCCATGGGGCGTGTTCCTGTCTGA
ATACCCTGAGAACCATCCACACTTGAAGCTAACCAAGTCGGTTTCCACGA
TCGGCCGCAGCGCGCGCTGCAACTTTCAGCTGAATGATCCATCTTTGAGC
AACCTCGTATGCCGCGTCAACAAGGGGGCCAAGATTGGCAACGGCGACGG
AGCCGGGGCTACCTTGGTGAGGCTCGACGTCTGCACGGGCTCGAGCGTCA
TTACAGTGAACGGCGCTGCTGTCCGCAAAGGCACCAGTGCAACGATGCGC
GCCGGCGACACCCTCGTCATTCAGGGCTCC
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