mRNA_P-wetherbeei_contig59240.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59240.1.1
Unique NamemRNA_P-wetherbeei_contig59240.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A7C4TWC2_9HYPH (NfeD family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4TWC2_9HYPH)

HSP 1 Score: 102 bits (255), Expect = 6.760e-26
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    7 MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            MQ IID+   LG+WNWFI+A  ++LLE ++PGVHFMWFG+AAVAMG L L   +P+ +QL++FALI+L  I   RR+W      +D P LN RG QY
Sbjct:    1 MQAIIDFFWTLGAWNWFIIAIGLLLLEFLVPGVHFMWFGMAAVAMGVLALSFDIPVHWQLIIFALIALGAIYAVRRFWRAEMVASDEPNLNVRGAQY 97          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A7C2QZ05_9HYPH (NfeD family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QZ05_9HYPH)

HSP 1 Score: 95.1 bits (235), Expect = 7.540e-23
Identity = 45/97 (46.39%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            MQ +  +  GLG WNW ILAAL+ +LET++PGVHF+WFGIAAV +G + +   +   +Q+++F  IS+  + F RRY       +D P LN+R QQY
Sbjct:    1 MQSLFTFLFGLGVWNWLILAALLFILETLVPGVHFLWFGIAAVVVGAIAMGTDIAWQWQIIMFGAISVATVFFVRRYVRPDVAKSDLPDLNERAQQY 97          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A431NU27_9HYPH (NfeD family protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A431NU27_9HYPH)

HSP 1 Score: 94.4 bits (233), Expect = 1.770e-22
Identity = 46/99 (46.46%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 RVMQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            R M  I++   G G WNWFI A ++  LE I+PGVHF+WFG+AAVA G L L   L   FQL+ F   ++  + + RR+      P+D P LN RGQQY
Sbjct:    5 RAMSSIVNLLAGFGPWNWFIFAVVLFTLEMIVPGVHFVWFGVAAVATGALALATGLTWPFQLLAFGAFAVATVFWVRRFARPDASPSDLPDLNARGQQY 103          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A3N5N8V2_9HYPH (NfeD family protein n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A3N5N8V2_9HYPH)

HSP 1 Score: 91.7 bits (226), Expect = 1.720e-21
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            M  +  +  G G+WNWFIL A++  LET +PGVHF+WFGIAA+ +GGL L+  +   +Q++ F ++++  + + RRY       +D P LN+RGQQY
Sbjct:    1 MPSLYSFLSGFGAWNWFILGAILFALETFLPGVHFLWFGIAAIVVGGLALLTGITWPWQVIAFGVLAVATVFWVRRYVRPDVARSDLPNLNERGQQY 97          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: UPI000372761F (NfeD family protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000372761F)

HSP 1 Score: 91.7 bits (226), Expect = 1.860e-21
Identity = 49/101 (48.51%), Postives = 64/101 (63.37%), Query Frame = 1
Query:   16 IIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLP-------LPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            I+D   GLG WNWFI   L+M LET++PGVHF+WFG+AAV +G L+  L        L L +QLVLFA+IS+  + + RR+       +D   LNDRG QY
Sbjct:    2 IVDLVTGLGPWNWFIAGVLLMALETLVPGVHFLWFGLAAVVVGILVFALTASGLGEALSLPWQLVLFAVISVATVFWVRRFANAQNVESDEKDLNDRGAQY 102          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A2D7F8N9_9HYPH (NfeD domain-containing protein n=2 Tax=Hyphomicrobiaceae TaxID=45401 RepID=A0A2D7F8N9_9HYPH)

