mRNA_P-wetherbeei_contig5927.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5927.1.1
Unique NamemRNA_P-wetherbeei_contig5927.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: W7TK49_9STRA (6-4 photolyase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TK49_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 1.810e-20
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 1 
Query:    7 VSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRYR 156
            VS+HWFRKGLRLHDNPALLEAC GA  V+PVF++DPHFA P+ +GV RYR
Sbjct:   49 VSLHWFRKGLRLHDNPALLEACEGATHVYPVFILDPHFAKPDVIGVLRYR 98
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A7S0CRC1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CRC1_9EUKA)

HSP 1 Score: 85.5 bits (210), Expect = 2.540e-20
Identity = 32/49 (65.31%), Postives = 45/49 (91.84%), Query Frame = 1 
Query:    7 VSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRY 153
            V++HWFRKGLR+HDNPAL++AC+GA  ++P+F++DP+FA P+ VGVNRY
Sbjct:   21 VAIHWFRKGLRIHDNPALMDACKGALLMYPLFILDPYFAKPDFVGVNRY 69
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A482S988_9ARCH (Deoxyribodipyrimidine photo-lyase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S988_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 1.100e-19
Identity = 34/49 (69.39%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:    7 VSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRY 153
            VS+HWFRKGLRLHDNPALL AC  ++ ++PVF +DPHFA P+ VGVNR+
Sbjct:    8 VSLHWFRKGLRLHDNPALLRACEHSDHLYPVFCLDPHFAHPQHVGVNRF 56
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A9V4B6_MONBE (Predicted protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V4B6_MONBE)

HSP 1 Score: 87.0 bits (214), Expect = 9.670e-19
Identity = 38/49 (77.55%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    7 VSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRY 153
            +S+HWFRKG RLHDNPAL  A RGA QV+PVFVIDPHFA PE VGV RY
Sbjct:    6 ISLHWFRKGQRLHDNPALWRALRGATQVYPVFVIDPHFAKPENVGVLRY 54
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: F2U6L6_SALR5 (DNA photolyase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6L6_SALR5)

HSP 1 Score: 87.0 bits (214), Expect = 1.030e-18
Identity = 38/49 (77.55%), Postives = 43/49 (87.76%), Query Frame = 1 
Query:    7 VSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRY 153
            VS+HWFRKGLRLHDN ALL A +GA+QV+PVFV+DPHFA PE VGV RY
Sbjct:    6 VSIHWFRKGLRLHDNAALLAALKGAKQVYPVFVLDPHFAKPEFVGVVRY 54
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: UPI001E1DA7CB (cryptochrome-1-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DA7CB)

HSP 1 Score: 86.3 bits (212), Expect = 1.950e-18
Identity = 37/49 (75.51%), Postives = 42/49 (85.71%), Query Frame = 1 
Query:   10 SVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRYR 156
            S+HWFRKGLRLHDNPALLEAC+ A  V+PVFV+DP FA   RVGVNR+R
Sbjct:   39 SIHWFRKGLRLHDNPALLEACKNASHVWPVFVMDPWFAETARVGVNRWR 87
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A8B6DFN4_MYTGA (Photolyase/cryptochrome alpha/beta domain-containing protein n=2 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6DFN4_MYTGA)

HSP 1 Score: 81.6 bits (200), Expect = 2.090e-18
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   10 SVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRYR 156
            S+HWFRKGLRLHDNPALL AC  A  V P+F++DP FAS  RVGVNR+R
Sbjct:   18 SIHWFRKGLRLHDNPALLAACENAVDVKPIFILDPWFASNARVGVNRWR 66
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A6J8B2G7_MYTCO (CRY n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8B2G7_MYTCO)

HSP 1 Score: 81.6 bits (200), Expect = 6.470e-18
Identity = 35/49 (71.43%), Postives = 40/49 (81.63%), Query Frame = 1 
Query:   10 SVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRYR 156
            S+HWFRKGLRLHDNPALL AC  A  V P+F++DP FAS  RVGVNR+R
Sbjct:   13 SIHWFRKGLRLHDNPALLAACENAVDVKPIFILDPWFASNARVGVNRWR 61
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A835Z8B1_9STRA (DNA photolyase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B1_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 6.680e-18
Identity = 34/51 (66.67%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 MVVSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRY 153
            M  ++HWFRKGLRLHDNPALL+A + A+QV+PVF++DPHFA+P +VG  RY
Sbjct:    1 MTTAIHWFRKGLRLHDNPALLQAAKEAQQVYPVFMLDPHFANPAKVGQLRY 51
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BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Match: A0A0G4EYQ6_VITBC (Photolyase/cryptochrome alpha/beta domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EYQ6_VITBC)

