mRNA_P-wetherbeei_contig59328.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59328.1.1
Unique NamemRNA_P-wetherbeei_contig59328.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A6B1EGN3_9ACTN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A6B1EGN3_9ACTN)

HSP 1 Score: 245 bits (625), Expect = 2.010e-78
Identity = 122/166 (73.49%), Postives = 141/166 (84.94%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            I RESYFNHFAN+L GVD +R+G+GVNR GG ++VPLV+GPI R  PIELD A FLR+ T  RTKVT+PGPFTLSQLAQN+HY DQRSLA+AYA AI  E+ DL AAGIDV+QLDEPYLQANA+ ARGFAVEA+  A+ GIDATT LHTC+GYA+Y+ DKSGGYPF
Sbjct:   65 IGRESYFNHFANSLSGVDPERLGKGVNRRGGEAVVPLVSGPIRRTRPIELDTARFLRAHTSSRTKVTVPGPFTLSQLAQNDHYPDQRSLAMAYAAAINAELRDLHAAGIDVLQLDEPYLQANAEVARGFAVEAVAAAVDGIDATTTLHTCYGYALYMGDKSGGYPF 230          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A520XS38_9ACTN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Acidimicrobiales bacterium TaxID=2201156 RepID=A0A520XS38_9ACTN)

HSP 1 Score: 241 bits (615), Expect = 6.540e-77
Identity = 120/166 (72.29%), Postives = 137/166 (82.53%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            I RESYFNHFANAL GVD + +GEG NR GG++ VPLVNGPI R EP+EL+AA FLR+ TDRRTKVT+PGPFTLSQLAQN++YADQ  LA+AYA A+ EE+ DL AAGIDV+QLDEPYLQANA+ A  FAVEAI  AL GI+ATT LHTC+GYA YV  K  GYPF
Sbjct:   65 IGRESYFNHFANALGGVDQETIGEGTNRRGGKAEVPLVNGPIERREPVELEAARFLRAHTDRRTKVTVPGPFTLSQLAQNDYYADQHELAMAYAQAVNEELRDLQAAGIDVLQLDEPYLQANAETASVFAVEAISAALDGIEATTTLHTCYGYAAYVKSKESGYPF 230          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A6N7FMK7_9ACTN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A6N7FMK7_9ACTN)

HSP 1 Score: 211 bits (538), Expect = 5.230e-65
Identity = 106/172 (61.63%), Postives = 133/172 (77.33%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSG------GYPF 498
            +RRESY N FA ALDGVD +R+G+  +RVG    VPLV GP+ R  P+E+D  TFLR+ T+R TK+T+PGPFT+SQ  Q++HY D+R+LALAYADA+ EE+ DLVAAG DV+QLDEPYLQ+  + AR +A+EAIDRALAG+   TVLHTCFGYA ++ DKSG      GYPF
Sbjct:   83 MRRESYSNRFATALDGVDPERIGQAPSRVGRPDRVPLVVGPVRRRGPVEVDDVTFLRANTERTTKITVPGPFTMSQQCQDDHYGDRRALALAYADALNEEVHDLVAAGADVVQLDEPYLQSFLEDARAYALEAIDRALAGVTVPTVLHTCFGYAHFIKDKSGAEGAGLGYPF 254          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A7C2NTE2_9GAMM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A7C2NTE2_9GAMM)

HSP 1 Score: 199 bits (506), Expect = 2.340e-60
Identity = 100/167 (59.88%), Postives = 126/167 (75.45%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADK-SGGYPF 498
            IRRESY N FANALDG+D +RVGE V R G R  VP+V+GPI R EP+E+    FLR+ T +  K+TLPGPFT++Q A +EHY ++ S+ALAYA+A+ EE+ DL  AG DV+QLDEP+LQA AD AR + ++AIDRAL+G+  TT LH CFGYA  V DK +GGY F
Sbjct:   74 IRRESYSNRFANALDGIDRERVGEIVGRTGARIPVPIVSGPIRRREPVEVRDVQFLRANTGKTIKITLPGPFTMAQQAVDEHYGNEESVALAYAEAVNEEVHDLFKAGADVVQLDEPWLQARADKARRYGIKAIDRALSGVRGTTALHLCFGYAALVKDKPAGGYSF 240          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A382MB89_9ZZZZ (Meth_synt_2 domain-containing protein (Fragment) n=1 Tax=marine metagenome TaxID=408172 RepID=A0A382MB89_9ZZZZ)

