mRNA_P-wetherbeei_contig5916.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5916.1.1
Unique NamemRNA_P-wetherbeei_contig5916.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: D7FVR9_ECTSI (Heme-binding family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR9_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 1.020e-26
Identity = 74/165 (44.85%), Postives = 97/165 (58.79%), Query Frame = 1
Query:   19 SGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGA-------DESGR-YRVMQYNPPYTLPFRRRNEVAIRL 489
            SG+GFNTLAGYLFG N ++ +M MTTPV ID  S                        T R+MSFV+P+ + A  AP P     V++ DVA+GE  AV EF GF TDGEV  Q++ L  AL+ +A  +       D  GR YR+MQYNPPYTLP++R N +A+++
Sbjct:   96 SGEGFNTLAGYLFGDNKQEVAMDMTTPVNIDVTS------------------------TGRTMSFVMPKDVPAEEAPTP-RNPRVNVRDVAEGEVLAVREFPGFATDGEVGGQLDTLLWALQLEASTSASPWCARDPVGRSYRLMQYNPPYTLPWQRTNAIAVQV 235          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A6V1RB38_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1RB38_HETAK)

HSP 1 Score: 109 bits (272), Expect = 7.400e-25
Identity = 72/167 (43.11%), Postives = 91/167 (54.49%), Query Frame = 1
Query:    1 MDDPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQ----VEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRL 489
            MDDP  SG+GFNTLAGYLFG N  +E M MT PVAI                 S + DGG      R+M+FVLP      +APAP A A +++     G   A  EF GF T+GE+ RQ    +EAL  A   + +  +    Y V+QYNPPYTLP  RRNE+ + +
Sbjct:  234 MDDPFESGRGFNTLAGYLFGDNEAEEPMEMTIPVAI-----------------SRAADGG------RTMAFVLPSQYTPESAPAPKADANITVAQTKAGMMVAAVEFPGFATEGEIERQRVKLLEALEDAGEYEVKDPEA---YTVLQYNPPYTLPVFRRNELTVEV 374          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A7S2G1D3_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G1D3_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.400e-24
Identity = 71/163 (43.56%), Postives = 91/163 (55.83%), Query Frame = 1
Query:    4 DDPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRLV 492
            +DP  +G  FNTLA Y+FG N   ES++MTTPVAI                 S S DG       + MSFVLP  + A++APAP++   V + DV   +R A  EF GF TDGEV R +  L+  LR       + G Y ++QYNPPYTLPF R+NE+ I L 
Sbjct:  220 EDPFGAGASFNTLAEYIFGENDSKESLSMTTPVAI-----------------SRSADGS------QQMSFVLPGSLDASSAPAPIS-PRVIVSDVPT-KRVAAVEFPGFATDGEVSRVLSTLQQELRLAGLAPVDDGVYTLLQYNPPYTLPFLRKNEIIIDLA 357          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: R1FP20_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FP20_EMIHU)

HSP 1 Score: 106 bits (265), Expect = 3.860e-24
Identity = 77/159 (48.43%), Postives = 90/159 (56.60%), Query Frame = 1
Query:   22 GQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGAD-ESGRYRVMQYNPPYTLPFRRRNEVAIRLVE 495
            G GFN LA YLFG N+   +MAMTTPV ID                   V GGG  S   SMSFVLP   AA A P P A   V+L +V      AV  F G VTDGEVRRQ +AL AA+  D   A  E+G + V+QYN PY +P+RRRNE+AI + E
Sbjct:  234 GAGFNALASYLFGDNADGAAMAMTTPVGID-------------------VSGGGAAS---SMSFVLPRD-AARAPPRPNADGGVALDEV-PARIVAVKAFAGVVTDGEVRRQRDALEAAIEADGGTAPVEAGAFSVLQYNAPYAIPWRRRNELAIVVSE 368          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A7S0JKM7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JKM7_9EUKA)

HSP 1 Score: 102 bits (253), Expect = 1.170e-22
Identity = 70/157 (44.59%), Postives = 86/157 (54.78%), Query Frame = 1
Query:   16 ASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGR-YRVMQYNPPYTLPFRRRNEVAI 483
            A  + F  LA ++FG N++ ES+ MTTPV  D +                            SMSFVLP   +AA APAP +  AV L  V +G+  AVAEFTGF T GEV RQ E L A LRRD     + G  Y V QYNPPYT+P+ RRNE+A+
Sbjct:  222 AGSRSFRALAAFVFGSNAQSESIGMTTPVRTDVDQ------------------------LSSSMSFVLPSKYSAATAPAP-SDPAVRLQQV-EGQTLAVAEFTGFATGGEVERQREQLLAKLRRDGVDIPDGGSSYTVFQYNPPYTIPWLRRNELAM 352          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: K8Z7F5_NANGC (Soul heme-binding protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8Z7F5_NANGC)

