mRNA_P-wetherbeei_contig59251.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59251.1.1
Unique NamemRNA_P-wetherbeei_contig59251.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A3C0TUN6_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C0TUN6_9PROT)

HSP 1 Score: 138 bits (347), Expect = 6.480e-37
Identity = 66/103 (64.08%), Postives = 80/103 (77.67%), Query Frame = 1
Query:   28 AMTLLQAGATRASLEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQINTTLT 336
            A  LL+ G T AS EGQI+AA  VD+FS+R++  GMLTVNSRGSSDV+A+L D RGNP+ASNDDGG GYNF L  P+ PG YLL+V+HCCGG G Y ++  LT
Sbjct:  281 ATPLLRPGETEASREGQIAAAGAVDIFSIRVASMGMLTVNSRGSSDVSARLLDQRGNPIASNDDGGNGYNFALRAPLTPGRYLLAVKHCCGGGGNYHLDAALT 383          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A352KB49_9PROT (PPC domain-containing protein (Fragment) n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A352KB49_9PROT)

HSP 1 Score: 119 bits (299), Expect = 9.430e-33
Identity = 57/111 (51.35%), Postives = 78/111 (70.27%), Query Frame = 1
Query:    1 DDYGATARTAMTLLQAGATRASLEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQINTTL 333
            DD+G T  TA  LL  GA  AS+ G I  A DVDMFSL ++ PG LT+ S G +D+TA L+D+ G  V S+D+ G+ YNF + + V PGTY+L+V+HCC G+G+YQ++T L
Sbjct:    1 DDHGDTTATATPLLGGGALTASITGHIGGAGDVDMFSLTVTAPGNLTIASSGPTDITASLSDSDGTLVGSDDNSGSRYNFAVQSAVTPGTYVLTVRHCCSGSGRYQLDTVL 111          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A2E2YC05_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E2YC05_9PROT)

HSP 1 Score: 75.5 bits (184), Expect = 1.150e-13
Identity = 31/83 (37.35%), Postives = 55/83 (66.27%), Query Frame = 1
Query:   76 QISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDAR-GNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQI 321
            +I  + +V  + L ++EP  ++++S G SD+ A+++D R G  + ++DDGG GYNF ++ P+  G Y++ VQHCC G G + +
Sbjct:  290 RIGVSGEVKRYKLILNEPQKVSISSNGPSDLIARISDKRTGKVIDTDDDGGKGYNFSISQPLQAGEYIIEVQHCCAGTGTFSL 372          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A2D7CM24_9PROT (Uncharacterized protein n=2 Tax=Rhodospirillaceae TaxID=41295 RepID=A0A2D7CM24_9PROT)

HSP 1 Score: 60.5 bits (145), Expect = 2.510e-8
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1
Query:  142 VNSRGSSDVTAKLTDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQI 321
            +NSRG +DV   +   +G  + S+DD G  YNF +   + PG Y+LSV+HCC G G + +
Sbjct:  316 LNSRGPTDVVGAILTKKGKIILSDDDSGGNYNFAIHQKLPPGDYILSVKHCCFGEGPFSL 375          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A6J4Y492_9DELT (Type IV fimbrial biogenesis protein PilY1 n=1 Tax=Olavius algarvensis Delta 1 endosymbiont TaxID=334747 RepID=A0A6J4Y492_9DELT)

HSP 1 Score: 60.1 bits (144), Expect = 3.990e-8
Identity = 32/88 (36.36%), Postives = 50/88 (56.82%), Query Frame = 1
Query:   64 SLEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGN-GKYQIN 324
            S+ G I +  D D F +     G+LT  +   SD +  L D  GNP+A+++DGGAG NF ++  V+PG Y + V+    G+ G Y ++
Sbjct:  838 SIGGNIESGGDEDYFKVVFWGTGILTAYTTDGSDPSGTLLDEAGNPIAADEDGGAGNNFRISQTVDPGVYYVVVKEKNSGDTGSYTLH 925          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A2E9UXE7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E9UXE7_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 3.010e-7
Identity = 24/60 (40.00%), Postives = 36/60 (60.00%), Query Frame = 1
Query:  142 VNSRGSSDVTAKLTDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQI 321
            + SRG +DV   +   +G  + S+DD G  YNF +   + PG Y+LSV+HCC G G + +
Sbjct:  306 LKSRGPTDVVGAIFTKKGKIILSDDDSGRNYNFAIHQKLPPGDYILSVRHCCFGEGPFSL 365          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A6L7MV59_9GAMM (PPC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7MV59_9GAMM)

HSP 1 Score: 55.1 bits (131), Expect = 2.040e-6
Identity = 33/107 (30.84%), Postives = 54/107 (50.47%), Query Frame = 1
Query:   31 MTLLQAGATRAS---------LEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDARGNPVASNDDGGA-GYNFGLTTPVNPGTYLLSVQHCCGGNGKYQI 321
            M++L  G TRA+          E  +   +DVD+F + +     + V S G++D  A L+D+ G  +A+NDD  A   NF +   +  G Y L+V+   G  G Y++
Sbjct:  130 MSMLDDGNTRATSTVIAFGVRTEASLETRDDVDVFRIELQGRAAVAVQSGGTTDTMAVLSDSEGGTIAANDDASATSLNFRIVETLEGGVYYLTVRGSGGATGAYRV 236          
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Match: A0A6L7XSQ2_9GAMM (PPC domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L7XSQ2_9GAMM)