HSP 1 Score: 84.0 bits (206), Expect = 1.260e-17
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:   10 SVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNRYR 156
            +V WFRKGLRLHDN ALLEAC+ A  V+PVF+IDPHF  P +VGVNRYR
Sbjct:    5 AVLWFRKGLRLHDNLALLEACKDATHVYPVFIIDPHFVGPGKVGVNRYR 53
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5927.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7TK49_9STRA1.810e-2076.006-4 photolyase n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A7S0CRC1_9EUKA2.540e-2065.31Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A482S988_9ARCH1.100e-1969.39Deoxyribodipyrimidine photo-lyase (Fragment) n=1 T... [more]
A9V4B6_MONBE9.670e-1977.55Predicted protein n=1 Tax=Monosiga brevicollis Tax... [more]
F2U6L6_SALR51.030e-1877.55DNA photolyase n=1 Tax=Salpingoeca rosetta (strain... [more]
UPI001E1DA7CB1.950e-1875.51cryptochrome-1-like isoform X1 n=2 Tax=Mercenaria ... [more]
A0A8B6DFN4_MYTGA2.090e-1871.43Photolyase/cryptochrome alpha/beta domain-containi... [more]
A0A6J8B2G7_MYTCO6.470e-1871.43CRY n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A... [more]
A0A835Z8B1_9STRA6.680e-1866.67DNA photolyase n=1 Tax=Tribonema minus TaxID=30337... [more]
A0A0G4EYQ6_VITBC1.260e-1773.47Photolyase/cryptochrome alpha/beta domain-containi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5927contigP-wetherbeei_contig5927:612..948 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog227086.JGI_V11_58130
Preferred nameCRY2
PFAMsDNA_photolyase,FAD_binding_7
Model size156
Max annot lvl2759|Eukaryota
KEGG koko:K02295,ko:K10426
KEGG Pathwayko04710,ko04962,ko05016,map04710,map04962,map05016
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000060,GO:0000122,GO:0000166,GO:0000976,GO:0000977,GO:0000978,GO:0000987,GO:0000988,GO:0000989,GO:0001012,GO:0001067,GO:0001750,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0003904,GO:0003913,GO:0003914,GO:0004888,GO:0004930,GO:0005102,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005641,GO:0005654,GO:0005737,GO:0005739,GO:0005829,GO:0005886,GO:0005929,GO:0005975,GO:0005996,GO:0006006,GO:0006094,GO:0006355,GO:0006357,GO:0006464,GO:0006468,GO:0006606,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006974,GO:0006975,GO:0007154,GO:0007165,GO:0007186,GO:0007600,GO:0007602,GO:0007610,GO:0007622,GO:0007623,GO:0007626,GO:0008020,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008277,GO:0009058,GO:0009314,GO:0009411,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009584,GO:0009588,GO:0009605,GO:0009628,GO:0009629,GO:0009637,GO:0009648,GO:0009649,GO:0009719,GO:0009725,GO:0009785,GO:0009881,GO:0009882,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010558,GO:0010563,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0010817,GO:0010876,GO:0010921,GO:0010923,GO:0010966,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016051,GO:0016310,GO:0016604,GO:0016607,GO:0016829,GO:0016830,GO:0017038,GO:0019219,GO:0019220,GO:0019222,GO:0019318,GO:0019319,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0019902,GO:0019915,GO:0023051,GO:0023052,GO:0023057,GO:0030522,GO:0031090,GO:0031253,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032268,GO:0032269,GO:0032368,GO:0032369,GO:0032501,GO:0032515,GO:0032868,GO:0032879,GO:0032922,GO:0032991,GO:0033036,GO:0033143,GO:0033144,GO:0033365,GO:0033500,GO:0033554,GO:0033762,GO:0034504,GO:0034613,GO:0035257,GO:0035303,GO:0035304,GO:0035305,GO:0035308,GO:0036094,GO:0036211,GO:0038023,GO:0040011,GO:0042221,GO:0042330,GO:0042332,GO:0042592,GO:0042593,GO:0042622,GO:0042749,GO:0042752,GO:0042754,GO:0042826,GO:0042886,GO:0042995,GO:0043005,GO:0043086,GO:0043153,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043412,GO:0043434,GO:0043565,GO:0043666,GO:0044057,GO:0044060,GO:0044070,GO:0044092,GO:0044212,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045184,GO:0045187,GO:0045475,GO:0045744,GO:0045892,GO:0045934,GO:0045936,GO:0046364,GO:0046883,GO:0046888,GO:0046907,GO:0048037,GO:0048511,GO:0048512,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048878,GO:0050660,GO:0050662,GO:0050789,GO:0050790,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050906,GO:0050953,GO:0050958,GO:0050962,GO:0050980,GO:0051046,GO:0051048,GO:0051049,GO:0051051,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051234,GO:0051235,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051252,GO:0051253,GO:0051336,GO:0051346,GO:0051427,GO:0051606,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0060089,GO:0060170,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070888,GO:0071000,GO:0071214,GO:0071478,GO:0071482,GO:0071483,GO:0071702,GO:0071704,GO:0071705,GO:0071944,GO:0071949,GO:0072594,GO:0080090,GO:0080134,GO:0080135,GO:0097159,GO:0097381,GO:0097458,GO:0097730,GO:0097731,GO:0097733,GO:0098588,GO:0098590,GO:0104004,GO:0120025,GO:0120038,GO:0140097,GO:0140110,GO:1901265,GO:1901363,GO:1901564,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901976,GO:1902679,GO:1903320,GO:1903321,GO:1903506,GO:1903507,GO:1903530,GO:1903531,GO:1905952,GO:1905953,GO:1990837,GO:2000001,GO:2000112,GO:2000113,GO:2000118,GO:2000322,GO:2000323,GO:2000831,GO:2000832,GO:2000846,GO:2000847,GO:2000849,GO:2000850,GO:2001020,GO:2001141
Exons2
Evalue2.38e-20
EggNOG OGsCOG0415@1|root,KOG0133@2759|Eukaryota
DescriptionDNA photolyase activity
Cds size156
COG categoryL
BRITEko00000,ko00001,ko03036,ko03400,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.8562407-CDS-P-wetherbeei_contig5927:611..6981683186875.8562407-CDS-P-wetherbeei_contig5927:611..698Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5927 612..698 +
1683186875.8659518-CDS-P-wetherbeei_contig5927:879..9481683186875.8659518-CDS-P-wetherbeei_contig5927:879..948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5927 880..948 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5927.1.1prot_P-wetherbeei_contig5927.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5927 612..948 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5927.1.1