HSP 1 Score: 198 bits (504), Expect = 4.810e-60
Identity = 99/166 (59.64%), Postives = 122/166 (73.49%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            +RRESY N FANALDG+D D  GE ++R G    VP V G +SR EP+E+    FL+S TD+  K+TLPGPFT+SQ AQN+ YAD   LA+AYA+A+ EE+ DL  AGID++QLDEPY+QA  +AAR +A+ AIDRALAG   TTVLH CFGY  +VADK  GY F
Sbjct:   75 MRRESYSNRFANALDGIDIDNPGEAIDRTGKAVPVPRVTGKVSRREPVEVRFVEFLKSHTDKPIKLTLPGPFTMSQQAQNDFYADDAELAMAYAEAVNEELKDLFGAGIDIVQLDEPYVQARPEAARNYALPAIDRALAGARGTTVLHVCFGYGKHVADKPDGYAF 240          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A536PMU9_9CHLR (Cobalamin-independent methionine synthase II family protein n=2 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A536PMU9_9CHLR)

HSP 1 Score: 197 bits (501), Expect = 1.470e-59
Identity = 98/166 (59.04%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            +RRESY NHFA++L GVD DR GE V+R G + +VP + GPI R  P+E+ A   LR  TDRR K+T+PGPFT+SQ A +EHY D  +LA+A+A A+ EE+ DLVAAG DV+Q+DEPYLQ+    AR FA+ AI+RALAG+  TT LHTCFGYA Y+ DK G Y F
Sbjct:   74 MRRESYSNHFASSLAGVDLDRPGEAVSRTGKKDIVPRIVGPIRRTRPVEVRALELLRRNTDRRVKITVPGPFTMSQQAVDEHYRDVAALAMAFAVAVNEELHDLVAAGADVVQIDEPYLQSRIPEARAFALPAIERALAGVSGTTALHTCFGYAHYIKDKPGHYAF 239          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A538I4E4_9ACTN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=2 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538I4E4_9ACTN)

HSP 1 Score: 196 bits (499), Expect = 3.030e-59
Identity = 97/166 (58.43%), Postives = 124/166 (74.70%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            +RRESY N FA ALDG+D D  G  ++R G  + VP V GP+ R +P+E+    FLR+ T+R  K+T+PGPFT++Q AQN+HY D  SLALAYA+A+ EE++DL AAG DV+Q+DEPYLQA  + AR +AVEAIDRAL GI+  T+LHTCFGYA  V D+  GYPF
Sbjct:   75 MRRESYSNRFATALDGIDLDHPGVALDRTGHENPVPRVVGPVRRRQPVEVRDVEFLRTLTERPIKITVPGPFTMTQQAQNDHYPDAGSLALAYAEAVNEELLDLKAAGADVVQIDEPYLQARPEQAREYAVEAIDRALRGIEGDTILHTCFGYAHVVKDRLTGYPF 240          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: UPI001CC97476 (5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase n=1 Tax=Afifella sp. IM 167 TaxID=2033586 RepID=UPI001CC97476)

