mRNA_P-wetherbeei_contig59243.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59243.1.1
Unique NamemRNA_P-wetherbeei_contig59243.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A6N7GN19_9HYPH (Magnesium transport protein CorA n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GN19_9HYPH)

HSP 1 Score: 249 bits (637), Expect = 2.400e-80
Identity = 126/164 (76.83%), Postives = 145/164 (88.41%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMAL 492
            IDRAADILE+IG DVDQVS  IF+  ++ ++ +R+Y+ IL++IGRKGDLTSKVRESLVSIGR+LLYLANEAD MKWAKD R  L+GMQRDV SLSDH  YLSNKITFLLDAMLGVV+LEQNNIIKLFSV AV+FMPPTL+ASIYGMNF+ MPEL+W YGY MA+
Sbjct:  143 IDRAADILERIGLDVDQVSHDIFEPEEAGTSGARNYRSILKAIGRKGDLTSKVRESLVSIGRVLLYLANEADIMKWAKDSRGELRGMQRDVQSLSDHAAYLSNKITFLLDAMLGVVNLEQNNIIKLFSVVAVIFMPPTLIASIYGMNFEVMPELKWQYGYLMAI 306          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A537NBS7_9PROT (Magnesium transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537NBS7_9PROT)

HSP 1 Score: 244 bits (624), Expect = 2.160e-78
Identity = 122/166 (73.49%), Postives = 143/166 (86.14%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDR ADILE++G +VDQVS  IF+  +  + R+RSY  ILR+IGRKGDL SKVRESLVSIGRLLLYLANEAD+M+WAK+ RA L+GMQRDV SLSDH  YLSNKI FLLDAMLGVV++EQNN+IK+FSVAAVV MPPTL+ASIYGMNFK MPEL+W + YP+AL +
Sbjct:  142 IDRTADILERVGVEVDQVSHDIFEPEEERADRTRSYNQILRAIGRKGDLASKVRESLVSIGRLLLYLANEADSMRWAKEPRAQLRGMQRDVHSLSDHAAYLSNKIQFLLDAMLGVVTIEQNNVIKIFSVAAVVLMPPTLIASIYGMNFKHMPELDWPFAYPLALVL 307          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A1Q7BGU9_9PROT (Magnesium transporter n=5 Tax=unclassified Alphaproteobacteria TaxID=33807 RepID=A0A1Q7BGU9_9PROT)

HSP 1 Score: 244 bits (622), Expect = 4.340e-78
Identity = 121/166 (72.89%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDRAADILE+IG++VDQ+S  IF+     + RSRSY +IL++IG+KGDL SKVRESLVSIGRLLLYLANEAD+M+WAK+ RA L+GMQRDV SLSDH  YLSNKI FLLDAMLGVV++EQNN+IK+FSVAAV  MPPTL+ASIYGMNFK MPEL+W +GYP+A+ +
Sbjct:  142 IDRAADILERIGSEVDQISHDIFEPDAGPADRSRSYNEILKAIGKKGDLASKVRESLVSIGRLLLYLANEADSMRWAKEPRAQLRGMQRDVHSLSDHAAYLSNKIQFLLDAMLGVVTIEQNNVIKIFSVAAVALMPPTLIASIYGMNFKHMPELDWPFGYPLAIML 307          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A3S4DIV0_9HYPH (Magnesium transport protein CorA n=2 Tax=Rhodoplanes piscinae TaxID=444923 RepID=A0A3S4DIV0_9HYPH)

HSP 1 Score: 242 bits (618), Expect = 1.700e-77
Identity = 125/166 (75.30%), Postives = 144/166 (86.75%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDR+ADILE+IG++VD +S+ IF   D A     + QDILR+IGR GDLTSK RE LVSIGRL+LYLANEAD M+WAKDQRA+LKGMQRDV SLSDH TYLSNKITFLLDAM+GVV++EQNNIIK+FSVAAVV MPPTLVASIYGMNF+ MPELE+ YGYPMA+ +
Sbjct:  142 IDRSADILERIGSEVDAISRTIFD-PDRAGGDRIASQDILRAIGRTGDLTSKARECLVSIGRLVLYLANEADVMRWAKDQRAILKGMQRDVQSLSDHATYLSNKITFLLDAMVGVVTIEQNNIIKIFSVAAVVLMPPTLVASIYGMNFRHMPELEFTYGYPMAIVL 306          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: UPI0017B1A1E7 (Magnesium transporter CorA family protein n=1 Tax=Rhodoplanes sp. TaxID=1968906 RepID=UPI0017B1A1E7)

