mRNA_P-wetherbeei_contig59150.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59150.1.1
Unique NamemRNA_P-wetherbeei_contig59150.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A6N7GWN7_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6N7GWN7_9HYPH)

HSP 1 Score: 226 bits (577), Expect = 2.370e-73
Identity = 108/153 (70.59%), Postives = 127/153 (83.01%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLDPSDTF+F+ AAEPGEWAVSG+F+FW+ DPA + GK R AFR GFLGVQSLGWSTLVQIV+ASDDDR AA+D LA+ LV  FGAP + +A +AAEEEF FA+SLC HP D L+AVHRT ENGEIRE FR+LR +    P+RAF+
Sbjct:    1 MKLLRTIRLDPSDTFVFERAAEPGEWAVSGAFMFWDGDPAAMAGKERTAFRSGFLGVQSLGWSTLVQIVDASDDDRRAAVDALAKHLVADFGAPGVAEATSAAEEEFAFAASLCDHPLDMLVAVHRTVENGEIREVFRTLRPRGERTPIRAFS 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A1W6ZYK8_9HYPH (Uncharacterized protein n=1 Tax=Pseudorhodoplanes sinuspersici TaxID=1235591 RepID=A0A1W6ZYK8_9HYPH)

HSP 1 Score: 221 bits (563), Expect = 3.310e-71
Identity = 106/153 (69.28%), Postives = 130/153 (84.97%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLDPSDTF+F+ AAEPGEWAV+G FVF + DPA+L+GK R AFR GFLGV SLGWSTLVQIV+AS +DR   ++ LA++L+  FGAP +E A AAAEEE +F+ +LCTHP+DTLIAVHR+ ENGE+REAFRSL+ + GPKPLRAF+
Sbjct:    1 MKLLRTIRLDPSDTFVFERAAEPGEWAVAGGFVFSDTDPASLQGKARTAFRAGFLGVDSLGWSTLVQIVDASTEDRANLVNALAQRLMRNFGAPDLETARAAAEEEVSFSEALCTHPSDTLIAVHRSFENGELREAFRSLQHRGGPKPLRAFS 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A537PLZ9_9PROT (Uncharacterized protein n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537PLZ9_9PROT)

HSP 1 Score: 213 bits (542), Expect = 5.720e-68
Identity = 105/153 (68.63%), Postives = 124/153 (81.05%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLDPSDTF+F+ AAEPGEWAV G+FVF + +PATLEGK R AFR GFLG+ SLGWSTLVQ+VEA +++R AAI+TLA +LVE FGAP +E A  AA EE  FA+SL  HP DTLIA+HR   +GEIRE FR+LR + G KPLRAFA
Sbjct:    1 MKLLRTIRLDPSDTFVFERAAEPGEWAVPGAFVFLDAEPATLEGKARTAFRSGFLGISSLGWSTLVQVVEADEENRSAAIETLAARLVEHFGAPDLETARGAAAEEVAFAASLAEHPPDTLIAMHRVQRDGEIRETFRTLRPRAGAKPLRAFA 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A6L5FGH8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A6L5FGH8_9HYPH)

HSP 1 Score: 210 bits (534), Expect = 8.260e-67
Identity = 107/153 (69.93%), Postives = 123/153 (80.39%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLDPSDTF+FD AA PGEWAVSG+F+F + D A L+GKPR AFRGG LGVQSLGWSTL Q+VEAS+ DR AAI  LA+Q V +FGAP +  A AAAEEE  FA+SLC HP DTLIAVHR+ E+G IREAFRSL  +   KP+RAFA
Sbjct:    1 MKLLRTIRLDPSDTFVFDRAAVPGEWAVSGAFMFGDTDAALLQGKPRTAFRGGLLGVQSLGWSTLAQVVEASEADRDAAIAMLAQQFVAQFGAPDLATARAAAEEEVAFAASLCDHPHDTLIAVHRSVEDGAIREAFRSLHPRGERKPMRAFA 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A537SYA6_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537SYA6_9PROT)

HSP 1 Score: 209 bits (533), Expect = 1.210e-66
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLDPSDTF+F+ AA+PGEWAVSG+F+F + DP  LEGK RAAFRGGFLGV SLGWSTL QIVEAS+ DR A ++TL RQL E+  AP +  A AAA+EE  FA+SLC HP DTLIAVHRT E+G IREAFRSL  +   KP+RAF+
Sbjct:    1 MKLLRTIRLDPSDTFVFERAADPGEWAVSGAFMFAHADPDALEGKSRAAFRGGFLGVNSLGWSTLAQIVEASEADRDALVETLGRQLYERLSAPDLAAARAAAQEEVAFAASLCDHPGDTLIAVHRTFEDGAIREAFRSLHPRGTRKPMRAFS 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A537VKG3_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537VKG3_9PROT)

