mRNA_P-wetherbeei_contig59011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59011.1.1
Unique NamemRNA_P-wetherbeei_contig59011.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: UPI001C21F17F (PadR family transcriptional regulator n=2 Tax=Reyranella TaxID=445219 RepID=UPI001C21F17F)

HSP 1 Score: 224 bits (570), Expect = 5.800e-72
Identity = 116/136 (85.29%), Postives = 126/136 (92.65%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQPR GY LIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKS+GARKAF VT +GT HL ER+AEV+ALFARLAELA++ +RTDA PVRRAM NLR VLIHRLGR+GVQKQTVH+AVAIIDEAAQRIERL
Sbjct:   62 IADQPRHGYELIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSDGARKAFTVTPDGTIHLLERKAEVDALFARLAELASLQERTDAAPVRRAMNNLREVLIHRLGREGVQKQTVHDAVAIIDEAAQRIERL 197          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A6N6ZYD3_9PROT (PadR domain-containing protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A6N6ZYD3_9PROT)

HSP 1 Score: 219 bits (558), Expect = 3.870e-70
Identity = 111/136 (81.62%), Postives = 124/136 (91.18%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +AD+PR GY LIRAIEELTGGSYVPSPGMVYPTLT+LDEMGH+AE KSEG+RKAFA+T +GT HL ER+ EV+ALFARLAELA V +RTD+ PVRRAMGNLR  LI+RLGRDGVQKQTVH+AVAIIDEAAQRIERL
Sbjct:   62 IADEPRHGYELIRAIEELTGGSYVPSPGMVYPTLTLLDEMGHIAETKSEGSRKAFAITPDGTVHLTERKGEVDALFARLAELANVQERTDSAPVRRAMGNLREALINRLGRDGVQKQTVHDAVAIIDEAAQRIERL 197          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A259MGP8_9PROT (PadR family transcriptional regulator n=1 Tax=Rhodospirillales bacterium 39-66-50 TaxID=1970570 RepID=A0A259MGP8_9PROT)

HSP 1 Score: 216 bits (550), Expect = 5.970e-69
Identity = 112/136 (82.35%), Postives = 123/136 (90.44%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +AD+PR GY LIRAIEELTGG YVPSPGM+YPTLTMLDEMGH+AEVKSEGARK+FAVT +GTAHL ER+ EV ALFARLAELA + +RTD+ PVRRAMGNLR  LI RLGRDGVQKQTVH+AVAIIDEAAQRIERL
Sbjct:   60 IADEPRHGYELIRAIEELTGGRYVPSPGMIYPTLTMLDEMGHIAEVKSEGARKSFAVTPDGTAHLDERKVEVAALFARLAELAGLQERTDSAPVRRAMGNLREALILRLGRDGVQKQTVHDAVAIIDEAAQRIERL 195          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A522ZIF9_9HYPH (PadR family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A522ZIF9_9HYPH)

HSP 1 Score: 209 bits (532), Expect = 3.360e-66
Identity = 107/136 (78.68%), Postives = 122/136 (89.71%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +AD+PR GY LIRAIEELTGG YVPSPGMVYPTLT+LDEMGH+AE KSE ARKAFAVT +GT HL ER+AEV+ALFARLAELA++ +RTD+ PVRRAMGNLR  LI+RL RDGVQKQTV++A AIIDEAAQ+IERL
Sbjct:   61 IADEPRHGYELIRAIEELTGGRYVPSPGMVYPTLTLLDEMGHIAETKSEKARKAFAVTPDGTTHLVERKAEVDALFARLAELASLQERTDSAPVRRAMGNLREALINRLSRDGVQKQTVYDAAAIIDEAAQKIERL 196          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A1Q3LN88_9PROT (PadR family transcriptional regulator n=1 Tax=Alphaproteobacteria bacterium 65-37 TaxID=1895711 RepID=A0A1Q3LN88_9PROT)

HSP 1 Score: 202 bits (513), Expect = 2.590e-63
Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQPR GY LIRAIE+LTGGSYVPSPGMVYPTLTML +MGH+ E KSEG+RKAFA T EG AHLA R+ EV+ALFARL ELA + +RTD  P+RRAM NLRAVLIHRLGR+GV+ +T+H+AVAIIDEAAQ+IERL
Sbjct:   61 IADQPRHGYELIRAIEDLTGGSYVPSPGMVYPTLTMLLDMGHITEAKSEGSRKAFAATDEGVAHLAARKEEVDALFARLVELADLRERTDNAPIRRAMANLRAVLIHRLGREGVETKTLHDAVAIIDEAAQKIERL 196          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A521QQZ7_9HYPH (PadR family transcriptional regulator n=1 Tax=Reyranella sp. TaxID=1929291 RepID=A0A521QQZ7_9HYPH)

