mRNA_P-wetherbeei_contig59132.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59132.1.1
Unique NamemRNA_P-wetherbeei_contig59132.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59132.1.1 vs. uniprot
Match: UPI001C3DB90A (flagellar FliJ family protein n=1 Tax=Miltoncostaea oceani TaxID=2843216 RepID=UPI001C3DB90A)

HSP 1 Score: 157 bits (398), Expect = 1.480e-46
Identity = 100/144 (69.44%), Postives = 110/144 (76.39%), Query Frame = 1 
Query:   46 VSPPFRFRLEQVLDHRSRREDLMRQELAQAMAAVAAQQERAVAAQGAVATALAALRSLMGAPIELDALRAGHHGLSLLRSRAAHERSTVEGLEVVADERRADLVRASQEREALVQLRRTALERHRVEAQRLEGLELDELAGRRA 477
            +S  FRFRLEQVL+HR RREDL RQELAQ+MAAVA QQ RAV A  AV  ALAALR  M  P +LDALRAGH  L+  R RAAHER  V+ LEVVADERRA LV ASQ+REA+ QLR  A ERHRVE  RLEG+ +DELA RRA
Sbjct:    1 MSTRFRFRLEQVLEHRVRREDLARQELAQSMAAVADQQMRAVRADDAVLAALAALRGRMRGPTDLDALRAGHEELAFARQRAAHERLVVQQLEVVADERRAALVSASQDREAIAQLRVRAQERHRVEELRLEGVAMDELAMRRA 144
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BLAST of mRNA_P-wetherbeei_contig59132.1.1 vs. uniprot
Match: UPI001C3E3506 (flagellar FliJ family protein n=1 Tax=Miltoncostaea marina TaxID=2843215 RepID=UPI001C3E3506)

HSP 1 Score: 152 bits (383), Expect = 2.720e-44
Identity = 95/144 (65.97%), Postives = 109/144 (75.69%), Query Frame = 1 
Query:   46 VSPPFRFRLEQVLDHRSRREDLMRQELAQAMAAVAAQQERAVAAQGAVATALAALRSLMGAPIELDALRAGHHGLSLLRSRAAHERSTVEGLEVVADERRADLVRASQEREALVQLRRTALERHRVEAQRLEGLELDELAGRRA 477
            +S  FRFRLEQVLDHR RREDL+RQELAQAMAAVAAQQERAVAA+ AV   L  LR +MG PI LD LRA H  L++LR+RAA  RS       VAD+RRAD+VRASQ+REALVQLRR A +RH  E  R + + +DELA RRA
Sbjct:    1 MSDRFRFRLEQVLDHRVRREDLVRQELAQAMAAVAAQQERAVAAEDAVRRGLDGLRRMMGEPIGLDRLRAAHEDLAILRARAAXXRSXXXXXXXVADDRRADMVRASQDREALVQLRRRAEQRHGAELARRDAVLMDELAARRA 144
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BLAST of mRNA_P-wetherbeei_contig59132.1.1 vs. uniprot
Match: G2H773_9DELT (Flagellar FliJ protein n=7 Tax=Desulfovibrionaceae TaxID=194924 RepID=G2H773_9DELT)

HSP 1 Score: 50.1 bits (118), Expect = 9.770e-5
Identity = 45/122 (36.89%), Postives = 64/122 (52.46%), Query Frame = 1 
Query:   52 PPFRFRLEQVLDHRSRREDLMRQELAQAMAAVAAQQERAVAAQGAVATALAALRSLMGAPIELDALRAGHHGLSLLRSRAAHERSTVEGLEVVADERRADLVRASQEREALVQLRRTALERH 417
            PPFRFRL+QVLD+R + E+  +   A+A AA  AQQ +  A + A+A A   L     A +  D L    + L  LR    H    +  L    ++ RA+LV+ SQER+ L +L+     RH
Sbjct:    2 PPFRFRLQQVLDYREQLEEQAKLAFARAKAAHEAQQRQVEAVRAAIAEAERKLYE--DARLSRDELWLQRNFLRGLREDLTHAELRLRMLAQQREQARAELVKKSQERKLLEKLKDKQAARH 121
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59132.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
UPI001C3DB90A1.480e-4669.44flagellar FliJ family protein n=1 Tax=Miltoncostae... [more]
UPI001C3E35062.720e-4465.97flagellar FliJ family protein n=1 Tax=Miltoncostae... [more]
G2H773_9DELT9.770e-536.89Flagellar FliJ protein n=7 Tax=Desulfovibrionaceae... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59132contigP-wetherbeei_contig59132:20..496 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog883.DvMF_1393
PFAMsFliJ
Model size477
Max annot lvl28221|Deltaproteobacteria
KEGG koko:K02413
KEGG Pathwayko02040,map02040
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.09e-05
EggNOG OGsCOG2882@1|root,COG2882@2|Bacteria,1NFJ1@1224|Proteobacteria,42V79@68525|delta/epsilon subdivisions,2WRP2@28221|Deltaproteobacteria,2MDCJ@213115|Desulfovibrionales
DescriptionTIGRFAM flagellar export protein FliJ
Cds size477
COG categoryN
BRITEko00000,ko00001,ko02035
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186874.2943707-CDS-P-wetherbeei_contig59132:19..4961683186874.2943707-CDS-P-wetherbeei_contig59132:19..496Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59132 20..496 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59132.1.1prot_P-wetherbeei_contig59132.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59132 20..496 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59132.1.1