HSP 1 Score: 53.1 bits (126), Expect = 9.350e-6
Identity = 34/107 (31.78%), Postives = 54/107 (50.47%), Query Frame = 1
Query:    4 DYGATARTAMTLLQAGATRASLEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKLTDARGNPVASNDDGGA-GYNFGLTTPVNPGTYLLSVQHCCGGNGKYQI 321
            D G T  T+  +     + ASLE +    +DVD+F + +     + V S G++D  A L+D+ G  +A+NDD  A   NF +   +  G Y L+V    G  G Y++
Sbjct:   41 DDGNTRATSTVIAFGVRSEASLETR----DDVDVFRIELQGRAEIAVQSGGTTDTMAALSDSEGGAIATNDDASATSLNFRIVETLEGGVYYLTVSGSNGATGPYRV 143          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59251.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A3C0TUN6_9PROT6.480e-3764.08Uncharacterized protein (Fragment) n=1 Tax=Alphapr... [more]
A0A352KB49_9PROT9.430e-3351.35PPC domain-containing protein (Fragment) n=2 Tax=A... [more]
A0A2E2YC05_9PROT1.150e-1337.35Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2D7CM24_9PROT2.510e-841.67Uncharacterized protein n=2 Tax=Rhodospirillaceae ... [more]
A0A6J4Y492_9DELT3.990e-836.36Type IV fimbrial biogenesis protein PilY1 n=1 Tax=... [more]
A0A2E9UXE7_9PROT3.010e-740.00Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A6L7MV59_9GAMM2.040e-630.84PPC domain-containing protein n=1 Tax=Gammaproteob... [more]
A0A6L7XSQ2_9GAMM9.350e-631.78PPC domain-containing protein n=1 Tax=Gammaproteob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59251contigP-wetherbeei_contig59251:25..369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1265845.PWEIH_09893
PFAMsBig_2,F5_F8_type_C,Peptidase_M6
Model size345
Max annot lvl91061|Bacilli
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.1e-06
EggNOG OGsCOG4412@1|root,COG5492@1|root,COG4412@2|Bacteria,COG5492@2|Bacteria,1UYZF@1239|Firmicutes,4HF2J@91061|Bacilli
DescriptionM6 family metalloprotease domain protein
Cds size315
COG categoryN
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.5534284-UTR-P-wetherbeei_contig59251:24..541683186875.5534284-UTR-P-wetherbeei_contig59251:24..54Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59251 25..54 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.564431-CDS-P-wetherbeei_contig59251:54..3691683186875.564431-CDS-P-wetherbeei_contig59251:54..369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59251 55..369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59251.1.1prot_P-wetherbeei_contig59251.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59251 55..369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59251.1.1

>prot_P-wetherbeei_contig59251.1.1 ID=prot_P-wetherbeei_contig59251.1.1|Name=mRNA_P-wetherbeei_contig59251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MTLLQAGATRASLEGQISAANDVDMFSLRISEPGMLTVNSRGSSDVTAKL
TDARGNPVASNDDGGAGYNFGLTTPVNPGTYLLSVQHCCGGNGKYQINTT
LTAR*
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mRNA from alignment at P-wetherbeei_contig59251:25..369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59251.1.1 ID=mRNA_P-wetherbeei_contig59251.1.1|Name=mRNA_P-wetherbeei_contig59251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=345bp|location=Sequence derived from alignment at P-wetherbeei_contig59251:25..369+ (Phaeothamnion wetherbeei SAG_119_79)
GATGATTATGGTGCAACTGCCAGAACCGCAATGACACTGTTACAGGCGGG CGCAACACGCGCCAGCCTCGAAGGACAAATTAGTGCAGCCAATGATGTCG ATATGTTTTCGCTGCGCATATCTGAGCCAGGCATGCTGACGGTGAATTCA CGCGGATCAAGTGACGTCACGGCCAAATTGACAGACGCACGCGGCAATCC TGTCGCCAGTAACGATGATGGCGGGGCGGGCTATAATTTCGGGCTTACCA CACCGGTTAATCCGGGCACCTATCTGCTTTCGGTCCAGCATTGCTGTGGC GGCAATGGCAAGTATCAGATCAATACCACGCTGACGGCAAGATAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59251:25..369+

>mRNA_P-wetherbeei_contig59251.1.1 ID=mRNA_P-wetherbeei_contig59251.1.1|Name=mRNA_P-wetherbeei_contig59251.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig59251:25..369+ (Phaeothamnion wetherbeei SAG_119_79)
ATGACACTGTTACAGGCGGGCGCAACACGCGCCAGCCTCGAAGGACAAAT
TAGTGCAGCCAATGATGTCGATATGTTTTCGCTGCGCATATCTGAGCCAG
GCATGCTGACGGTGAATTCACGCGGATCAAGTGACGTCACGGCCAAATTG
ACAGACGCACGCGGCAATCCTGTCGCCAGTAACGATGATGGCGGGGCGGG
CTATAATTTCGGGCTTACCACACCGGTTAATCCGGGCACCTATCTGCTTT
CGGTCCAGCATTGCTGTGGCGGCAATGGCAAGTATCAGATCAATACCACG
CTGACGGCAAGATAA
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