HSP 1 Score: 207 bits (527), Expect = 1.420e-65
Identity = 107/164 (65.24%), Postives = 128/164 (78.05%), Query Frame = 1
Query:    1 LARSEDR-GAKVKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            + RS DR  A+V+LLRTIRLDPSDTF+F+ AA+PGEWAVSG+F+F + D   L GK RAAFRGGFLGV S GWSTLVQIV A+++DR A +DTLA+QL E+ GAP    A AAAEEE  FA+SLC HP DTLIAV RT E+G IREAFR+L  +   KP+RAF+
Sbjct:    1 MVRSHDRRAAEVRLLRTIRLDPSDTFVFERAADPGEWAVSGAFMFADADADALAGKSRAAFRGGFLGVASFGWSTLVQIVAATEEDRHALVDTLAKQLRERLGAPDFGAARAAAEEEVAFAASLCDHPHDTLIAVRRTFEDGAIREAFRTLHPRGTRKPMRAFS 164          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A371B3H0_9HYPH (Uncharacterized protein n=1 Tax=Pseudolabrys sp. GY_H TaxID=2292256 RepID=A0A371B3H0_9HYPH)

HSP 1 Score: 206 bits (524), Expect = 2.920e-65
Identity = 99/153 (64.71%), Postives = 119/153 (77.78%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTIRLD SDTF+F+ AAEPGEWAVSG+FVFW  DP+TL+GK R+AFR GFLGV++LGWSTLVQIVE SDDDR   +  LA +LV  FGAP ++ A AAA EE  FA SLC  P D L+ VHR+ E+G +RE FR+LR ++G KP R FA
Sbjct:    1 MKLLRTIRLDTSDTFVFEKAAEPGEWAVSGAFVFWTVDPSTLQGKARSAFRSGFLGVETLGWSTLVQIVEVSDDDRARVVHLLAEKLVAHFGAPDMDAARAAAAEEVAFAESLCNQPKDILVGVHRSFEDGAVRETFRTLRPREGAKPNRVFA 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: UPI00041543A0 (DUF6505 family protein n=1 Tax=Bradyrhizobium japonicum TaxID=375 RepID=UPI00041543A0)

HSP 1 Score: 206 bits (523), Expect = 4.020e-65
Identity = 104/153 (67.97%), Postives = 122/153 (79.74%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTI LDPSDTFIFD AAEPGEWAVSG+F FW+ D + LEGKPRAAFRGGFLGVQS GWSTL QIV A+ DD  + ID LARQLV++FGAP I  A AAAEEE  FA SLC+HP  +LIAVHRT  +GE+RE+FR L+ ++G    +AF+
Sbjct:    1 MKLLRTIALDPSDTFIFDVAAEPGEWAVSGAFRFWDCDGSKLEGKPRAAFRGGFLGVQSWGWSTLAQIVPATADDCHSLIDLLARQLVDRFGAPDIAVARAAAEEEVAFAQSLCSHPISSLIAVHRTSSDGEVRESFRRLQLREGQGHSKAFS 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A1G8EIW2_9BRAD (Uncharacterized protein n=9 Tax=Bradyrhizobium TaxID=374 RepID=A0A1G8EIW2_9BRAD)

HSP 1 Score: 204 bits (520), Expect = 1.150e-64
Identity = 101/153 (66.01%), Postives = 120/153 (78.43%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLLRTI LDPSDTF+FD AAEPGEWAVSG+F FW+ D A LEGK RAAFRGGFLGVQS GWSTLVQIV A++DD    ID LARQLV++FGAP +  A+ AAEEE  F+ SLCTHP  +LIAVHR    GE+RE+FR L+ ++G    +AF+
Sbjct:    1 MKLLRTIALDPSDTFVFDVAAEPGEWAVSGAFRFWDCDSAKLEGKARAAFRGGFLGVQSWGWSTLVQIVPATEDDYRRLIDLLARQLVDRFGAPDMATAMTAAEEEVAFSQSLCTHPVSSLIAVHRASSGGEVRESFRRLKLREGQGHGKAFS 153          
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Match: A0A380W545_AFIFE (Uncharacterized protein n=1 Tax=Afipia felis TaxID=1035 RepID=A0A380W545_AFIFE)