HSP 1 Score: 89.4 bits (220), Expect = 1.350e-20
Identity = 41/97 (42.27%), Postives = 63/97 (64.95%), Query Frame = 1
Query:    7 MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            MQP  D+   LG WNW IL+ ++ +LET++PGVHF+WFG+AA  +G L + + +    Q++LF +++L  + F R+Y   +  P+D P LN RG  Y
Sbjct:    1 MQPATDFLFSLGPWNWLILSVVLFVLETLVPGVHFVWFGVAATIVGVLAISIGMAWQMQVILFGVLALASVWFFRQYAKPSASPSDEPDLNVRGNSY 97          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A537RZQ6_9PROT (NfeD family protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537RZQ6_9PROT)

HSP 1 Score: 89.0 bits (219), Expect = 1.960e-20
Identity = 42/97 (43.30%), Postives = 64/97 (65.98%), Query Frame = 1
Query:    7 MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            MQ ++ +  G G WNW ILA ++  LETI+PGVHF+WFG+AAV +G L +   +   +Q++ F +I+++ + + RRY       +D P LN+RGQQY
Sbjct:    1 MQGLLAFFWGFGVWNWLILAVVLFTLETIVPGVHFLWFGLAAVIVGFLAMATGMSWPYQIIAFGIIAVLTVFWVRRYVRPDVAKSDLPDLNERGQQY 97          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A6I3KIK8_9HYPH (NfeD family protein n=3 Tax=Hyphomicrobium TaxID=81 RepID=A0A6I3KIK8_9HYPH)

HSP 1 Score: 87.4 bits (215), Expect = 7.660e-20
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   34 GLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
             LG+WNWFI+A  +  LE+++PGVHF+WFG+AAV +G L L L +   +QL+ FA+IS + + FARRY       +D P LN R  QY
Sbjct:    9 NLGAWNWFIVAVALFALESVVPGVHFVWFGVAAVIVGALGLTLDIAWEWQLITFAVISCITVFFARRYAAPDVARSDEPDLNARAVQY 96          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A800BB13_9BACT (NfeD family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A800BB13_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 4.340e-19
Identity = 44/94 (46.81%), Postives = 60/94 (63.83%), Query Frame = 1
Query:   16 IIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
            +IDY   LG+WNWF+LA  + +LETI+PGVHF+WFG AA  +G   +   +   +QL+ FA+IS V + F RRY +     +D P LN R  QY
Sbjct:    3 LIDYVWSLGAWNWFVLAVALFVLETIVPGVHFIWFGAAAFIVGIAGISFDIAWEWQLIAFAIISCVSVFFVRRYASPDMAVSDEPELNLRASQY 96          
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Match: A0A4R1HDA5_9GAMM (NfeD domain-containing protein n=1 Tax=Thiogranum longum TaxID=1537524 RepID=A0A4R1HDA5_9GAMM)

