mRNA_P-wetherbeei_contig59000.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig59000.1.1
Unique NamemRNA_P-wetherbeei_contig59000.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig59000.1.1 vs. uniprot
Match: UPI00162A04AA (hypothetical protein n=1 Tax=unclassified Synechococcus TaxID=2626047 RepID=UPI00162A04AA)

HSP 1 Score: 61.6 bits (148), Expect = 6.170e-9
Identity = 38/118 (32.20%), Postives = 55/118 (46.61%), Query Frame = 1 
Query:   88 DVRWNVSSTVFGDFTCRGQRDMALYGTSERSGFVVMIQPSRRGAQPSCLVFATRGREQKSIRLATESLDFKDDVAFRNEVKAAAPD-LQPSKTCQGLALGDGETDSHHIYWNRAKKAF 438
            ++RW+VSS V+GDF+CRG    AL G +     V + +   R   P  L F+   R   S +L  + +  K             PD L+P   C  + + D E D+ +IYWN   K F
Sbjct:   62 NIRWHVSSVVWGDFSCRGLPQAALAGETAGVMHVAIFRTGPR-LPPDVLEFSVPLRSPTSSQL--QVIPLKRLARMARLAAGGFPDGLRPQAPCDAIRIDDSEVDAAYIYWNYNSKRF 176
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig59000.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00162A04AA6.170e-932.20hypothetical protein n=1 Tax=unclassified Synechoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig59000contigP-wetherbeei_contig59000:61..501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size441
Hectar predicted targeting categorysignal peptide
Exons1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186872.6961632-CDS-P-wetherbeei_contig59000:60..5011683186872.6961632-CDS-P-wetherbeei_contig59000:60..501Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig59000 61..501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig59000.1.1prot_P-wetherbeei_contig59000.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig59000 61..501 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig59000.1.1

>prot_P-wetherbeei_contig59000.1.1 ID=prot_P-wetherbeei_contig59000.1.1|Name=mRNA_P-wetherbeei_contig59000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=147bp
MHRLSTAVLLFLLITVAYAAPQSLPEEIADVRWNVSSTVFGDFTCRGQRD
MALYGTSERSGFVVMIQPSRRGAQPSCLVFATRGREQKSIRLATESLDFK
DDVAFRNEVKAAAPDLQPSKTCQGLALGDGETDSHHIYWNRAKKAFQ
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mRNA from alignment at P-wetherbeei_contig59000:61..501+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig59000.1.1 ID=mRNA_P-wetherbeei_contig59000.1.1|Name=mRNA_P-wetherbeei_contig59000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig59000:61..501+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCGTTTGTCTACTGCCGTACTCTTGTTCTTGTTGATCACTGTCGC
GTACGCAGCGCCGCAGTCATTGCCGGAAGAAATTGCCGACGTGCGCTGGA
ACGTCAGTTCCACGGTCTTCGGAGACTTCACATGTCGCGGCCAACGAGAC
ATGGCGCTCTATGGCACATCGGAAAGGTCAGGTTTCGTTGTCATGATTCA
GCCGTCGCGCCGAGGAGCCCAGCCAAGTTGCTTGGTCTTCGCTACTCGCG
GCCGAGAGCAAAAGAGTATTCGTCTTGCCACCGAAAGCCTCGACTTTAAG
GACGACGTTGCCTTCAGAAACGAAGTCAAAGCCGCAGCGCCAGACTTACA
ACCATCGAAAACCTGCCAGGGCTTGGCACTCGGAGACGGTGAAACAGACT
CGCATCACATCTACTGGAATCGCGCCAAGAAGGCGTTTCAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig59000:61..501+

>mRNA_P-wetherbeei_contig59000.1.1 ID=mRNA_P-wetherbeei_contig59000.1.1|Name=mRNA_P-wetherbeei_contig59000.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=441bp|location=Sequence derived from alignment at P-wetherbeei_contig59000:61..501+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCACCGTTTGTCTACTGCCGTACTCTTGTTCTTGTTGATCACTGTCGC
GTACGCAGCGCCGCAGTCATTGCCGGAAGAAATTGCCGACGTGCGCTGGA
ACGTCAGTTCCACGGTCTTCGGAGACTTCACATGTCGCGGCCAACGAGAC
ATGGCGCTCTATGGCACATCGGAAAGGTCAGGTTTCGTTGTCATGATTCA
GCCGTCGCGCCGAGGAGCCCAGCCAAGTTGCTTGGTCTTCGCTACTCGCG
GCCGAGAGCAAAAGAGTATTCGTCTTGCCACCGAAAGCCTCGACTTTAAG
GACGACGTTGCCTTCAGAAACGAAGTCAAAGCCGCAGCGCCAGACTTACA
ACCATCGAAAACCTGCCAGGGCTTGGCACTCGGAGACGGTGAAACAGACT
CGCATCACATCTACTGGAATCGCGCCAAGAAGGCGTTTCAA
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