mRNA_P-wetherbeei_contig59033.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59033.1.1
Unique NamemRNA_P-wetherbeei_contig59033.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A521MA07_9HYPH (PaaI family thioesterase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521MA07_9HYPH)

HSP 1 Score: 75.5 bits (184), Expect = 4.590e-16
Identity = 36/42 (85.71%), Postives = 38/42 (90.48%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS 126
            LIKAEG  L+RGRRVGTAEGRITD +GRLLAHGTTTCLIF S
Sbjct:  119 LIKAEGVVLNRGRRVGTAEGRITDDRGRLLAHGTTTCLIFES 160
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A525JA92_BRASZ (PaaI family thioesterase n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525JA92_BRASZ)

HSP 1 Score: 75.1 bits (183), Expect = 6.210e-16
Identity = 34/40 (85.00%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIF 120
            LIKAEG  L+RGRR+GTAEGR+TD KGRLLAHGTTTCLIF
Sbjct:  119 LIKAEGVVLNRGRRIGTAEGRVTDDKGRLLAHGTTTCLIF 158
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A1M5IMU3_9BRAD (Uncharacterized domain 1-containing protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5IMU3_9BRAD)

HSP 1 Score: 75.1 bits (183), Expect = 7.080e-16
Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS 126
            LIKAEG  L RGRR+GTAEGR+TDGKGRLLAHGTTTCLI  S
Sbjct:  123 LIKAEGIVLSRGRRIGTAEGRVTDGKGRLLAHGTTTCLILQS 164
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: UPI0013D3B677 (PaaI family thioesterase n=1 Tax=Acinetobacter baumannii TaxID=470 RepID=UPI0013D3B677)

HSP 1 Score: 72.4 bits (176), Expect = 7.290e-16
Identity = 32/39 (82.05%), Postives = 35/39 (89.74%), Query Frame = 1 
Query:    4 IKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIF 120
            I AEG  +HRGRRVGTAEGR+TDG+GRLLAHGTTTC IF
Sbjct:   26 ISAEGKVIHRGRRVGTAEGRLTDGEGRLLAHGTTTCFIF 64
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A537Q684_9PROT (PaaI family thioesterase n=2 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A537Q684_9PROT)

HSP 1 Score: 74.7 bits (182), Expect = 8.210e-16
Identity = 36/41 (87.80%), Postives = 37/41 (90.24%), Query Frame = 1 
Query:    4 IKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS 126
            IKAEG  L+RGRRVGTAEGRITD KGRLLAHGTTTCLIF S
Sbjct:  115 IKAEGIVLNRGRRVGTAEGRITDSKGRLLAHGTTTCLIFQS 155
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A1M5YGU0_9BRAD (Uncharacterized domain 1-containing protein n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5YGU0_9BRAD)

HSP 1 Score: 73.9 bits (180), Expect = 1.750e-15
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIF 120
            LI+AEG  L RGRR+GTAEGR+TDGKGRLLAHGTTTC+IF
Sbjct:  117 LIEAEGIVLSRGRRIGTAEGRLTDGKGRLLAHGTTTCMIF 156
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: UPI001BA655C6 (PaaI family thioesterase n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001BA655C6)

HSP 1 Score: 72.8 bits (177), Expect = 5.060e-15
Identity = 33/40 (82.50%), Postives = 37/40 (92.50%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIF 120
            L++AEG+ L+RGRRVGTAEGRITD  GRLLAHGTTTCLIF
Sbjct:  118 LVRAEGSVLNRGRRVGTAEGRITDADGRLLAHGTTTCLIF 157
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A522ZHF8_9HYPH (PaaI family thioesterase n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A522ZHF8_9HYPH)

HSP 1 Score: 72.8 bits (177), Expect = 5.170e-15
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIF 120
            LI+AEG  L+ GRRVGTAEGRITDG GRLLAHGTTTCLIF
Sbjct:  119 LIRAEGLVLNAGRRVGTAEGRITDGNGRLLAHGTTTCLIF 158
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: UPI0013DAD7A9 (PaaI family thioesterase n=1 Tax=Stenotrophomonas maltophilia TaxID=40324 RepID=UPI0013DAD7A9)