HSP 1 Score: 94.7 bits (234), Expect = 7.610e-20
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    1 MDDPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRL 489
            +  P+ +G  FNTLAGY+FG N    +MAMTTPV I  ++                     G     SM F++        AP P+  + V L   A+ ER A  EF GF T+GEV+RQ+ +L + L RD     +   YR+ QYNPPYTLP+ RRNE+ + +
Sbjct:  213 LGSPTMTGGAFNTLAGYIFGANEAKTNMAMTTPVEIRKDAQHR------------------GAGEAYSMRFIMASPYTTETAPRPM-DSKVRLTTTAR-ERLAAREFAGFATEGEVQRQLISLLSLLDRDGVTVVDPASYRIFQYNPPYTLPWLRRNEILVEV 355          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: R1DS74_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DS74_EMIHU)

HSP 1 Score: 94.0 bits (232), Expect = 1.150e-19
Identity = 77/169 (45.56%), Postives = 90/169 (53.25%), Query Frame = 1
Query:   22 GQGFNTLAGYLFGRNSRDE--SMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRD-----ARGADESGRYR----VMQYNPPYTLPFRRRNEVAIRLVE 495
            G GFN LA YLFG N+  +  +MAMTTPV ID                   V GGG  S   SMSFVLP   AA A P P A   V+L +V      AV  F G VTDGEVRRQ +AL AA+  D     AR       +R    V+QYN PY +P+RRRNE+AI + E
Sbjct:  177 GAGFNALASYLFGDNAGADGAAMAMTTPVGID-------------------VSGGGAAS---SMSFVLPRD-AARAPPRPNADGGVALDEV-PARIVAVKAFAGVVTDGEVRRQRDALEAAIEADGGTAPARRPSRREPFRCCSLVLQYNAPYAIPWRRRNELAIVVSE 321          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A4D9DAF2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DAF2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.760e-19
Identity = 62/163 (38.04%), Postives = 85/163 (52.15%), Query Frame = 1
Query:    1 MDDPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRL 489
            +  P+ +G  FNTLAGY+FG N    +MAMTTPV I  ++                     G     SM F++        AP P+  + V L   A+ ER A  EF GF T+GEV+RQ+ +L + L RD     +   YR+ QYNPPYTLP+ RRNE+ + +
Sbjct:  744 LGSPTMTGGAFNTLAGYIFGANEAKTNMAMTTPVEIRKDAQHR------------------GAGEAYSMRFIMASPYTTETAPRPM-DSKVRLTTTAR-ERLAAREFAGFATEGEVQRQLISLLSLLDRDGVTVVDPASYRIFQYNPPYTLPWLRRNEILVEV 886          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A7S3AJD4_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AJD4_9EUKA)

HSP 1 Score: 91.7 bits (226), Expect = 2.740e-19
Identity = 63/162 (38.89%), Postives = 85/162 (52.47%), Query Frame = 1
Query:    7 DPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRLV 492
            D  A+ +GFN+LA + FG N+  E M MT P+ +D          S TGA                M+  LP   +AA +PA   G       +A  E  AV EFTGF T GE++RQ+ +L   L+RDA    +   Y V+QYNPPYTLP+ RRNE+A+ + 
Sbjct:   42 DAIATARGFNSLATFFFGANADTEVMDMTAPLRVDV---------SPTGAE---------------MALPLPAKYSAATSPAAQDGKVTLRQTMA--ETIAVREFTGFATGGEIKRQLSSLLDQLQRDAVSIRDGDTYAVLQYNPPYTLPWLRRNEIAVPIA 177          
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Match: A0A6T7QSS0_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A6T7QSS0_9CRYP)

