mRNA_P-wetherbeei_contig59267.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59267.1.1
Unique NamemRNA_P-wetherbeei_contig59267.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: UPI001C3DB0EA (ABC transporter permease n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3DB0EA)

HSP 1 Score: 233 bits (595), Expect = 3.650e-75
Identity = 117/162 (72.22%), Postives = 142/162 (87.65%), Query Frame = 1
Query:    4 ISWPVYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            +SWPVYRL+LRS++ GRR++AL VL  VPVVAA++FA+ G++DPRIFWARLLQRLVIPTVTAF+AVV+G+ AIG+EREDGTILYL +TPLSR TLV TKVLAAWT+A+ALL P+++AA  +SLGDR    Q+ WPL GVALS+LCYCAV AWLSM +RRPVV
Sbjct:    7 VSWPVYRLTLRSLVAGRRLVALSVLVLVPVVAAIVFASAGEIDPRIFWARLLQRLVIPTVTAFVAVVIGASAIGEEREDGTILYLAATPLSRTTLVLTKVLAAWTLALALLVPSIVAAAAISLGDRFTAGQLAWPLAGVALSSLCYCAVSAWLSMTTRRPVV 168          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: UPI001C3E3ACE (ABC transporter permease n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3E3ACE)

HSP 1 Score: 221 bits (564), Expect = 1.800e-70
Identity = 117/161 (72.67%), Postives = 136/161 (84.47%), Query Frame = 1
Query:    7 SWPVYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            S PVYRL+LRS+LDGRRVLAL  LA VPV AAV+FA  GD+DPRIFWARL QRLVIPTVTAFIAVV+ +GAIGDEREDGTILYL STPL RL L+ TKVLAAWT +M LLAP+V+ +G+++LGDRA    ++WPLVGVAL+AL YCA    L+M+SRRPVV
Sbjct:    7 SGPVYRLTLRSLLDGRRVLALAGLALVPVFAAVVFATAGDIDPRIFWARLAQRLVIPTVTAFIAVVIAAGAIGDEREDGTILYLASTPLPRLGLIGTKVLAAWTASMILLAPSVLVSGVIALGDRATAEMLVWPLVGVALAALGYCAAAVLLAMVSRRPVV 167          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A2A9HF01_CHLB2 (ABC-2 type transport system permease protein n=3 Tax=Chloroflexi TaxID=200795 RepID=A0A2A9HF01_CHLB2)

HSP 1 Score: 91.3 bits (225), Expect = 1.760e-19
Identity = 62/161 (38.51%), Postives = 93/161 (57.76%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIF--AAVGDLDPRIFWAR-LLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            + RL++R +L  RR +A+ +LA VPV  A++F  AA  D DP  F AR LL  +V  T+   + +V  +GA G + EDGT++YL++TP+ R  +V  +++ AW  A ALL P+   AG ++L    D   +L   V V   A  Y A   WLS+ + R +V
Sbjct:    5 IARLTVRQLLGQRRTVAVALLALVPVAIALLFRFAAPEDADPERFTARGLLGGIVTTTILPLVTLVFATGAFGQDAEDGTLIYLLATPVPRRAIVLARLVVAWLAAAALLLPSAALAGALAL-QGGDPGIVLGFAVAVVAGAFVYTAAFTWLSIATGRALV 164          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A2N2LMS8_9CHLR (ABC transporter permease n=1 Tax=Chloroflexi bacterium HGW-Chloroflexi-9 TaxID=2013732 RepID=A0A2N2LMS8_9CHLR)

HSP 1 Score: 77.0 bits (188), Expect = 4.280e-14
Identity = 57/160 (35.62%), Postives = 88/160 (55.00%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGD-LDPRIFWAR-LLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            ++ L+LR +L  RR L L +LA +PV+ A +F    + + P  F A  L    ++  V    A+V+G+ A+G E EDGT++YL+  PL R T+V  KV AAW V  A++   V+A+GL+ L         L  +V V   +L Y A+   LS+   R ++
Sbjct:    5 IFVLTLRQLLRQRRTLLLVLLAVLPVLLATLFRLTAEEVTPARFAANGLFAGFIVNLVLPLTALVVGTAALGQEIEDGTVVYLLGKPLPRWTIVIAKVAAAWMVTAAVVVACVVASGLIVLTGEEGYGLTLAFVVAVLAGSLTYSALFVGLSIRFGRALI 164          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: UPI00066C040E (ABC transporter permease subunit n=1 Tax=Streptomyces sp. SBT349 TaxID=1580539 RepID=UPI00066C040E)