HSP 1 Score: 201 bits (512), Expect = 3.230e-63
Identity = 104/136 (76.47%), Postives = 119/136 (87.50%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQPR GY LIRAIE+LTGGSYVPSPGMVYPTLTML EMGHVAE KSEG RKAFAVT +G + LA ++ EV+ALFARLAELA   +RTD+ P+RRAM NLRAVLIHRLGR+ +Q QT+HEAV+IIDEAAQ+IERL
Sbjct:   56 IADQPRHGYELIRAIEDLTGGSYVPSPGMVYPTLTMLLEMGHVAEAKSEGPRKAFAVTEDGISELAAKKTEVDALFARLAELANQQERTDSAPIRRAMSNLRAVLIHRLGREDIQMQTLHEAVSIIDEAAQKIERL 191          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: UPI0012FA475A (PadR family transcriptional regulator n=1 Tax=Sphingomonas formosensis TaxID=861534 RepID=UPI0012FA475A)

HSP 1 Score: 198 bits (503), Expect = 7.520e-62
Identity = 99/136 (72.79%), Postives = 116/136 (85.29%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQ R GY LIRAIEELTGGSYVPSPG+VYPTLT+L +MGH+ E K+EG RKAF++T EGTAHLAE+Q EVEALF+RLAELA + +RTD  P+RRAMGNLRAVL+HRLGR+ V  +T H   AI+DEAAQRIERL
Sbjct:   57 IADQSRHGYDLIRAIEELTGGSYVPSPGVVYPTLTLLQDMGHIEEAKTEGTRKAFSITEEGTAHLAEKQDEVEALFSRLAELAALRERTDGAPIRRAMGNLRAVLMHRLGREDVSSETQHAVAAILDEAAQRIERL 192          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A1H8X4L8_9PROT (DNA-binding transcriptional regulator, PadR family n=2 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8X4L8_9PROT)

HSP 1 Score: 187 bits (475), Expect = 4.940e-57
Identity = 93/136 (68.38%), Postives = 115/136 (84.56%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQPR GY LIRAIEELTGG+YVPSPG++YPTLT+L +MG + E  +EG RK FA+TA+GTA L  ++ EVEALFARLAELA++ +RTD  PVRRAMGNLR VL+ RLG+DGVQ +T+HE  AI+DEAA++IERL
Sbjct:   99 IADQPRHGYELIRAIEELTGGAYVPSPGVIYPTLTLLQDMGRIEEAAAEGPRKPFAITADGTAELLAKKPEVEALFARLAELASLRERTDGGPVRRAMGNLRTVLLDRLGKDGVQSETMHEVAAILDEAARKIERL 234          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: G8AT73_9PROT (PadR domain-containing protein n=37 Tax=Azospirillaceae TaxID=2829815 RepID=G8AT73_9PROT)

HSP 1 Score: 186 bits (471), Expect = 6.560e-57
Identity = 94/136 (69.12%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +AD+PR GY LIRA+EELTGG YVPSPG++YPTL++L+EMGH+A+  +EGARK FAVT EGTA LA+  A V+ALFARLA LAT    TD  P+RRAM NL+AVL+HRLGR+GV   TVH AV+I+DEAAQRIERL
Sbjct:   62 IADEPRHGYNLIRAVEELTGGGYVPSPGVIYPTLSLLEEMGHIAKADAEGARKPFAVTPEGTAQLAQDAATVDALFARLAALATRRAHTDGAPIRRAMENLKAVLMHRLGREGVDADTVHAAVSILDEAAQRIERL 197          
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Match: A0A6A7LXC3_9PROT (PadR family transcriptional regulator n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7LXC3_9PROT)