HSP 1 Score: 83.6 bits (205), Expect = 2.170e-18
Identity = 41/89 (46.07%), Postives = 65/89 (73.03%), Query Frame = 1
Query:   34 GLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLMLVLP-LPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY 297
             +G W+W+ILAA++++LE   PG  F+W G+AAV +GG++ VLP +   +QL+LF+++S++ IV  R+Y+ +T   TD P LN RG+QY
Sbjct:    4 SIGHWHWWILAAVLIILEVFAPGAFFLWLGLAAVTVGGVVYVLPDMIWEYQLLLFSVLSVISIVIWRKYFRSTPADTDQPHLNRRGEQY 92          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59240.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4TWC2_9HYPH6.760e-2654.64NfeD family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A7C2QZ05_9HYPH7.540e-2346.39NfeD family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A431NU27_9HYPH1.770e-2246.46NfeD family protein n=1 Tax=Hyphomicrobiales bacte... [more]
A0A3N5N8V2_9HYPH1.720e-2143.30NfeD family protein n=1 Tax=Hyphomicrobiaceae bact... [more]
UPI000372761F1.860e-2148.51NfeD family protein n=1 Tax=Hyphomicrobium zavarzi... [more]
A0A2D7F8N9_9HYPH1.350e-2042.27NfeD domain-containing protein n=2 Tax=Hyphomicrob... [more]
A0A537RZQ6_9PROT1.960e-2043.30NfeD family protein n=1 Tax=Alphaproteobacteria ba... [more]
A0A6I3KIK8_9HYPH7.660e-2048.86NfeD family protein n=3 Tax=Hyphomicrobium TaxID=8... [more]
A0A800BB13_9BACT4.340e-1946.81NfeD family protein n=1 Tax=Planctomycetes bacteri... [more]
A0A4R1HDA5_9GAMM2.170e-1846.07NfeD domain-containing protein n=1 Tax=Thiogranum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59240contigP-wetherbeei_contig59240:1..297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1267005.KB911263_gene1337
Preferred nameMA20_06475
PFAMsNfeD
Model size297
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K07340
Hectar predicted targeting categorysignal anchor
GOsGO:0005575,GO:0005623,GO:0005886,GO:0016020,GO:0044464,GO:0071944
Exons1
Evalue2e-22
EggNOG OGsCOG1585@1|root,COG1585@2|Bacteria,1N241@1224|Proteobacteria,2UC8X@28211|Alphaproteobacteria,3N7B3@45401|Hyphomicrobiaceae
DescriptionNfeD-like C-terminal, partner-binding
Cds size291
COG categoryOU
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.4185812-CDS-P-wetherbeei_contig59240:0..2911683186875.4185812-CDS-P-wetherbeei_contig59240:0..291Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59240 1..291 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186875.4296336-UTR-P-wetherbeei_contig59240:291..2971683186875.4296336-UTR-P-wetherbeei_contig59240:291..297Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59240 292..297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59240.1.1prot_P-wetherbeei_contig59240.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59240 1..291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59240.1.1

>prot_P-wetherbeei_contig59240.1.1 ID=prot_P-wetherbeei_contig59240.1.1|Name=mRNA_P-wetherbeei_contig59240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
MQPIIDYAVGLGSWNWFILAALMMLLETIIPGVHFMWFGIAAVAMGGLML
VLPLPLAFQLVLFALISLVVIVFARRYWTTTGQPTDTPALNDRGQQY
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mRNA from alignment at P-wetherbeei_contig59240:1..297-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59240.1.1 ID=mRNA_P-wetherbeei_contig59240.1.1|Name=mRNA_P-wetherbeei_contig59240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=297bp|location=Sequence derived from alignment at P-wetherbeei_contig59240:1..297- (Phaeothamnion wetherbeei SAG_119_79)
CGCGTTATGCAGCCGATCATCGACTATGCCGTTGGCCTCGGATCATGGAA CTGGTTCATCCTTGCAGCCCTCATGATGCTGCTGGAAACTATCATCCCCG GGGTTCACTTCATGTGGTTCGGCATCGCCGCCGTCGCGATGGGCGGACTT ATGCTCGTCTTGCCGCTACCGCTCGCCTTCCAACTCGTACTGTTCGCACT GATATCGCTGGTCGTCATCGTGTTTGCGCGGCGCTACTGGACCACGACCG GACAGCCGACCGACACTCCAGCGTTGAACGACCGCGGTCAGCAATAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59240:1..297-

>mRNA_P-wetherbeei_contig59240.1.1 ID=mRNA_P-wetherbeei_contig59240.1.1|Name=mRNA_P-wetherbeei_contig59240.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig59240:1..297- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGCCGATCATCGACTATGCCGTTGGCCTCGGATCATGGAACTGGTT
CATCCTTGCAGCCCTCATGATGCTGCTGGAAACTATCATCCCCGGGGTTC
ACTTCATGTGGTTCGGCATCGCCGCCGTCGCGATGGGCGGACTTATGCTC
GTCTTGCCGCTACCGCTCGCCTTCCAACTCGTACTGTTCGCACTGATATC
GCTGGTCGTCATCGTGTTTGCGCGGCGCTACTGGACCACGACCGGACAGC
CGACCGACACTCCAGCGTTGAACGACCGCGGTCAGCAATAC
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