mRNA_P-wetherbeei_contig59001.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59001.2.1
Unique NamemRNA_P-wetherbeei_contig59001.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: A0A401TG85_CHIPU (Uncharacterized protein n=1 Tax=Chiloscyllium punctatum TaxID=137246 RepID=A0A401TG85_CHIPU)

HSP 1 Score: 234 bits (598), Expect = 3.850e-78
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ 357
            LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ
Sbjct:    2 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ 120
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: A0A2A2VAD9_9BRAD (Uncharacterized protein n=43 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A2A2VAD9_9BRAD)

HSP 1 Score: 207 bits (528), Expect = 4.160e-62
Identity = 107/120 (89.17%), Postives = 110/120 (91.67%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQP-KDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ 357
            LSIGLPRYSFPTLRVNLPQTG EP+HV  PAP  SVRPA+GYKEGYAAAQP KDVGFADRF+GSTT ASVPGSSEWMQQQKSAADGPNVIYADPS  ANASSYASTKPHWLLSAFPSS Q
Sbjct:  453 LSIGLPRYSFPTLRVNLPQTGSEPLHVTAPAPVASVRPAKGYKEGYAAAQPAKDVGFADRFSGSTTTASVPGSSEWMQQQKSAADGPNVIYADPSVTANASSYASTKPHWLLSAFPSSAQ 572
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI00184D5A61 (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI00184D5A61)

HSP 1 Score: 187 bits (475), Expect = 3.450e-59
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPS 282
            LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPS
Sbjct:   41 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPS 134
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: A0A508TD52_9BRAD (Outer membrane efflux protein BepC n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A508TD52_9BRAD)

HSP 1 Score: 176 bits (445), Expect = 5.970e-50
Identity = 94/117 (80.34%), Postives = 97/117 (82.91%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYK--EGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFP 345
            L IGLPRYSFPTLRVNLPQTG EPV VAVPAPA    P  G +   GYAAAQ  DVGFADR+TGST  ASVPGSSEWMQQQKSA+DGP VIYADPS  ANASSYASTKPHWLLSAFP
Sbjct:  453 LDIGLPRYSFPTLRVNLPQTGSEPVKVAVPAPAAVQGPVAGGRAARGYAAAQANDVGFADRWTGSTATASVPGSSEWMQQQKSASDGPTVIYADPSVTANASSYASTKPHWLLSAFP 569
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: A0A109JVT7_9BRAD (Uncharacterized protein n=2 Tax=Bradyrhizobium macuxiense TaxID=1755647 RepID=A0A109JVT7_9BRAD)

HSP 1 Score: 146 bits (369), Expect = 3.520e-39
Identity = 77/116 (66.38%), Postives = 89/116 (76.72%), Query Frame = 1 
Query:   10 GLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ 357
            GLPRY+ PTLRV+LPQTG EP+HVA PAP  S R A GY    AAAQP D GFADR+ GSTT A+VPG+SEW+ QQKSAA+GP VIYA+PS    A+SYAST+P W+ S FP S Q
Sbjct:  425 GLPRYTLPTLRVDLPQTGSEPLHVATPAPVASARRAAGY----AAAQPNDAGFADRWAGSTTNAAVPGASEWVMQQKSAANGPTVIYAEPSSG-GANSYASTRPQWMTSVFPISTQ 535
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI001BAA7D86 (TolC family outer membrane protein n=2 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BAA7D86)

HSP 1 Score: 143 bits (360), Expect = 9.420e-38
Identity = 79/119 (66.39%), Postives = 91/119 (76.47%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYASTKPHWLLSAFPSSVQ 357
            L+IGLP+YSFPTLRVNLPQTG EP+ VAVPAP  + R A      YAAA+PK  GFADR+ GST  A+VPG+SEW+ QQK+  +GP VIYAD    A A+SYASTKPHWLLSAFP S Q
Sbjct:  454 LNIGLPKYSFPTLRVNLPQTGSEPLRVAVPAPVAASRRATA---AYAAAEPKGAGFADRWQGSTATAAVPGASEWVMQQKTD-EGPRVIYADQ---AGANSYASTKPHWLLSAFPPSAQ 565
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI001BA95AC1 (TolC family outer membrane protein n=1 Tax=Bradyrhizobium sp. AUGA SZCCT0283 TaxID=2807671 RepID=UPI001BA95AC1)