HSP 1 Score: 241 bits (616), Expect = 3.410e-77
Identity = 127/166 (76.51%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDR+ADILE+IG++VD VS+ IF+       R +S QDILR+IGR GDLTSK RE LVSIGRLLLYLANEAD M+WAKDQRA LKGMQRDV SLSDH TYL+NKITFLLDAM+GVV++EQNNIIK+FSVAAVV MPPTL+ASIYGMNFK +PELE+AYGYPMAL +
Sbjct:  142 IDRSADILERIGSEVDGVSRTIFEPERPDGERIQS-QDILRAIGRTGDLTSKARECLVSIGRLLLYLANEADGMRWAKDQRATLKGMQRDVQSLSDHATYLANKITFLLDAMVGVVTIEQNNIIKIFSVAAVVLMPPTLIASIYGMNFKHLPELEFAYGYPMALLL 306          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A537SRR6_9PROT (Magnesium transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SRR6_9PROT)

HSP 1 Score: 240 bits (612), Expect = 1.420e-76
Identity = 119/166 (71.69%), Postives = 144/166 (86.75%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDRAADILE+IG++VDQ+S  IF+     + R+RSY +IL++IG+KGDL SKVRESLVSIGRLLLYLANEA++M+WAK+ RA L+GMQRDV SLSDH  YLSNKI FLLDAMLGVV++EQNN+IK+FSVAAV  MPPTL+ASIYGMNFK MPEL+W  GYP+A+ +
Sbjct:  142 IDRAADILERIGSEVDQISHDIFEPEAEGADRTRSYNEILKAIGKKGDLASKVRESLVSIGRLLLYLANEAESMRWAKEPRAQLRGMQRDVHSLSDHAAYLSNKIQFLLDAMLGVVTIEQNNVIKIFSVAAVALMPPTLIASIYGMNFKHMPELDWWLGYPLAIVL 307          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A6L5FRT9_9HYPH (Magnesium transport protein CorA n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FRT9_9HYPH)

HSP 1 Score: 237 bits (605), Expect = 1.580e-75
Identity = 121/166 (72.89%), Postives = 145/166 (87.35%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            +DRAADILE++G ++D+VS+ IF+S +SA A S  Y+ IL +IGRKGDLTSKVRESLVSIGRLLL+LANEA+ M+W KD RA LK MQRDV SLSDH TYLSNKITFLLDA++GVV++EQNNIIK+FSVAAV  +PPTLVASIYGMNFK MPE++W YGYP A+A+
Sbjct:  142 VDRAADILERVGMEIDRVSRDIFES-ESAGATSAHYKGILTTIGRKGDLTSKVRESLVSIGRLLLFLANEAEGMRWNKDTRAQLKSMQRDVQSLSDHATYLSNKITFLLDAVVGVVTIEQNNIIKIFSVAAVALLPPTLVASIYGMNFKYMPEVDWRYGYPFAIAL 306          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A327KZF7_9HYPH (Magnesium transporter n=2 Tax=Rhodoplanes TaxID=29407 RepID=A0A327KZF7_9HYPH)

