mRNA_P-wetherbeei_contig59282.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59282.1.1
Unique NamemRNA_P-wetherbeei_contig59282.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59282.1.1 vs. uniprot
Match: A0A7Z2SRU7_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium sp. CCBAU 051011 TaxID=858422 RepID=A0A7Z2SRU7_9BRAD)

HSP 1 Score: 52.4 bits (124), Expect = 6.350e-5
Identity = 51/158 (32.28%), Postives = 80/158 (50.63%), Query Frame = 1 
Query:   16 LSARRTLVFSLLLFIPLAIFASALVRFTFVALVAALVVGACSSSAWRRKNVLIVIAAIALSVAAGFVSRPQHIARYASYAIGGGQTDPQAPASTANEAPATSXXXXXXXXXXXXXXXAPAQKLEQGAKLQYLA-PSCTTETNVNLQNSIAIRRVLLLD 486
            L+ RR +V + LLF+P+AIFA+A+VRF FVA+V AL++ A  SS  +R  + I+IA +      G ++R        +YA        +   ST  +  A++                  QK  Q   ++ +  PSC  + ++N  NS+AIR+ LL D
Sbjct:  169 LTPRRRVVLTALLFLPVAIFAAAMVRFYFVAIVVALLLAAVLSSGRQRVYIAIIIATVLAGSTVGLLARFDTAKVLMTYAT------QETEISTIQKTVASTQ-----------------QKHNQTEMVEKIVLPSCNLDLDLN--NSVAIRKALLRD 301
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59282.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7Z2SRU7_9BRAD6.350e-532.28Uncharacterized protein n=2 Tax=Bradyrhizobium sp.... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59282contigP-wetherbeei_contig59282:2..487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size486
Hectar predicted targeting categorysignal peptide
Exons1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.0009546-CDS-P-wetherbeei_contig59282:1..4841683186876.0009546-CDS-P-wetherbeei_contig59282:1..484Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59282 2..484 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186876.0112247-UTR-P-wetherbeei_contig59282:484..4871683186876.0112247-UTR-P-wetherbeei_contig59282:484..487Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59282 485..487 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59282.1.1prot_P-wetherbeei_contig59282.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59282 2..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59282.1.1

>prot_P-wetherbeei_contig59282.1.1 ID=prot_P-wetherbeei_contig59282.1.1|Name=mRNA_P-wetherbeei_contig59282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=161bp
MMRQLSARRTLVFSLLLFIPLAIFASALVRFTFVALVAALVVGACSSSAW
RRKNVLIVIAAIALSVAAGFVSRPQHIARYASYAIGGGQTDPQAPASTAN
EAPATSNANQAPAAPRADSASAPAQKLEQGAKLQYLAPSCTTETNVNLQN
SIAIRRVLLLD
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mRNA from alignment at P-wetherbeei_contig59282:2..487-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59282.1.1 ID=mRNA_P-wetherbeei_contig59282.1.1|Name=mRNA_P-wetherbeei_contig59282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=486bp|location=Sequence derived from alignment at P-wetherbeei_contig59282:2..487- (Phaeothamnion wetherbeei SAG_119_79)
CTGATGATGCGGCAGTTGAGCGCTCGCAGAACACTGGTGTTCTCGCTTCT
ACTATTCATCCCGCTGGCAATATTCGCTTCAGCTCTTGTCCGCTTCACAT
TCGTCGCGCTCGTAGCAGCCCTCGTCGTCGGCGCCTGTTCGAGCAGCGCA
TGGCGGCGAAAGAACGTGCTGATCGTCATTGCCGCCATCGCATTGAGCGT
CGCCGCCGGATTTGTATCCCGCCCGCAGCATATTGCCCGGTATGCGAGCT
ACGCGATTGGCGGTGGCCAGACCGATCCGCAAGCGCCGGCATCAACGGCA
AACGAGGCTCCCGCCACGTCAAACGCCAACCAGGCTCCCGCCGCGCCGCG
GGCCGATTCCGCAAGCGCACCGGCGCAGAAGCTGGAACAGGGGGCGAAAC
TGCAATATCTCGCCCCAAGCTGCACTACCGAGACCAACGTCAATTTGCAG
AATTCCATCGCAATCAGGAGAGTTCTGCTGCTTGAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59282:2..487-

>mRNA_P-wetherbeei_contig59282.1.1 ID=mRNA_P-wetherbeei_contig59282.1.1|Name=mRNA_P-wetherbeei_contig59282.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=483bp|location=Sequence derived from alignment at P-wetherbeei_contig59282:2..487- (Phaeothamnion wetherbeei SAG_119_79)
ATGATGCGGCAGTTGAGCGCTCGCAGAACACTGGTGTTCTCGCTTCTACT
ATTCATCCCGCTGGCAATATTCGCTTCAGCTCTTGTCCGCTTCACATTCG
TCGCGCTCGTAGCAGCCCTCGTCGTCGGCGCCTGTTCGAGCAGCGCATGG
CGGCGAAAGAACGTGCTGATCGTCATTGCCGCCATCGCATTGAGCGTCGC
CGCCGGATTTGTATCCCGCCCGCAGCATATTGCCCGGTATGCGAGCTACG
CGATTGGCGGTGGCCAGACCGATCCGCAAGCGCCGGCATCAACGGCAAAC
GAGGCTCCCGCCACGTCAAACGCCAACCAGGCTCCCGCCGCGCCGCGGGC
CGATTCCGCAAGCGCACCGGCGCAGAAGCTGGAACAGGGGGCGAAACTGC
AATATCTCGCCCCAAGCTGCACTACCGAGACCAACGTCAATTTGCAGAAT
TCCATCGCAATCAGGAGAGTTCTGCTGCTTGAC
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