mRNA_P-wetherbeei_contig5914.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5914.1.1
Unique NamemRNA_P-wetherbeei_contig5914.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5914.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5914contigP-wetherbeei_contig5914:535..3021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size420
Hectar predicted targeting categoryother localisation
Exons2
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.3840406-CDS-P-wetherbeei_contig5914:534..6781683186874.3840406-CDS-P-wetherbeei_contig5914:534..678Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5914 535..678 -
1683186874.3953161-CDS-P-wetherbeei_contig5914:2745..30031683186874.3953161-CDS-P-wetherbeei_contig5914:2745..3003Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5914 2746..3003 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.4050922-UTR-P-wetherbeei_contig5914:3003..30211683186874.4050922-UTR-P-wetherbeei_contig5914:3003..3021Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig5914 3004..3021 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5914.1.1prot_P-wetherbeei_contig5914.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5914 535..3003 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5914.1.1

>prot_P-wetherbeei_contig5914.1.1 ID=prot_P-wetherbeei_contig5914.1.1|Name=mRNA_P-wetherbeei_contig5914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=134bp
MQEAASSAAAAQAQAQAAEVAAKAEAEAAAAAAAAVAAAKAAAKAAGGDA
MEAEEEEGGGEAESGGDDGQGDEGGKGKGHFGEGGDRAASAASAAAVVPA
AAAAAPFLGAVEAAAAAADAIAAEAAEAAADSSR
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mRNA from alignment at P-wetherbeei_contig5914:535..3021-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5914.1.1 ID=mRNA_P-wetherbeei_contig5914.1.1|Name=mRNA_P-wetherbeei_contig5914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2487bp|location=Sequence derived from alignment at P-wetherbeei_contig5914:535..3021- (Phaeothamnion wetherbeei SAG_119_79)
CAGATCTCGGCGCTGCGGATGCAGGAGGCAGCGTCGTCGGCGGCCGCGGC
GCAGGCGCAGGCGCAGGCGGCCGAGGTGGCGGCCAAGGCAGAGGCGGAGG
CGGCTGCGGCGGCGGCGGCGGCGGTGGCGGCGGCCAAGGCAGCGGCCAAG
GCGGCGGGTGGCGACGCCATGGAGGCGGAGGAAGAGGAAGGCGGAGGCGA
AGCGGAAAGCGGCGGCGACGACGGCCAAGGCGACGAAGGTGGCAAAGGCA
AAGGCCACTTTGGCGAGGGCGGCGACGTCACGGAGGACGGCGGCGACGGC
ATAGGGGACGAGGGCGGCAAGTTGGACTACGGCAGTGGCAGCAGCAGGGA
TGAGGAGAGCCATCGTTGAGGCCGGGAAAAGGAGAGGATACTCAATGGCG
CGCTTTCTTTAAACGCCGCCGCTGCCGATGCTGTCGCTGCCATTGCCGAG
GTTGGCGCATCCGCCGTGATCGGCGACGTTTCCGCGTCGCGTGTGGCGCG
AGGAGCAGGGACGAGCAGGGCTGGAAGAACGGGCGGCCTTGGGGGTTGCG
AAGAGGCAAGACGGCGCGCGGCATCGAGACACTGCGCCTTCGCATGCGCC
GGGGAGGGCTTGCGGAAAGAGAGGTGCGGAAATGTTAGGAACAGGAAAGG