HSP 1 Score: 236 bits (603), Expect = 3.160e-75
Identity = 123/166 (74.10%), Postives = 143/166 (86.14%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDR+ADILE+IG +VD +S+ IF+     S R  S Q+ILRS+GR GDLTSK RE LVSIGRL+LYLANEAD ++WAKDQRA LKGMQRDV SLSDH TYL+NKITFLLDAM+GVV++EQNNIIK+FSVAAVV MPPTLVASIYGMNFK MPEL++ +GYPMAL +
Sbjct:  142 IDRSADILERIGGEVDAISRTIFEPDRPGSGRIPS-QEILRSVGRTGDLTSKARECLVSIGRLVLYLANEADGLRWAKDQRATLKGMQRDVQSLSDHATYLANKITFLLDAMVGVVTIEQNNIIKIFSVAAVVLMPPTLVASIYGMNFKHMPELDFTFGYPMALIL 306          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A346A4W7_9HYPH (Magnesium transport protein CorA n=1 Tax=Pseudolabrys taiwanensis TaxID=331696 RepID=A0A346A4W7_9HYPH)

HSP 1 Score: 235 bits (599), Expect = 1.240e-74
Identity = 118/166 (71.08%), Postives = 143/166 (86.14%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            +DR+ADILE+IGADVDQ+S AIF+  +     +  Y DIL+++GRKGDLTSKVRESLVS+GR+L +LANEA+ MKW KD R  L+ MQRDV SLSDH TYLS K+TFLLDAMLGVV+L+QNNIIK+FSVAAVVFMPPTLVASIYGMNFK+MPEL+W +GYP+A+ +
Sbjct:  142 VDRSADILERIGADVDQISHAIFEPEEQGGRGT--YNDILKALGRKGDLTSKVRESLVSVGRVLSFLANEAEGMKWPKDARTQLQSMQRDVVSLSDHATYLSAKVTFLLDAMLGVVNLQQNNIIKIFSVAAVVFMPPTLVASIYGMNFKSMPELQWHFGYPIAIGM 305          
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Match: A0A537L0C8_9PROT (Magnesium transporter n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537L0C8_9PROT)

HSP 1 Score: 234 bits (596), Expect = 3.740e-74
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = 1
Query:    1 IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLTSKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTYLSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKAMPELEWAYGYPMALAI 498
            IDRAADILE+ GAD+D+ S  IF+       R+ +Y+ ILR+IGRKGDLTSKVRESLVSIGRL+L+LANEAD +KW K+ R+ LK MQRDV SLSDH +YL NK+TFLLDAM+GV+S+EQNNIIKLFSVAAVV MPPTL+ASIYGMNFK MPEL+W +GYPMAL +
Sbjct:  142 IDRAADILERAGADIDRASHDIFEPEGRRVDRTITYRYILRTIGRKGDLTSKVRESLVSIGRLVLFLANEADALKWPKEMRSQLKVMQRDVTSLSDHASYLGNKVTFLLDAMIGVMSVEQNNIIKLFSVAAVVLMPPTLIASIYGMNFKHMPELDWWFGYPMALVL 307          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59243.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GN19_9HYPH2.400e-8076.83Magnesium transport protein CorA n=1 Tax=Hyphomicr... [more]
A0A537NBS7_9PROT2.160e-7873.49Magnesium transporter n=1 Tax=Alphaproteobacteria ... [more]
A0A1Q7BGU9_9PROT4.340e-7872.89Magnesium transporter n=5 Tax=unclassified Alphapr... [more]
A0A3S4DIV0_9HYPH1.700e-7775.30Magnesium transport protein CorA n=2 Tax=Rhodoplan... [more]
UPI0017B1A1E73.410e-7776.51Magnesium transporter CorA family protein n=1 Tax=... [more]
A0A537SRR6_9PROT1.420e-7671.69Magnesium transporter n=1 Tax=Alphaproteobacteria ... [more]
A0A6L5FRT9_9HYPH1.580e-7572.89Magnesium transport protein CorA n=1 Tax=Hyphomicr... [more]
A0A327KZF7_9HYPH3.160e-7574.10Magnesium transporter n=2 Tax=Rhodoplanes TaxID=29... [more]
A0A346A4W7_9HYPH1.240e-7471.08Magnesium transport protein CorA n=1 Tax=Pseudolab... [more]
A0A537L0C8_9PROT3.740e-7471.69Magnesium transporter n=1 Tax=Alphaproteobacteria ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59243contigP-wetherbeei_contig59243:1..498 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog316056.RPC_4290
Preferred namecorA
PFAMsCorA
Model size498
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03284
KEGG TC1.A.35.1,1.A.35.3
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.23e-74
EggNOG OGsCOG0598@1|root,COG0598@2|Bacteria,1MWMP@1224|Proteobacteria,2TQQD@28211|Alphaproteobacteria,3JTS3@41294|Bradyrhizobiaceae
DescriptionCorA-like Mg2 transporter protein
Cds size498
COG categoryP
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.4598331-CDS-P-wetherbeei_contig59243:0..4981683186875.4598331-CDS-P-wetherbeei_contig59243:0..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59243 1..498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59243.1.1prot_P-wetherbeei_contig59243.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59243 1..498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59243.1.1