>prot_P-wetherbeei_contig59132.1.1 ID=prot_P-wetherbeei_contig59132.1.1|Name=mRNA_P-wetherbeei_contig59132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=159bp
SGPGQASLWSADRPRVSPPFRFRLEQVLDHRSRREDLMRQELAQAMAAVA
AQQERAVAAQGAVATALAALRSLMGAPIELDALRAGHHGLSLLRSRAAHE
RSTVEGLEVVADERRADLVRASQEREALVQLRRTALERHRVEAQRLEGLE
LDELAGRRA
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mRNA from alignment at P-wetherbeei_contig59132:20..496+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59132.1.1 ID=mRNA_P-wetherbeei_contig59132.1.1|Name=mRNA_P-wetherbeei_contig59132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig59132:20..496+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGGCCGGGTCAAGCTTCCCTGTGGAGCGCCGATAGACCGAGGGTGAG
CCCTCCGTTCCGCTTTCGTCTCGAGCAGGTGCTCGATCACCGTTCGCGGC
GCGAGGACCTGATGCGCCAGGAACTGGCGCAGGCGATGGCCGCCGTGGCC
GCCCAGCAGGAGCGTGCGGTGGCGGCGCAGGGCGCGGTCGCGACCGCGCT
GGCGGCACTGCGCTCCCTGATGGGTGCCCCGATCGAGCTCGATGCGCTAC
GCGCCGGGCACCATGGGCTCTCCCTGCTGCGATCGCGGGCGGCCCACGAG
CGGTCGACCGTGGAGGGCCTGGAGGTCGTGGCCGACGAGCGGCGCGCCGA
TCTGGTGCGCGCCAGCCAGGAGCGCGAGGCGCTTGTGCAACTGCGCCGCA
CGGCCCTCGAGCGCCACCGCGTGGAGGCCCAGCGCCTCGAGGGGCTCGAG
CTGGACGAGCTCGCCGGCCGGAGAGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59132:20..496+

>mRNA_P-wetherbeei_contig59132.1.1 ID=mRNA_P-wetherbeei_contig59132.1.1|Name=mRNA_P-wetherbeei_contig59132.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=477bp|location=Sequence derived from alignment at P-wetherbeei_contig59132:20..496+ (Phaeothamnion wetherbeei SAG_119_79)
AGTGGGCCGGGTCAAGCTTCCCTGTGGAGCGCCGATAGACCGAGGGTGAG
CCCTCCGTTCCGCTTTCGTCTCGAGCAGGTGCTCGATCACCGTTCGCGGC
GCGAGGACCTGATGCGCCAGGAACTGGCGCAGGCGATGGCCGCCGTGGCC
GCCCAGCAGGAGCGTGCGGTGGCGGCGCAGGGCGCGGTCGCGACCGCGCT
GGCGGCACTGCGCTCCCTGATGGGTGCCCCGATCGAGCTCGATGCGCTAC
GCGCCGGGCACCATGGGCTCTCCCTGCTGCGATCGCGGGCGGCCCACGAG
CGGTCGACCGTGGAGGGCCTGGAGGTCGTGGCCGACGAGCGGCGCGCCGA
TCTGGTGCGCGCCAGCCAGGAGCGCGAGGCGCTTGTGCAACTGCGCCGCA
CGGCCCTCGAGCGCCACCGCGTGGAGGCCCAGCGCCTCGAGGGGCTCGAG
CTGGACGAGCTCGCCGGCCGGAGAGCA
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