HSP 1 Score: 195 bits (496), Expect = 7.280e-59
Identity = 97/166 (58.43%), Postives = 123/166 (74.10%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            +RRESY NHFANAL+G+D +  GE ++R+G    VP V  P+ R  P+ L+A  FLR+ TDR+ KVTLPGPFTL+Q AQN+ YA    +ALAYADA+ EE  +L  AG D+IQLDEP++QA  D A  +AV+AIDRAL G++ATTV+H CFGYA +VADK  GY F
Sbjct:   74 VRRESYSNHFANALEGLDEENPGEVISRIGKPIKVPRVVAPVRRARPVGLEALKFLRAQTDRKVKVTLPGPFTLAQQAQNDFYASVEEMALAYADAVNEEARELADAGADIIQLDEPWMQAFPDRAGEYAVKAIDRALKGVNATTVVHLCFGYAAFVADKPAGYSF 239          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A662E2C3_9ACTN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A662E2C3_9ACTN)

HSP 1 Score: 193 bits (490), Expect = 6.140e-58
Identity = 96/166 (57.83%), Postives = 119/166 (71.69%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            +RRESY N FANAL G+D D  G  V+R G    VP + GPI R  P+E+D    ++  TDR  K+TLPGPFT++Q AQNE Y D RSLALAYADA+  E+ DL +AG+D++Q+DEPY+QA A+AAR +AVEAIDRAL G   TT LH CFGY  +V+DK  GY F
Sbjct:   75 MRRESYSNQFANALSGLDLDNEGSAVDRTGKDVPVPRITGPIERLRPVEVDHIALIKDHTDRPIKITLPGPFTMTQQAQNEFYPDDRSLALAYADAVNSEMHDLFSAGVDIVQIDEPYVQARAEAAREYAVEAIDRALRGAKGTTALHVCFGYGRHVSDKPPGYSF 240          
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Match: A0A536R6C3_9CHLR (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=4 Tax=Terrabacteria group TaxID=1783272 RepID=A0A536R6C3_9CHLR)

HSP 1 Score: 193 bits (490), Expect = 6.140e-58
Identity = 97/166 (58.43%), Postives = 122/166 (73.49%), Query Frame = 1
Query:    1 IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIELDAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREEIVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTCFGYAVYVADKSGGYPF 498
            IRRESY N FA AL+G+D D  G  ++R G  + VP V GPI R  P+E     FLR++TDR  K TLPGPFT+SQ AQ++HY+D+ +LA+A A+A+ EE+ DL AAG D++QLDEPYLQA A+ A  FA+ AI+RAL GID TT LHTCFGYA  V ++ GGYPF
Sbjct:   74 IRRESYSNRFATALEGMDLDNPGTALDRTGHANPVPRVVGPIRRTRPVEQRDVEFLRASTDRPIKATLPGPFTMSQQAQDDHYSDEEALAMALAEAVNEEVRDLFAAGADIVQLDEPYLQARAEKAARFAIRAINRALEGIDGTTALHTCFGYAHIVHNRPGGYPF 239          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59328.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6B1EGN3_9ACTN2.010e-7873.495-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A520XS38_9ACTN6.540e-7772.295-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A6N7FMK7_9ACTN5.230e-6561.635-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A7C2NTE2_9GAMM2.340e-6059.885-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A382MB89_9ZZZZ4.810e-6059.64Meth_synt_2 domain-containing protein (Fragment) n... [more]
A0A536PMU9_9CHLR1.470e-5959.04Cobalamin-independent methionine synthase II famil... [more]
A0A538I4E4_9ACTN3.030e-5958.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
UPI001CC974767.280e-5958.435-methyltetrahydropteroyltriglutamate-- homocystei... [more]
A0A662E2C3_9ACTN6.140e-5857.835-methyltetrahydropteroyltriglutamate--homocystein... [more]
A0A536R6C3_9CHLR6.140e-5858.435-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59328contigP-wetherbeei_contig59328:2..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog675635.Psed_2853
Preferred namemetE
PFAMsMeth_synt_2
Model size498
Max annot lvl201174|Actinobacteria
KEGG rclassRC00035,RC00113,RC01241
KEGG koko:K00549,ko:K22363
KEGG ReactionR04405,R09365,R11897,R11899
KEGG Pathwayko00270,ko00450,ko00625,ko01100,ko01110,ko01230,map00270,map00450,map00625,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.7e-56
EggNOG OGsCOG0620@1|root,COG0620@2|Bacteria,2GIXA@201174|Actinobacteria,4E2EF@85010|Pseudonocardiales
EC2.1.1.14,4.4.1.23
DescriptionCobalamin-independent synthase, Catalytic domain
Cds size498
COG categoryE
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.4247687-CDS-P-wetherbeei_contig59328:1..4991683186876.4247687-CDS-P-wetherbeei_contig59328:1..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59328 2..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59328.1.1prot_P-wetherbeei_contig59328.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59328 2..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59328.1.1