>prot_P-wetherbeei_contig59243.1.1 ID=prot_P-wetherbeei_contig59243.1.1|Name=mRNA_P-wetherbeei_contig59243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=166bp
IDRAADILEKIGADVDQVSQAIFQSADSASARSRSYQDILRSIGRKGDLT
SKVRESLVSIGRLLLYLANEADTMKWAKDQRAVLKGMQRDVGSLSDHVTY
LSNKITFLLDAMLGVVSLEQNNIIKLFSVAAVVFMPPTLVASIYGMNFKA
MPELEWAYGYPMALAI
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mRNA from alignment at P-wetherbeei_contig59243:1..498+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59243.1.1 ID=mRNA_P-wetherbeei_contig59243.1.1|Name=mRNA_P-wetherbeei_contig59243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59243:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGCGCCGCCGACATTCTGGAAAAGATCGGCGCCGATGTCGACCA GGTCAGCCAGGCGATCTTTCAGTCCGCCGATTCCGCCTCGGCGCGCTCGC GTAGCTATCAGGATATTTTGCGTTCGATCGGCCGCAAGGGCGATCTGACC TCGAAGGTCCGCGAAAGCCTGGTCTCGATCGGCAGGCTGCTGCTCTATCT CGCCAACGAGGCCGATACCATGAAATGGGCCAAGGACCAGCGCGCCGTGC TCAAGGGCATGCAGCGCGACGTCGGCTCGCTATCCGACCACGTCACCTAT CTGTCGAACAAGATCACCTTTTTGCTCGACGCCATGCTCGGTGTCGTCAG TCTGGAACAGAATAATATCATCAAACTGTTCTCGGTCGCCGCCGTGGTGT TCATGCCGCCGACCCTGGTCGCCTCGATCTATGGTATGAATTTCAAGGCG ATGCCGGAGCTGGAATGGGCCTATGGCTATCCGATGGCGCTTGCGATC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59243:1..498+

>mRNA_P-wetherbeei_contig59243.1.1 ID=mRNA_P-wetherbeei_contig59243.1.1|Name=mRNA_P-wetherbeei_contig59243.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=498bp|location=Sequence derived from alignment at P-wetherbeei_contig59243:1..498+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGACCGCGCCGCCGACATTCTGGAAAAGATCGGCGCCGATGTCGACCA
GGTCAGCCAGGCGATCTTTCAGTCCGCCGATTCCGCCTCGGCGCGCTCGC
GTAGCTATCAGGATATTTTGCGTTCGATCGGCCGCAAGGGCGATCTGACC
TCGAAGGTCCGCGAAAGCCTGGTCTCGATCGGCAGGCTGCTGCTCTATCT
CGCCAACGAGGCCGATACCATGAAATGGGCCAAGGACCAGCGCGCCGTGC
TCAAGGGCATGCAGCGCGACGTCGGCTCGCTATCCGACCACGTCACCTAT
CTGTCGAACAAGATCACCTTTTTGCTCGACGCCATGCTCGGTGTCGTCAG
TCTGGAACAGAATAATATCATCAAACTGTTCTCGGTCGCCGCCGTGGTGT
TCATGCCGCCGACCCTGGTCGCCTCGATCTATGGTATGAATTTCAAGGCG
ATGCCGGAGCTGGAATGGGCCTATGGCTATCCGATGGCGCTTGCGATC
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