HSP 1 Score: 76.6 bits (187), Expect = 5.530e-14
Identity = 55/163 (33.74%), Postives = 90/163 (55.21%), Query Frame = 1
Query:    1 MISWPVYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            M +  V RL+ R++L  RR L L  L A+ +V AV+  A+G +D R     +L    + ++   I V+ G+GAI  E +DG+I+YL+S PL R+T++ TK+  A  V +A     ++ AG++  G+   +       V  A++++ Y AV   L  +SR  VV
Sbjct:    1 MYNHTVARLTYRALLGRRRALILLSLPALLLVIAVVVRALGGMDDRAA-TEILGAFALASMVPLIGVIAGTGAIAPEIDDGSIVYLLSKPLDRMTIIVTKLFVAIGVTVAFTTVPILLAGMILNGNSQQIATAFT--VAAAVASVAYSAVFLLLGTVSRNAVV 160          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A1F2XB04_9ACTN (Uncharacterized protein n=1 Tax=Actinobacteria bacterium RBG_16_68_21 TaxID=1797204 RepID=A0A1F2XB04_9ACTN)

HSP 1 Score: 76.6 bits (187), Expect = 6.410e-14
Identity = 59/165 (35.76%), Postives = 98/165 (59.39%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAV------VLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRA-DVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            + R+SLR  L G+R+LALG++  +P  A V++ +  +L  R   A + Q    P    F+ V      V+GSGA+GDER DGT+ +L+  P+ R ++V  K++A+W  A A++  + + A +V+LG R+ D   +L  ++GVA+S + Y AV   L  ++ R V+
Sbjct:    7 IVRVSLRQALGGKRILALGLVGLIP--ALVMWLSSRNLTAR---AAMNQFHDAPFAILFLMVLPICSLVIGSGAMGDERRDGTLSFLLLRPIPRSSIVGAKLVASWLAATAIVVGSGVVA-VVALGVRSGDYSPLLPVIIGVAISTMAYTAVFLLLGHLTSRAVL 165          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A1W7D5T6_9ACTN (Uncharacterized protein n=2 Tax=unclassified Streptomyces TaxID=2593676 RepID=A0A1W7D5T6_9ACTN)

HSP 1 Score: 76.3 bits (186), Expect = 7.710e-14
Identity = 55/163 (33.74%), Postives = 88/163 (53.99%), Query Frame = 1
Query:    1 MISWPVYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            M +  V RL+ R++L  RR L L  L AV ++ AV   A+   D R     +L    + ++   + V+ G+GAI  E +DG+I+YL+S PL R T++ TK++ A  V +A     ++ AGL+  G+   +       VG A++++ Y AV   L  +SR  VV
Sbjct:    1 MYNHTVARLTYRALLGRRRALILCALPAVLLIIAVAVRALSGADDRAA-TEILGGFALASMVPLVGVIAGTGAIAPEIDDGSIVYLLSKPLDRRTIITTKLIVAIGVTLAFTTVPILVAGLILNGNSQQIATAFT--VGAAVASVAYSAVVLLLGTVSRNAVV 160          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A5P0YQE2_9ACTN (ABC transporter permease subunit n=2 Tax=Streptomyces TaxID=1883 RepID=A0A5P0YQE2_9ACTN)