HSP 1 Score: 93.2 bits (230), Expect = 3.090e-19
Identity = 67/158 (42.41%), Postives = 85/158 (53.80%), Query Frame = 1
Query:   22 GQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSATGASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGERWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYTLPFRRRNEVAIRLVE 495
            G  FN LA +LFG+N R E+M+MTTPV                     +VDG G     RSMSFV+P      + P PV  +AV +  + +  R A  EF GF T  EV RQ +AL AAL  D     E+    V+QYNPPYTLP  RRNEV +R+++
Sbjct:  211 GNAFNELASFLFGKNDRKEAMSMTTPVIT-------------------AVDGEG---RTRSMSFVIPSKYDLDSVPKPVGLSAVRMQQM-EDSRVAAREFPGFATPAEVVRQRDALLAALEEDGVTV-EADEVFVLQYNPPYTLPTFRRNEVFVRVLK 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5916.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVR9_ECTSI1.020e-2644.85Heme-binding family protein n=1 Tax=Ectocarpus sil... [more]
A0A6V1RB38_HETAK7.400e-2543.11Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2G1D3_9STRA1.400e-2443.56Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
R1FP20_EMIHU3.860e-2448.43Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A7S0JKM7_9EUKA1.170e-2244.59Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
K8Z7F5_NANGC7.610e-2038.04Soul heme-binding protein n=2 Tax=Nannochloropsis ... [more]
R1DS74_EMIHU1.150e-1945.56Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
A0A4D9DAF2_9STRA1.760e-1938.04Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3AJD4_9EUKA2.740e-1938.89Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A6T7QSS0_9CRYP3.090e-1942.41Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5916contigP-wetherbeei_contig5916:119..622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FVR9
PFAMsSOUL
Model size504
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.68e-27
EggNOG OGs2CMD4@1|root,2QQ0B@2759|Eukaryota
DescriptionHeme-binding-like protein At3g10130
Cds size504
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.6785426-CDS-P-wetherbeei_contig5916:118..6221683186874.6785426-CDS-P-wetherbeei_contig5916:118..622Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5916 119..622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5916.1.1prot_P-wetherbeei_contig5916.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5916 119..622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5916.1.1

>prot_P-wetherbeei_contig5916.1.1 ID=prot_P-wetherbeei_contig5916.1.1|Name=mRNA_P-wetherbeei_contig5916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=168bp
MDDPSASGQGFNTLAGYLFGRNSRDESMAMTTPVAIDCESPAYLGGSSAT
GASSFSVDGGGGKSTRRSMSFVLPEGMAAAAAPAPVAGAAVSLGDVAQGE
RWAVAEFTGFVTDGEVRRQVEALRAALRRDARGADESGRYRVMQYNPPYT
LPFRRRNEVAIRLVEPQ*
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mRNA from alignment at P-wetherbeei_contig5916:119..622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5916.1.1 ID=mRNA_P-wetherbeei_contig5916.1.1|Name=mRNA_P-wetherbeei_contig5916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig5916:119..622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACCCGTCGGCCTCCGGCCAGGGCTTCAACACCCTCGCCGGCTA CCTGTTTGGCCGCAACAGCCGCGACGAGAGCATGGCTATGACTACCCCCG TCGCTATCGACTGCGAAAGCCCCGCCTACCTTGGCGGTTCTTCTGCCACC GGCGCTTCTTCTTTTTCTGTCGACGGCGGCGGCGGCAAGTCCACGCGCCG CTCGATGTCGTTCGTGCTGCCGGAGGGGATGGCGGCCGCGGCGGCGCCGG CGCCGGTCGCGGGCGCGGCGGTCTCGCTCGGGGATGTGGCGCAGGGGGAG CGCTGGGCGGTGGCGGAGTTCACGGGCTTCGTGACAGACGGGGAGGTGCG GCGGCAGGTGGAGGCGCTGCGGGCGGCGCTGCGGCGGGACGCGCGCGGCG CGGACGAGAGCGGCCGGTACCGGGTGATGCAATACAACCCGCCGTACACG CTGCCGTTTCGGCGGCGCAACGAGGTTGCCATCCGGCTGGTGGAACCGCA GTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5916:119..622+

>mRNA_P-wetherbeei_contig5916.1.1 ID=mRNA_P-wetherbeei_contig5916.1.1|Name=mRNA_P-wetherbeei_contig5916.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=504bp|location=Sequence derived from alignment at P-wetherbeei_contig5916:119..622+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGACGACCCGTCGGCCTCCGGCCAGGGCTTCAACACCCTCGCCGGCTA
CCTGTTTGGCCGCAACAGCCGCGACGAGAGCATGGCTATGACTACCCCCG
TCGCTATCGACTGCGAAAGCCCCGCCTACCTTGGCGGTTCTTCTGCCACC
GGCGCTTCTTCTTTTTCTGTCGACGGCGGCGGCGGCAAGTCCACGCGCCG
CTCGATGTCGTTCGTGCTGCCGGAGGGGATGGCGGCCGCGGCGGCGCCGG
CGCCGGTCGCGGGCGCGGCGGTCTCGCTCGGGGATGTGGCGCAGGGGGAG
CGCTGGGCGGTGGCGGAGTTCACGGGCTTCGTGACAGACGGGGAGGTGCG
GCGGCAGGTGGAGGCGCTGCGGGCGGCGCTGCGGCGGGACGCGCGCGGCG
CGGACGAGAGCGGCCGGTACCGGGTGATGCAATACAACCCGCCGTACACG
CTGCCGTTTCGGCGGCGCAACGAGGTTGCCATCCGGCTGGTGGAACCGCA
GTGA
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