mRNA_P-wetherbeei_contig5901.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig5901.1.1
Unique NamemRNA_P-wetherbeei_contig5901.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig5901.1.1 vs. uniprot
Match: D7FRY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRY6_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 3.900e-17
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1 
Query:    1 QNEYLTEPTDEFKAMEKAQGEFRKAQRAYKAEFDKMLDTFLAAKTDDELVKRLSAVTAKQGLVQARGGLPEGVKMKTVFASCRKLKSERK 270
            + EYL EPT EFKAME  Q +F  AQRAYK EF K LD FLA +TD+E V  L+A++     V  RGGLPE V++  +  +CR+ K+  K
Sbjct:   80 EKEYLKEPTAEFKAMEARQADFSAAQRAYKQEFVKKLDAFLAVETDEEAVSTLNAMS---NTVIQRGGLPESVRINDLLKTCRRKKAAMK 166
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BLAST of mRNA_P-wetherbeei_contig5901.1.1 vs. uniprot
Match: A0A7S2XMR1_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XMR1_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 2.770e-6
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    4 NEYLTEPTDEFKAMEKAQGEFRKAQRAYKAEFDKMLDTFL----AAKTDDELVKRLSAVTAKQGLVQARGGLPEGVKMKTVFASCRKLKSE 264
            +EYL+EPTDEFK  E+ + EFRKAQ   K    KM  TF      +KT+DE+V  L  +  +   VQ  GG+P G+K   +    R +K++
Sbjct:   76 DEYLSEPTDEFKESERQRTEFRKAQIVIKV---KMTATFAQLTTVSKTEDEIVADLKELRKQ---VQEVGGMPLGIKKDDLVKVVRSVKAK 160
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BLAST of mRNA_P-wetherbeei_contig5901.1.1 vs. uniprot
Match: A0A7S2XNC7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XNC7_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 4.160e-6
Identity = 37/91 (40.66%), Postives = 52/91 (57.14%), Query Frame = 1 
Query:    4 NEYLTEPTDEFKAMEKAQGEFRKAQRAYKAEFDKMLDTFL----AAKTDDELVKRLSAVTAKQGLVQARGGLPEGVKMKTVFASCRKLKSE 264
            +EYL+EPTDEFK  E+ + EFRKAQ   K    KM  TF      +KT+DE+V  L  +  +   VQ  GG+P G+K   +    R +K++
Sbjct:   76 DEYLSEPTDEFKESERQRTEFRKAQIVIKV---KMTATFAQLTTVSKTEDEIVADLKELRKQ---VQEVGGMPLGIKKDDLVKVVRSVKAK 160
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig5901.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FRY6_ECTSI3.900e-1751.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XMR1_9STRA2.770e-640.66Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2XNC7_9STRA4.160e-640.66Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig5901contigP-wetherbeei_contig5901:183..684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FRY6
Model size270
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue6.39e-18
EggNOG OGs2E8FF@1|root,2SEXQ@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003630.1
Cds size270
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.8293884-CDS-P-wetherbeei_contig5901:182..2771683186872.8293884-CDS-P-wetherbeei_contig5901:182..277Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5901 183..277 -
1683186872.8387177-CDS-P-wetherbeei_contig5901:509..6841683186872.8387177-CDS-P-wetherbeei_contig5901:509..684Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig5901 510..684 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig5901.1.1prot_P-wetherbeei_contig5901.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig5901 183..684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig5901.1.1

>prot_P-wetherbeei_contig5901.1.1 ID=prot_P-wetherbeei_contig5901.1.1|Name=mRNA_P-wetherbeei_contig5901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=90bp
QNEYLTEPTDEFKAMEKAQGEFRKAQRAYKAEFDKMLDTFLAAKTDDELV
KRLSAVTAKQGLVQARGGLPEGVKMKTVFASCRKLKSERK
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mRNA from alignment at P-wetherbeei_contig5901:183..684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig5901.1.1 ID=mRNA_P-wetherbeei_contig5901.1.1|Name=mRNA_P-wetherbeei_contig5901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=502bp|location=Sequence derived from alignment at P-wetherbeei_contig5901:183..684- (Phaeothamnion wetherbeei SAG_119_79)
CAGAACGAATACTTGACGGAACCGACCGACGAATTCAAGGCGATGGAGAA
AGCGCAGGGCGAATTCCGCAAGGCCCAGCGAGCGTACAAGGCGGAGTTCG
ACAAGATGCTGGACACGTTTCTCGCCGCCAAAACCGACGACGAGCTTGTT
AAGCGGCTTTCGGCAGTAACGGCGAGTCGTGTTCCGTCCTGTTGTAGGAT
TCAGCCGGCAGAAAAGGAAGGCTCGGAAACTGTGCAGCTTTCTAGTGCCT
TTGAGAAGAGAAGACGACGCACGACGCCTAGACGATTGCGTAAACCCGAG
GGAAAGCCGGTTACGCCACTCCTTAACCCGAGGGTACGCGGTTCTCTGCC
GTGCAGTTGCTCTTGCCATGCCTTATACCTCTCGGCCTTTTTTGCTGTAT
CTGTGAGAGCAGGGGTTGGTGCAGGCGAGGGGCGGCCTCCCGGAAGGCGT
TAAGATGAAAACAGTCTTTGCCTCATGCCGAAAGTTAAAGAGCGAACGCA
AG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig5901:183..684-

>mRNA_P-wetherbeei_contig5901.1.1 ID=mRNA_P-wetherbeei_contig5901.1.1|Name=mRNA_P-wetherbeei_contig5901.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=270bp|location=Sequence derived from alignment at P-wetherbeei_contig5901:183..684- (Phaeothamnion wetherbeei SAG_119_79)
CAGAACGAATACTTGACGGAACCGACCGACGAATTCAAGGCGATGGAGAA
AGCGCAGGGCGAATTCCGCAAGGCCCAGCGAGCGTACAAGGCGGAGTTCG
ACAAGATGCTGGACACGTTTCTCGCCGCCAAAACCGACGACGAGCTTGTT
AAGCGGCTTTCGGCAGTAACGGCGAAGCAGGGGTTGGTGCAGGCGAGGGG
CGGCCTCCCGGAAGGCGTTAAGATGAAAACAGTCTTTGCCTCATGCCGAA
AGTTAAAGAGCGAACGCAAG
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