HSP 1 Score: 184 bits (466), Expect = 1.010e-55
Identity = 92/136 (67.65%), Postives = 113/136 (83.09%), Query Frame = 1
Query:    1 LADQPRPGYGLIRAIEELTGGSYVPSPGMVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFARLAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDEAAQRIERL 408
            +ADQPR GY LIRAIEELTGG+YVPSPG++YPTLT+L +MG + E  + G RK FAVTA+GTA L  ++ EVE LFARLA+LA++ +RTD  PVRRAMGNLR VL+ RLGRDGVQ +T+HE  AI+DEAA++IERL
Sbjct:   95 IADQPRHGYELIRAIEELTGGAYVPSPGVIYPTLTLLQDMGRIEEATAAGPRKPFAVTADGTAELVAKKQEVETLFARLAQLASMRERTDGGPVRRAMGNLRTVLLDRLGRDGVQTETMHEVAAILDEAARKIERL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001C21F17F5.800e-7285.29PadR family transcriptional regulator n=2 Tax=Reyr... [more]
A0A6N6ZYD3_9PROT3.870e-7081.62PadR domain-containing protein n=1 Tax=Rhodospiril... [more]
A0A259MGP8_9PROT5.970e-6982.35PadR family transcriptional regulator n=1 Tax=Rhod... [more]
A0A522ZIF9_9HYPH3.360e-6678.68PadR family transcriptional regulator n=1 Tax=Reyr... [more]
A0A1Q3LN88_9PROT2.590e-6375.74PadR family transcriptional regulator n=1 Tax=Alph... [more]
A0A521QQZ7_9HYPH3.230e-6376.47PadR family transcriptional regulator n=1 Tax=Reyr... [more]
UPI0012FA475A7.520e-6272.79PadR family transcriptional regulator n=1 Tax=Sphi... [more]
A0A1H8X4L8_9PROT4.940e-5768.38DNA-binding transcriptional regulator, PadR family... [more]
G8AT73_9PROT6.560e-5769.12PadR domain-containing protein n=37 Tax=Azospirill... [more]
A0A6A7LXC3_9PROT1.010e-5567.65PadR family transcriptional regulator n=1 Tax=Rhod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59011contigP-wetherbeei_contig59011:3..502 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1030157.AFMP01000044_gene1897
PFAMsPadR
Model size500
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.79e-39
EggNOG OGsCOG1695@1|root,COG1695@2|Bacteria,1RHSE@1224|Proteobacteria,2U1HF@28211|Alphaproteobacteria,2K4SR@204457|Sphingomonadales
Descriptiontranscriptional
Cds size327
COG categoryK
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.88997-UTR-P-wetherbeei_contig59011:2..861683186872.88997-UTR-P-wetherbeei_contig59011:2..86Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59011 3..86 +
1683186872.9137626-UTR-P-wetherbeei_contig59011:413..5021683186872.9137626-UTR-P-wetherbeei_contig59011:413..502Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig59011 414..502 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.899574-CDS-P-wetherbeei_contig59011:86..4131683186872.899574-CDS-P-wetherbeei_contig59011:86..413Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59011 87..413 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59011.1.1prot_P-wetherbeei_contig59011.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59011 87..413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59011.1.1

>prot_P-wetherbeei_contig59011.1.1 ID=prot_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MVYPTLTMLDEMGHVAEVKSEGARKAFAVTAEGTAHLAERQAEVEALFAR
LAELATVSDRTDAMPVRRAMGNLRAVLIHRLGRDGVQKQTVHEAVAIIDE
AAQRIERL*
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mRNA from alignment at P-wetherbeei_contig59011:3..502+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59011.1.1 ID=mRNA_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=500bp|location=Sequence derived from alignment at P-wetherbeei_contig59011:3..502+ (Phaeothamnion wetherbeei SAG_119_79)
CTCGCCGACCAGCCGCGCCCCGGCTACGGGTTGATCCGCGCCATCGAGGA GCTGACGGGCGGCAGCTACGTGCCGAGCCCCGGCATGGTCTATCCGACGC TGACGATGCTCGACGAGATGGGCCACGTCGCCGAGGTGAAGTCGGAGGGC GCGCGCAAGGCGTTCGCCGTCACCGCGGAGGGCACCGCCCACCTCGCCGA GCGCCAGGCGGAGGTCGAGGCGCTGTTCGCGCGGCTGGCCGAACTCGCCA CTGTGAGCGACCGTACCGACGCGATGCCGGTCCGCCGCGCCATGGGCAAT CTGCGCGCGGTGCTGATCCATCGCCTGGGTCGGGACGGCGTGCAGAAGCA GACCGTCCACGAGGCGGTCGCCATCATCGACGAGGCCGCGCAGCGGATCG AACGCCTATGAGCGTCGCGAGCACCGCGCGCGTGCCGACCACCAGCGGCA GCCGCTACCTCCAGCAGCTCTGCAAGCACTGGAGCCACAACCTGGCCGTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59011:3..502+

>mRNA_P-wetherbeei_contig59011.1.1 ID=mRNA_P-wetherbeei_contig59011.1.1|Name=mRNA_P-wetherbeei_contig59011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig59011:3..502+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGTCTATCCGACGCTGACGATGCTCGACGAGATGGGCCACGTCGCCGA
GGTGAAGTCGGAGGGCGCGCGCAAGGCGTTCGCCGTCACCGCGGAGGGCA
CCGCCCACCTCGCCGAGCGCCAGGCGGAGGTCGAGGCGCTGTTCGCGCGG
CTGGCCGAACTCGCCACTGTGAGCGACCGTACCGACGCGATGCCGGTCCG
CCGCGCCATGGGCAATCTGCGCGCGGTGCTGATCCATCGCCTGGGTCGGG
ACGGCGTGCAGAAGCAGACCGTCCACGAGGCGGTCGCCATCATCGACGAG
GCCGCGCAGCGGATCGAACGCCTATGA
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