HSP 1 Score: 74.3 bits (181), Expect = 4.050e-13
Identity = 53/158 (33.54%), Postives = 84/158 (53.16%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            V RL+ R++L  RR L L  L A+ +  AV+    G  D  +    LL    + T+   I V++G+GAIG E +DG+I+YL+S PL R T++ TK+  A  V     A  V+ AGL+ +G    +       +G  ++++ YC +   +  ISR  V+
Sbjct:    6 VARLTYRALLGRRRALILCALPALLLAIAVLVRVTGVADDNVA-TNLLGGFALATLVPLIGVIVGTGAIGPEIDDGSIVYLLSKPLKRSTIILTKLTVAVGVTFLFAALPVLLAGLIMVGGSQQIAVAY--AIGTVVASVAYCTLFLLIGTISRNAVI 160          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: K4R8E9_STRDJ (Integral membrane protein n=228 Tax=Actinomycetia TaxID=1760 RepID=K4R8E9_STRDJ)

HSP 1 Score: 73.9 bits (180), Expect = 5.570e-13
Identity = 54/158 (34.18%), Postives = 87/158 (55.06%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            V RL+ R++L  RR L LG L  + +V +VI   +   D ++  + LL  L + T+   I V+ G+GAIG E +DG+++YL+S P+ R T++ TK++ A  V M   A   + AGLV  G+   +       V   ++++ Y A+   L  +SR  VV
Sbjct:    6 VARLTYRALLGRRRALILGALPLLLIVISVIVRGLAGADDQVA-SDLLGGLALATMVPIIGVIAGTGAIGPEIDDGSVVYLLSKPIKRPTIIFTKLIVAVAVTMVFSAVPTLIAGLVLNGNGQQIAVAYT--VAALVASIAYAALFLLLGTVSRHAVV 160          
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Match: A0A100J5I4_9ACTN (ABC-2 family transporter protein n=6 Tax=Streptomyces TaxID=1883 RepID=A0A100J5I4_9ACTN)

HSP 1 Score: 73.9 bits (180), Expect = 5.570e-13
Identity = 55/158 (34.81%), Postives = 86/158 (54.43%), Query Frame = 1
Query:   16 VYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWARLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATKVLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAVCAWLSMISRRPVV 489
            V RL+ R++L  RR L LG L  + +V AVI  A+   D +     LL  L + T+   I V+ G+GAIG E +DG+++YL+S P+ R T+++TK++ A  V M   A   + AG +  G+   +       V   ++++ Y AV   L  +SR  VV
Sbjct:    6 VARLTYRALLGRRRALILGALPMLLIVIAVIVRALAGADDQTA-VDLLGGLGLATMVPIIGVIAGTGAIGPEIDDGSVVYLLSKPIKRPTIISTKLIVAIAVTMVFSALPTLVAGFILNGNGQQIAVAYT--VAALVASIAYAAVFLLLGTVSRHAVV 160          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59267.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C3DB0EA3.650e-7572.22ABC transporter permease n=1 Tax=Miltoncostaea mar... [more]
UPI001C3E3ACE1.800e-7072.67ABC transporter permease n=1 Tax=Miltoncostaea oce... [more]
A0A2A9HF01_CHLB21.760e-1938.51ABC-2 type transport system permease protein n=3 T... [more]
A0A2N2LMS8_9CHLR4.280e-1435.63ABC transporter permease n=1 Tax=Chloroflexi bacte... [more]
UPI00066C040E5.530e-1433.74ABC transporter permease subunit n=1 Tax=Streptomy... [more]
A0A1F2XB04_9ACTN6.410e-1435.76Uncharacterized protein n=1 Tax=Actinobacteria bac... [more]
A0A1W7D5T6_9ACTN7.710e-1433.74Uncharacterized protein n=2 Tax=unclassified Strep... [more]
A0A5P0YQE2_9ACTN4.050e-1333.54ABC transporter permease subunit n=2 Tax=Streptomy... [more]
K4R8E9_STRDJ5.570e-1334.18Integral membrane protein n=228 Tax=Actinomycetia ... [more]
A0A100J5I4_9ACTN5.570e-1334.81ABC-2 family transporter protein n=6 Tax=Streptomy... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59267contigP-wetherbeei_contig59267:11..499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1116232.AHBF01000043_gene2925
PFAMsABC2_membrane_2,ABC2_membrane_4
Model size489
Max annot lvl201174|Actinobacteria
KEGG koko:K01992
KEGG TC3.A.1
KEGG ModuleM00254
Hectar predicted targeting categorysignal anchor
Exons1
Evalue9.12e-14
EggNOG OGsCOG1277@1|root,COG1277@2|Bacteria,2GK3E@201174|Actinobacteria
DescriptionABC-2 family transporter protein
Cds size489
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.805358-CDS-P-wetherbeei_contig59267:10..4991683186875.805358-CDS-P-wetherbeei_contig59267:10..499Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59267 11..499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59267.1.1prot_P-wetherbeei_contig59267.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59267 11..499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59267.1.1