HSP 1 Score: 98.2 bits (243), Expect = 1.820e-21
Identity = 62/119 (52.10%), Postives = 75/119 (63.03%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPK-DVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYAST---KPHWLLSAFP 345
            LS GLP Y  PTLRVNLPQTG EP+ V VPAP    R AR      AA +P+ + GF DR+   +  ++VPG+SEW+ QQK     P VIY   S    A+SYA+T   +PHWLLSAFP
Sbjct:  453 LSFGLPAYGLPTLRVNLPQTGSEPLRVPVPAPVAG-RAARPVSA-LAALEPRPEEGFQDRWPKPSVASNVPGASEWLAQQKGDTAEPKVIYGS-SATTEANSYAATAPRQPHWLLSAFP 568
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI00110E57CA (TolC family outer membrane protein n=1 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI00110E57CA)

HSP 1 Score: 89.4 bits (220), Expect = 2.410e-18
Identity = 63/125 (50.40%), Postives = 73/125 (58.40%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHV--AVPAPAGSVRPARGYKEGYAAAQPKDV-----GFADRFTGSTTIASVPGSSEWMQQQKSA-ADGPNVIYADPSDAANASSYAST---KPHWLLSAF 342
            LS GLP YS PT+R+N PQTG EP+ V  AV     S   A     G A  Q K V     GFADR+  ST   + PG+S W+ QQK    D P VIY  P+D A ASS+A+T   KPHWLLSAF
Sbjct:  453 LSFGLPAYSLPTVRINAPQTGSEPLRVSNAVAGTGPSAAYASVQSLGSATPQ-KSVAQATDGFADRWPSSTVAGNAPGASAWIAQQKGRNVDTPTVIYG-PADGAEASSFAATDQKKPHWLLSAF 575
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI00055E1023 (TolC family outer membrane protein n=1 Tax=Bradyrhizobium sp. URHD0069 TaxID=1380355 RepID=UPI00055E1023)

HSP 1 Score: 86.7 bits (213), Expect = 2.110e-17
Identity = 54/118 (45.76%), Postives = 73/118 (61.86%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQPKDV-GFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANASSYAST---KPHWLLSAF 342
            L  G+  Y  PTLR+NLP+TG EP+ V   AP    RPA      YAA +P+D  GF +R+  S+  A +PG++EW  Q+K +AD P V+Y D     +AS YA+T   KP+WLL+AF
Sbjct:  449 LPYGVVPYKLPTLRINLPETGSEPLRVTGVAPNALARPAA-----YAAVEPRDRDGFKNRWPQSSLAARMPGAAEWFAQKKDSADEPVVLYGDGPGQQSAS-YAATESGKPYWLLNAF 560
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BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Match: UPI0019825CBA (TolC family protein n=1 Tax=Pandoraea nosoerga TaxID=2508296 RepID=UPI0019825CBA)