>prot_P-wetherbeei_contig5927.1.1 ID=prot_P-wetherbeei_contig5927.1.1|Name=mRNA_P-wetherbeei_contig5927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=52bp
MVVSVHWFRKGLRLHDNPALLEACRGAEQVFPVFVIDPHFASPERVGVNR
YR
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mRNA from alignment at P-wetherbeei_contig5927:612..948+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5927.1.1 ID=mRNA_P-wetherbeei_contig5927.1.1|Name=mRNA_P-wetherbeei_contig5927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=337bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:612..948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTGTCTGTGCACTGGTTTCGCAAGGGGCTTCGGCTTCACGACAA
CCCGGCTCTCCTGGAAGCTTGTCGAGGCGCGGAACAGGTGAGGGTGCAAG
AAGTCTCTTCGTCAGCGCAAAGGGCATTCCCTCTGTCGTCATCGGGGGTT
TGCAAGCGGGTCACGCCAATATCTAAAACCAGAACAACTTAAGGGAGGGC
CTGCTTTTCGCCGATGAACTTCACATTACAACTTTGAGCTCCCTCGTGAC
GTCTGTACCGTTCTACAGGTCTTCCCGGTGTTCGTGATCGACCCGCACTT
CGCCAGCCCCGAGCGGGTTGGCGTCAACCGCTACCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5927:612..948+

>mRNA_P-wetherbeei_contig5927.1.1 ID=mRNA_P-wetherbeei_contig5927.1.1|Name=mRNA_P-wetherbeei_contig5927.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=156bp|location=Sequence derived from alignment at P-wetherbeei_contig5927:612..948+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGGTGTCTGTGCACTGGTTTCGCAAGGGGCTTCGGCTTCACGACAA
CCCGGCTCTCCTGGAAGCTTGTCGAGGCGCGGAACAGGTCTTCCCGGTGT
TCGTGATCGACCCGCACTTCGCCAGCCCCGAGCGGGTTGGCGTCAACCGC
TACCGG
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