>prot_P-wetherbeei_contig59328.1.1 ID=prot_P-wetherbeei_contig59328.1.1|Name=mRNA_P-wetherbeei_contig59328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
IRRESYFNHFANALDGVDHDRVGEGVNRVGGRSLVPLVNGPISRGEPIEL
DAATFLRSATDRRTKVTLPGPFTLSQLAQNEHYADQRSLALAYADAIREE
IVDLVAAGIDVIQLDEPYLQANADAARGFAVEAIDRALAGIDATTVLHTC
FGYAVYVADKSGGYPF
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mRNA from alignment at P-wetherbeei_contig59328:2..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59328.1.1 ID=mRNA_P-wetherbeei_contig59328.1.1|Name=mRNA_P-wetherbeei_contig59328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59328:2..499- (Phaeothamnion wetherbeei SAG_119_79)
ATCCGTCGCGAGAGCTACTTCAACCACTTCGCCAACGCGCTGGACGGCGT CGATCACGACCGGGTGGGGGAGGGCGTCAACCGCGTCGGCGGGCGCTCGC TCGTCCCGTTGGTCAACGGCCCGATCAGCCGCGGTGAACCGATCGAGCTC GACGCCGCGACGTTCCTGCGATCGGCGACGGACCGCCGCACGAAGGTCAC CCTCCCCGGGCCGTTCACGCTCAGTCAGCTCGCCCAGAACGAGCACTACG CCGACCAGCGTTCGCTCGCCCTGGCCTACGCGGATGCGATCCGCGAGGAG ATCGTCGATCTCGTCGCCGCGGGCATCGACGTCATCCAACTCGACGAGCC GTACCTCCAGGCGAACGCCGACGCGGCACGCGGCTTCGCCGTCGAGGCCA TCGACCGAGCGCTCGCCGGCATCGACGCCACGACGGTGCTGCACACCTGC TTCGGCTACGCCGTCTACGTCGCCGACAAGAGCGGCGGCTACCCGTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59328:2..499-

>mRNA_P-wetherbeei_contig59328.1.1 ID=mRNA_P-wetherbeei_contig59328.1.1|Name=mRNA_P-wetherbeei_contig59328.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59328:2..499- (Phaeothamnion wetherbeei SAG_119_79)
ATCCGTCGCGAGAGCTACTTCAACCACTTCGCCAACGCGCTGGACGGCGT
CGATCACGACCGGGTGGGGGAGGGCGTCAACCGCGTCGGCGGGCGCTCGC
TCGTCCCGTTGGTCAACGGCCCGATCAGCCGCGGTGAACCGATCGAGCTC
GACGCCGCGACGTTCCTGCGATCGGCGACGGACCGCCGCACGAAGGTCAC
CCTCCCCGGGCCGTTCACGCTCAGTCAGCTCGCCCAGAACGAGCACTACG
CCGACCAGCGTTCGCTCGCCCTGGCCTACGCGGATGCGATCCGCGAGGAG
ATCGTCGATCTCGTCGCCGCGGGCATCGACGTCATCCAACTCGACGAGCC
GTACCTCCAGGCGAACGCCGACGCGGCACGCGGCTTCGCCGTCGAGGCCA
TCGACCGAGCGCTCGCCGGCATCGACGCCACGACGGTGCTGCACACCTGC
TTCGGCTACGCCGTCTACGTCGCCGACAAGAGCGGCGGCTACCCGTTC
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