mRNA_P-wetherbeei_contig59009.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59009.1.1
Unique NamemRNA_P-wetherbeei_contig59009.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59009.1.1 vs. uniprot
Match: UPI001482233C (FRG domain-containing protein n=1 Tax=Pseudomonas sp. Irchel 3A7 TaxID=2008913 RepID=UPI001482233C)

HSP 1 Score: 58.2 bits (139), Expect = 2.120e-7
Identity = 36/94 (38.30%), Postives = 47/94 (50.00%), Query Frame = 1 
Query:    7 TTLLDFTADPHVAVFFACRAQNGVRNLASSEPACVFGLPLSLFADLNGSIVFAPPWLKRLYAQRGVFLDWSPLDPDLDVREACFRVLFPPDPSF 288
            T  +D TADP VA+ FAC + +  R     E + VF   L  F     +IV  PP+  RLY QRG FL  +P D     +    ++ FP DP F
Sbjct:  163 TDFVDITADPAVAIHFACSSTSKKR----PETSAVFMFDLQDFIHDGAAIVMPPPFANRLYLQRGGFLHTNPYD-FKKFQNWLIKIEFPHDPDF 251
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BLAST of mRNA_P-wetherbeei_contig59009.1.1 vs. uniprot
Match: UPI000B09D07D (FRG domain-containing protein n=1 Tax=Cupriavidus basilensis TaxID=68895 RepID=UPI000B09D07D)

HSP 1 Score: 55.5 bits (132), Expect = 1.800e-6
Identity = 44/120 (36.67%), Postives = 60/120 (50.00%), Query Frame = 1 
Query:    7 TTLLDFTADPHVAVFFACRAQNGVRNLASSEPACVFGLPLSLFADLNGSIVFAPPWLKRLYAQRGVFLDWSPLDPDLDVREACFRVLFPPDPSFALSAARVDEGA-LLAGESWLTSAIAW 363
            T+LLDFT DP VAVFFAC  Q G     S     V+   ++   D    I+ APP  KR+  QRGVF+D     P +  +    R++FP +    L+  R  E   LL+   W+  A A+
Sbjct:  163 TSLLDFTPDPEVAVFFAC--QEG-----SMTQGVVYFQNINRLLDQGLRILLAPPLFKRIEIQRGVFVD----TPGVLSKSLFNRIVFPSN--IPLTVFRNGEAVDLLSMPDWIADASAF 269
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59009.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
UPI001482233C2.120e-738.30FRG domain-containing protein n=1 Tax=Pseudomonas ... [more]
UPI000B09D07D1.800e-636.67FRG domain-containing protein n=1 Tax=Cupriavidus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59009contigP-wetherbeei_contig59009:134..502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1032480.MLP_09020
PFAMsFRG
Model size369
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.9e-05
EggNOG OGsarCOG09511@1|root,2Z9DH@2|Bacteria,2H0JE@201174|Actinobacteria
DescriptionFRG domain
Cds size369
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.8048325-CDS-P-wetherbeei_contig59009:133..5021683186872.8048325-CDS-P-wetherbeei_contig59009:133..502Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59009 134..502 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59009.1.1prot_P-wetherbeei_contig59009.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59009 134..502 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59009.1.1

>prot_P-wetherbeei_contig59009.1.1 ID=prot_P-wetherbeei_contig59009.1.1|Name=mRNA_P-wetherbeei_contig59009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=123bp
MPTTLLDFTADPHVAVFFACRAQNGVRNLASSEPACVFGLPLSLFADLNG
SIVFAPPWLKRLYAQRGVFLDWSPLDPDLDVREACFRVLFPPDPSFALSA
ARVDEGALLAGESWLTSAIAWAR
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mRNA from alignment at P-wetherbeei_contig59009:134..502-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59009.1.1 ID=mRNA_P-wetherbeei_contig59009.1.1|Name=mRNA_P-wetherbeei_contig59009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig59009:134..502- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACCACGCTTCTCGACTTCACCGCTGATCCGCACGTGGCGGTATT
TTTTGCGTGCAGGGCTCAAAACGGCGTCCGCAACCTCGCCAGCAGCGAGC
CCGCGTGCGTGTTCGGCCTGCCCTTGAGCCTGTTTGCCGACCTGAACGGC
TCGATCGTGTTCGCGCCGCCATGGCTGAAGCGGCTCTATGCCCAGCGTGG
CGTTTTCCTCGACTGGTCGCCACTGGACCCCGATCTCGACGTGCGGGAAG
CCTGCTTCCGCGTGCTGTTCCCGCCCGACCCGTCGTTCGCGTTGAGCGCG
GCGAGGGTCGACGAGGGCGCGCTGCTCGCCGGCGAGAGCTGGCTGACCTC
GGCGATCGCGTGGGCGAGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59009:134..502-

>mRNA_P-wetherbeei_contig59009.1.1 ID=mRNA_P-wetherbeei_contig59009.1.1|Name=mRNA_P-wetherbeei_contig59009.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=369bp|location=Sequence derived from alignment at P-wetherbeei_contig59009:134..502- (Phaeothamnion wetherbeei SAG_119_79)
ATGCCGACCACGCTTCTCGACTTCACCGCTGATCCGCACGTGGCGGTATT
TTTTGCGTGCAGGGCTCAAAACGGCGTCCGCAACCTCGCCAGCAGCGAGC
CCGCGTGCGTGTTCGGCCTGCCCTTGAGCCTGTTTGCCGACCTGAACGGC
TCGATCGTGTTCGCGCCGCCATGGCTGAAGCGGCTCTATGCCCAGCGTGG
CGTTTTCCTCGACTGGTCGCCACTGGACCCCGATCTCGACGTGCGGGAAG
CCTGCTTCCGCGTGCTGTTCCCGCCCGACCCGTCGTTCGCGTTGAGCGCG
GCGAGGGTCGACGAGGGCGCGCTGCTCGCCGGCGAGAGCTGGCTGACCTC
GGCGATCGCGTGGGCGAGG
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