HSP 1 Score: 73.6 bits (179), Expect = 2.160e-14
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 1 
Query:    1 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGS 105
            LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGS
Sbjct:   90 LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGS 124
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59001.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A401TG85_CHIPU3.850e-78100.00Uncharacterized protein n=1 Tax=Chiloscyllium punc... [more]
A0A2A2VAD9_9BRAD4.160e-6289.17Uncharacterized protein n=43 Tax=Bradyrhizobiaceae... [more]
UPI00184D5A613.450e-59100.00hypothetical protein n=1 Tax=Klebsiella pneumoniae... [more]
A0A508TD52_9BRAD5.970e-5080.34Outer membrane efflux protein BepC n=4 Tax=Bradyrh... [more]
A0A109JVT7_9BRAD3.520e-3966.38Uncharacterized protein n=2 Tax=Bradyrhizobium mac... [more]
UPI001BAA7D869.420e-3866.39TolC family outer membrane protein n=2 Tax=Bradyrh... [more]
UPI001BA95AC11.820e-2152.10TolC family outer membrane protein n=1 Tax=Bradyrh... [more]
UPI00110E57CA2.410e-1850.40TolC family outer membrane protein n=1 Tax=unclass... [more]
UPI00055E10232.110e-1745.76TolC family outer membrane protein n=1 Tax=Bradyrh... [more]
UPI0019825CBA2.160e-14100.00TolC family protein n=1 Tax=Pandoraea nosoerga Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59001contigP-wetherbeei_contig59001:141..500 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1230476.C207_02161
PFAMsOEP
Model size360
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K12543
KEGG TC1.B.17,3.A.1.109.4
KEGG ModuleM00330
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.97e-73
EggNOG OGsCOG1538@1|root,COG1538@2|Bacteria,1MYX2@1224|Proteobacteria,2U11S@28211|Alphaproteobacteria,3JRGM@41294|Bradyrhizobiaceae
DescriptionOuter membrane efflux protein
Cds size360
COG categoryMU
BRITEko00000,ko00002,ko02000,ko02044
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.7399895-CDS-P-wetherbeei_contig59001:140..5001683186872.7399895-CDS-P-wetherbeei_contig59001:140..500Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59001 141..500 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59001.2.1prot_P-wetherbeei_contig59001.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59001 141..500 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59001.2.1

>prot_P-wetherbeei_contig59001.2.1 ID=prot_P-wetherbeei_contig59001.2.1|Name=mRNA_P-wetherbeei_contig59001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=120bp
LSIGLPRYSFPTLRVNLPQTGPEPVHVAVPAPAGSVRPARGYKEGYAAAQ
PKDVGFADRFTGSTTIASVPGSSEWMQQQKSAADGPNVIYADPSDAANAS
SYASTKPHWLLSAFPSSVQ*
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mRNA from alignment at P-wetherbeei_contig59001:141..500-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59001.2.1 ID=mRNA_P-wetherbeei_contig59001.2.1|Name=mRNA_P-wetherbeei_contig59001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig59001:141..500- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGATCGGCCTGCCGCGCTACTCGTTCCCGACCCTTCGCGTGAACCT
GCCGCAAACCGGCCCTGAGCCGGTGCATGTCGCCGTTCCGGCGCCGGCCG
GCTCGGTTCGCCCTGCCAGGGGCTACAAGGAGGGCTATGCGGCGGCCCAG
CCGAAGGATGTCGGTTTCGCTGACCGGTTCACCGGCTCGACCACGATCGC
TTCCGTGCCCGGCTCCTCGGAATGGATGCAGCAGCAAAAGAGCGCTGCGG
ACGGCCCGAATGTCATTTACGCGGACCCGTCGGACGCGGCGAATGCGAGT
TCCTATGCGTCGACGAAGCCCCACTGGCTGCTGTCGGCCTTCCCGAGTTC
GGTGCAATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59001:141..500-

>mRNA_P-wetherbeei_contig59001.2.1 ID=mRNA_P-wetherbeei_contig59001.2.1|Name=mRNA_P-wetherbeei_contig59001.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=360bp|location=Sequence derived from alignment at P-wetherbeei_contig59001:141..500- (Phaeothamnion wetherbeei SAG_119_79)
CTGTCGATCGGCCTGCCGCGCTACTCGTTCCCGACCCTTCGCGTGAACCT
GCCGCAAACCGGCCCTGAGCCGGTGCATGTCGCCGTTCCGGCGCCGGCCG
GCTCGGTTCGCCCTGCCAGGGGCTACAAGGAGGGCTATGCGGCGGCCCAG
CCGAAGGATGTCGGTTTCGCTGACCGGTTCACCGGCTCGACCACGATCGC
TTCCGTGCCCGGCTCCTCGGAATGGATGCAGCAGCAAAAGAGCGCTGCGG
ACGGCCCGAATGTCATTTACGCGGACCCGTCGGACGCGGCGAATGCGAGT
TCCTATGCGTCGACGAAGCCCCACTGGCTGCTGTCGGCCTTCCCGAGTTC
GGTGCAATAG
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