HSP 1 Score: 204 bits (519), Expect = 1.530e-64
Identity = 98/153 (64.05%), Postives = 122/153 (79.74%), Query Frame = 1
Query:   31 VKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPATLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEKFGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSLRAKDGPKPLRAFA 489
            +KLL+T+ LDPSDTF+FD AAEPGEWAVSG+F FW DDP TL+GK R+AFRGGFLG+QS GWSTLV+IVE +D+DR A ++ LA+QL+++ GAP +  A  AAEEE +FA SLC   T  LIAVHRT E GEIRE+FR+LR++   +  RAFA
Sbjct:    1 MKLLKTVALDPSDTFVFDPAAEPGEWAVSGAFRFWGDDPDTLQGKARSAFRGGFLGLQSWGWSTLVEIVEVTDNDRAAVVEMLAQQLIDRLGAPDLATARQAAEEEVSFAESLCNEATGILIAVHRTAEGGEIRESFRALRSRGKSRHQRAFA 153          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59150.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7GWN7_9HYPH2.370e-7370.59Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A1W6ZYK8_9HYPH3.310e-7169.28Uncharacterized protein n=1 Tax=Pseudorhodoplanes ... [more]
A0A537PLZ9_9PROT5.720e-6868.63Uncharacterized protein n=2 Tax=Alphaproteobacteri... [more]
A0A6L5FGH8_9HYPH8.260e-6769.93Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A537SYA6_9PROT1.210e-6668.63Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A537VKG3_9PROT1.420e-6565.24Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A371B3H0_9HYPH2.920e-6564.71Uncharacterized protein n=1 Tax=Pseudolabrys sp. G... [more]
UPI00041543A04.020e-6567.97DUF6505 family protein n=1 Tax=Bradyrhizobium japo... [more]
A0A1G8EIW2_9BRAD1.150e-6466.01Uncharacterized protein n=9 Tax=Bradyrhizobium Tax... [more]
A0A380W545_AFIFE1.530e-6464.05Uncharacterized protein n=1 Tax=Afipia felis TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59150contigP-wetherbeei_contig59150:2..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1304877.KI519399_gene4415
Model size489
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.59e-66
EggNOG OGs28NIR@1|root,2ZBK2@2|Bacteria,1RAAF@1224|Proteobacteria,2U5XR@28211|Alphaproteobacteria,3JT0S@41294|Bradyrhizobiaceae
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.60618-CDS-P-wetherbeei_contig59150:1..4901683186874.60618-CDS-P-wetherbeei_contig59150:1..490Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59150 2..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59150.1.1prot_P-wetherbeei_contig59150.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59150 2..490 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59150.1.1

>prot_P-wetherbeei_contig59150.1.1 ID=prot_P-wetherbeei_contig59150.1.1|Name=mRNA_P-wetherbeei_contig59150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=163bp
LARSEDRGAKVKLLRTIRLDPSDTFIFDSAAEPGEWAVSGSFVFWNDDPA
TLEGKPRAAFRGGFLGVQSLGWSTLVQIVEASDDDRLAAIDTLARQLVEK
FGAPSIEDAVAAAEEEFTFASSLCTHPTDTLIAVHRTHENGEIREAFRSL
RAKDGPKPLRAFA
back to top

mRNA from alignment at P-wetherbeei_contig59150:2..490-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59150.1.1 ID=mRNA_P-wetherbeei_contig59150.1.1|Name=mRNA_P-wetherbeei_contig59150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig59150:2..490- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTCGATCCGAAGACCGGGGGGCCAAGGTGAAGCTGCTGCGCACCAT CCGGCTCGATCCCTCCGACACATTCATTTTCGACAGCGCGGCGGAGCCGG GCGAGTGGGCAGTGTCGGGATCGTTCGTGTTCTGGAACGACGATCCGGCA ACACTCGAAGGCAAGCCGCGCGCGGCGTTCCGCGGCGGCTTCCTCGGCGT GCAGTCGCTCGGCTGGTCGACGCTGGTGCAGATCGTCGAGGCGAGCGACG ACGACCGGCTCGCGGCGATCGACACGCTGGCGAGGCAACTGGTCGAAAAA TTCGGCGCGCCGAGCATCGAGGATGCGGTGGCCGCGGCCGAGGAGGAGTT CACCTTCGCGTCGTCGCTTTGCACGCATCCCACCGACACGCTGATCGCCG TGCATCGCACGCACGAGAATGGCGAAATCCGCGAGGCATTCCGCTCGCTG CGCGCGAAGGACGGGCCGAAACCGCTGCGCGCATTTGCG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig59150:2..490-

>mRNA_P-wetherbeei_contig59150.1.1 ID=mRNA_P-wetherbeei_contig59150.1.1|Name=mRNA_P-wetherbeei_contig59150.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=489bp|location=Sequence derived from alignment at P-wetherbeei_contig59150:2..490- (Phaeothamnion wetherbeei SAG_119_79)
CTGGCTCGATCCGAAGACCGGGGGGCCAAGGTGAAGCTGCTGCGCACCAT
CCGGCTCGATCCCTCCGACACATTCATTTTCGACAGCGCGGCGGAGCCGG
GCGAGTGGGCAGTGTCGGGATCGTTCGTGTTCTGGAACGACGATCCGGCA
ACACTCGAAGGCAAGCCGCGCGCGGCGTTCCGCGGCGGCTTCCTCGGCGT
GCAGTCGCTCGGCTGGTCGACGCTGGTGCAGATCGTCGAGGCGAGCGACG
ACGACCGGCTCGCGGCGATCGACACGCTGGCGAGGCAACTGGTCGAAAAA
TTCGGCGCGCCGAGCATCGAGGATGCGGTGGCCGCGGCCGAGGAGGAGTT
CACCTTCGCGTCGTCGCTTTGCACGCATCCCACCGACACGCTGATCGCCG
TGCATCGCACGCACGAGAATGGCGAAATCCGCGAGGCATTCCGCTCGCTG
CGCGCGAAGGACGGGCCGAAACCGCTGCGCGCATTTGCG
back to top