>prot_P-wetherbeei_contig59267.1.1 ID=prot_P-wetherbeei_contig59267.1.1|Name=mRNA_P-wetherbeei_contig59267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
MISWPVYRLSLRSILDGRRVLALGVLAAVPVVAAVIFAAVGDLDPRIFWA
RLLQRLVIPTVTAFIAVVLGSGAIGDEREDGTILYLVSTPLSRLTLVATK
VLAAWTVAMALLAPAVIAAGLVSLGDRADVPQILWPLVGVALSALCYCAV
CAWLSMISRRPVV
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mRNA from alignment at P-wetherbeei_contig59267:11..499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59267.1.1 ID=mRNA_P-wetherbeei_contig59267.1.1|Name=mRNA_P-wetherbeei_contig59267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig59267:11..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTCCTGGCCGGTCTACCGGCTCTCCCTGCGCAGCATCCTCGATGG TCGGCGCGTCCTGGCGCTCGGGGTGCTGGCGGCCGTGCCGGTGGTGGCCG CGGTGATCTTCGCCGCGGTCGGCGATCTCGACCCGAGGATCTTCTGGGCG CGCCTGCTGCAGCGGCTGGTGATCCCCACGGTGACGGCGTTCATCGCCGT GGTGTTGGGCTCCGGCGCGATCGGCGACGAGCGCGAGGACGGCACCATCC TCTATCTGGTCTCCACGCCGCTGTCGCGGCTGACGCTGGTGGCCACAAAG GTGCTCGCCGCGTGGACCGTGGCGATGGCGCTGCTCGCCCCGGCCGTCAT CGCGGCCGGGCTGGTCAGCCTCGGGGATCGCGCCGACGTGCCCCAGATCC TCTGGCCACTGGTGGGCGTGGCCCTCAGCGCGCTCTGCTACTGCGCCGTC TGCGCGTGGCTGTCGATGATCAGCCGCCGCCCGGTGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59267:11..499+

>mRNA_P-wetherbeei_contig59267.1.1 ID=mRNA_P-wetherbeei_contig59267.1.1|Name=mRNA_P-wetherbeei_contig59267.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig59267:11..499+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCTCCTGGCCGGTCTACCGGCTCTCCCTGCGCAGCATCCTCGATGG
TCGGCGCGTCCTGGCGCTCGGGGTGCTGGCGGCCGTGCCGGTGGTGGCCG
CGGTGATCTTCGCCGCGGTCGGCGATCTCGACCCGAGGATCTTCTGGGCG
CGCCTGCTGCAGCGGCTGGTGATCCCCACGGTGACGGCGTTCATCGCCGT
GGTGTTGGGCTCCGGCGCGATCGGCGACGAGCGCGAGGACGGCACCATCC
TCTATCTGGTCTCCACGCCGCTGTCGCGGCTGACGCTGGTGGCCACAAAG
GTGCTCGCCGCGTGGACCGTGGCGATGGCGCTGCTCGCCCCGGCCGTCAT
CGCGGCCGGGCTGGTCAGCCTCGGGGATCGCGCCGACGTGCCCCAGATCC
TCTGGCCACTGGTGGGCGTGGCCCTCAGCGCGCTCTGCTACTGCGCCGTC
TGCGCGTGGCTGTCGATGATCAGCCGCCGCCCGGTGGTG
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