TGACCCATCAAAATAAATGGCATCACAATGTTACGCACAAGCAATTCTTA
AATGCTTCTTTCCGGTCATTCCTGGGGTTCCTTTTAGGCTGCGACACCTC
CGGCTCATGTACCCCATGCCACGCCGAATGGCAGAAAGAAATTACAAAGA
GGCTGAGTGGGAATCGGCGCTTGGATTATTTGAGGCTGTGTCGAAAAGCT
TCCAAGCCAGCAGCTGGAGCCACCCACTGCCTCTTGTGATATCCTCCAGC
GGGTCGGATGTGCCAATATGTTGCACATGCGGTCAGCGAGGCGTGCCAGC
TCTGCCTGTTCCTGCTGCAGGCTGTGCTGCGGTAGCTGCGTCGCCTTCGC
CGGCGCCATATTCCCGTCACTTCCCCCAATTCCACCTGGTGCTTGCCCTT
TCTTTGTGCCGTGTTCCTTTTGTGCAACCATGTGTAAGTAGGCGCAAGTT
CCCCCCCCGCCTCTTCTAATGTCTGAACTTGGATGCTCCCAGCCGGCGAT
TCCGTCATCTTGATGATGAATGACTTTGGTGATAACAGGTGGCGCGGACA
ATCGTCAGGCCTGCGGCACCATGTCGGTGCCATCTCGTTCGTCAGCGCTT
CACGCAGCAGCACGGCAGCCGGCTGCGCCGGGGTGGTCGTCGTCCGCTCC
TCTGTCAGCCGCGTTACGCAAGGCAACTGTACGGGGACAGCGGCCCGCCA
ATTTCCAGAGCCATCGGGCGGCTCTGAGATTTGCTGACACAATCGGGCCG
GGCCGTCCATACATTCGCAGCGTCGCCATATGTGCGGCAACCGTCCTGCC
TCGCGTTACAAGCGGCGACAGCGACAACGGCGCGTACCGGTACACCGCTG
CTGCCGCCGCCCCTGCCGCCGCCGCCGCTGCGCCGCTTGCCCCGCTCCCC
CTTTTTCCGTCTACCGATGCCGTGTCCCGGCGATAGCCATTCCTTTTCGT
ACAAAAACCAACACCTATCCAAATCCACACATGCACTGCACTTGTCACCC
GAACACCCAACCCGCCGGCCGCCGGTGGCGGCCGTTGAATCACGCCCGCA
ATGCGATGACACATCAAGCTTAAAAAGCGGTGTCACCCCCTTCCCACTGC
TGCAGACAACCTTTGGACTAAACTGCTCTACCAACCTGCTCTCACCAAGT
GCGACAGTTTTCAATCGGGCCAAACATGTCGCCACTCACGCGGATCACCG
AGCAGCCGAGGCACTGACCTCGGCGAGCGCCGCTTCGGTGCGGCGCCGCC
ACACCGCCTTCTTGCCACCGCCACCGCAACCGTCACCGTCAGTCGATGAT
CCAATGGCCTGCAGCAACGTCAGCGCCTGCTGGCACTTTTGTGCCGCCAC
GCCGCCGTCTCCGAGCAGCTCATCGGCCGCCGCCGCCCGCGCCAGCTCCA
GCGCGGCCCGGAAAATCACCTCGTCTGCGCCAGCGGCCAGCGGTGCCGCC
GAACCTGGCACCGGCGGCGGCGGCGTCACCACGGCGGCCGCCACCGGCGC
AACAGATGCTGCGGGCATCGGCGTCGGCGCCAACACCGAGGCTTGGATTG
ATGCCGGACCTCCATTTGCCACCGAGGCGGCGGCGGCCACAGCTACAGCT
GCAGCACGTCGCACCAGCGCGCGGCACTGCTCGCCTCGCTCCATTGTCTG
CGAGAAGAGGCGCTTCAGCCACTCTGCATGCCGGCATATGCAGCGCGCAG
CATCGGCGGCTTCGGCAGCAGCGGTGGTTCCCGCAGCGGCCGCAGCGGCG
CCGTTCCTTGGCGCGGTAGAGGCTGCAGCAGCGGCGGCAGACGCTATTGC
GGCGGAAGCAGCCGAGGCCGCGGCAGACAGCTCCCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5914:535..3021-

>mRNA_P-wetherbeei_contig5914.1.1 ID=mRNA_P-wetherbeei_contig5914.1.1|Name=mRNA_P-wetherbeei_contig5914.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=402bp|location=Sequence derived from alignment at P-wetherbeei_contig5914:535..3021- (Phaeothamnion wetherbeei SAG_119_79)
ATGCAGGAGGCAGCGTCGTCGGCGGCCGCGGCGCAGGCGCAGGCGCAGGC
GGCCGAGGTGGCGGCCAAGGCAGAGGCGGAGGCGGCTGCGGCGGCGGCGG
CGGCGGTGGCGGCGGCCAAGGCAGCGGCCAAGGCGGCGGGTGGCGACGCC
ATGGAGGCGGAGGAAGAGGAAGGCGGAGGCGAAGCGGAAAGCGGCGGCGA
CGACGGCCAAGGCGACGAAGGTGGCAAAGGCAAAGGCCACTTTGGCGAGG
GCGGCGACCGCGCAGCATCGGCGGCTTCGGCAGCAGCGGTGGTTCCCGCA
GCGGCCGCAGCGGCGCCGTTCCTTGGCGCGGTAGAGGCTGCAGCAGCGGC
GGCAGACGCTATTGCGGCGGAAGCAGCCGAGGCCGCGGCAGACAGCTCCC
GT
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