HSP 1 Score: 70.5 bits (171), Expect = 5.170e-15
Identity = 31/41 (75.61%), Postives = 36/41 (87.80%), Query Frame = 1 
Query:    4 IKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS 126
            IKAEGT ++RGRR+G A+GR+TD KGRLL HGTTTCLIF S
Sbjct:   34 IKAEGTVINRGRRIGIADGRVTDSKGRLLVHGTTTCLIFES 74
[Close]
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Match: A0A1M6TJ59_9BRAD (Uncharacterized domain 1-containing protein n=1 Tax=Bradyrhizobium lablabi TaxID=722472 RepID=A0A1M6TJ59_9BRAD)

HSP 1 Score: 72.4 bits (176), Expect = 6.990e-15
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 1 
Query:    1 LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS 126
            +I+AEG  L RGRRVGTAEGR+ DG+GRLLAHGTTTCLIF S
Sbjct:  117 MIRAEGVVLSRGRRVGTAEGRVIDGQGRLLAHGTTTCLIFQS 158
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59033.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521MA07_9HYPH4.590e-1685.71PaaI family thioesterase n=1 Tax=Reyranella sp. Ta... [more]
A0A525JA92_BRASZ6.210e-1685.00PaaI family thioesterase n=1 Tax=Bradyrhizobium sp... [more]
A0A1M5IMU3_9BRAD7.080e-1683.33Uncharacterized domain 1-containing protein n=1 Ta... [more]
UPI0013D3B6777.290e-1682.05PaaI family thioesterase n=1 Tax=Acinetobacter bau... [more]
A0A537Q684_9PROT8.210e-1687.80PaaI family thioesterase n=2 Tax=Alphaproteobacter... [more]
A0A1M5YGU0_9BRAD1.750e-1582.50Uncharacterized domain 1-containing protein n=1 Ta... [more]
UPI001BA655C65.060e-1582.50PaaI family thioesterase n=1 Tax=unclassified Brad... [more]
A0A522ZHF8_9HYPH5.170e-1585.00PaaI family thioesterase n=1 Tax=Reyranella sp. Ta... [more]
UPI0013DAD7A95.170e-1575.61PaaI family thioesterase n=1 Tax=Stenotrophomonas ... [more]
A0A1M6TJ59_9BRAD6.990e-1578.57Uncharacterized domain 1-containing protein n=1 Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59033contigP-wetherbeei_contig59033:2..130 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog398525.KB900701_gene2677
PFAMs4HBT
Model size129
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue8.71e-15
EggNOG OGsCOG2050@1|root,COG2050@2|Bacteria,1RK46@1224|Proteobacteria,2U9U1@28211|Alphaproteobacteria,3JYKR@41294|Bradyrhizobiaceae
DescriptionThioesterase superfamily
Cds size129
COG categoryQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186873.1493068-CDS-P-wetherbeei_contig59033:1..1301683186873.1493068-CDS-P-wetherbeei_contig59033:1..130Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59033 2..130 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59033.1.1prot_P-wetherbeei_contig59033.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59033 2..130 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59033.1.1

>prot_P-wetherbeei_contig59033.1.1 ID=prot_P-wetherbeei_contig59033.1.1|Name=mRNA_P-wetherbeei_contig59033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=43bp
LIKAEGTTLHRGRRVGTAEGRITDGKGRLLAHGTTTCLIFGS*
back to top

mRNA from alignment at P-wetherbeei_contig59033:2..130+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59033.1.1 ID=mRNA_P-wetherbeei_contig59033.1.1|Name=mRNA_P-wetherbeei_contig59033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig59033:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATCAAGGCGGAAGGCACAACTTTGCATCGAGGTCGCCGGGTCGGTAC
CGCGGAGGGACGGATCACAGACGGAAAGGGCCGATTGTTGGCGCACGGCA
CGACGACTTGCCTGATATTCGGGAGTTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig59033:2..130+

>mRNA_P-wetherbeei_contig59033.1.1 ID=mRNA_P-wetherbeei_contig59033.1.1|Name=mRNA_P-wetherbeei_contig59033.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=129bp|location=Sequence derived from alignment at P-wetherbeei_contig59033:2..130+ (Phaeothamnion wetherbeei SAG_119_79)
CTGATCAAGGCGGAAGGCACAACTTTGCATCGAGGTCGCCGGGTCGGTAC
CGCGGAGGGACGGATCACAGACGGAAAGGGCCGATTGTTGGCGCACGGCA
CGACGACTTGCCTGATATTCGGGAGTTGA
back to top